Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain CHD5 26038 genome.wustl.edu 37 1 6194862 6194862 + Silent SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_015557.1 -1 provisional p.G976 0.547 260 0% 175 10.3% 0 - - - - HMMPfam_SNF2_N PTCHD2 57540 genome.wustl.edu 37 1 11580754 11580754 + Silent SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_020780.1 +1 validated p.V737 0.993 43 0% 41 46.3% 1 100% - - - HMMPfam_Patched HIVEP3 59269 genome.wustl.edu 37 1 42048023 42048023 + Missense_Mutation SNP T T G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_024503.3 -1 validated p.S816R 0.046 51 0% 69 18.8% 1 0% possibly_damaging(0.612) tolerated(0.12) deleterious(0.473) NULL GLMN 11146 genome.wustl.edu 37 1 92754482 92754482 + Silent SNP T T C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_053274.2 -1 reviewed p.E207 0.998 272 0% 274 32.1% 5 60% - - - HMMPfam_FKBP12 ADAM15 8751 genome.wustl.edu 37 1 155034447 155034447 + Missense_Mutation SNP C C G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_207197.1 +1 reviewed p.P807R 0.974 40 0% 54 11.1% 231 16.4% possibly_damaging(0.937) deleterious(0.02) deleterious(0.766) NULL CD1E 913 genome.wustl.edu 37 1 158324229 158324230 + Frame_Shift_Ins INS - - A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_030893.2 +1 reviewed p.T42fs 0.226:0.234 - - - - - - - - - superfamily_MHC antigen-recognition domain IPO9 55705 genome.wustl.edu 37 1 201843466 201843466 + Silent SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_018085.4 +1 validated p.A933 0.546 134 0% 157 38.9% 74 47.2% - - - superfamily_ARM repeat PPFIA4 8497 genome.wustl.edu 37 1 203023240 203023241 + Frame_Shift_Ins INS - - GC rs10635298 byCluster;by1000genomes TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd ENST00000447715 +1 known p.P584fs 0.005:0.000 - - - - - - - - - NULL POLR1B 84172 genome.wustl.edu 37 2 113309368 113309368 + Missense_Mutation SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_019014.4 +1 validated p.S260Y 1.000 146 0% 151 45% 6 66.6% possibly_damaging(0.808) deleterious(0) deleterious(0.748) HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase GLB1L 79411 genome.wustl.edu 37 2 220107953 220107953 + Missense_Mutation SNP G G C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_024506.3 -1 provisional p.S52R 1.000 70 0% 70 42.9% 3 33.3% unknown(0) - - HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases DOCK10 55619 genome.wustl.edu 37 2 225740826 225740826 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_014689.2 -1 validated p.R287H 1.000 199 0% 184 43.5% 0 - possibly_damaging(0.579) tolerated(0.05) deleterious(0.544) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like LRRFIP1 9208 genome.wustl.edu 37 2 238672541 238672541 + Frame_Shift_Del DEL C C - novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001137552.1 +1 validated p.E730fs 0.000 - - - - - - - - - NULL TADA3 10474 genome.wustl.edu 37 3 9831273 9831273 + Missense_Mutation SNP A A T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_006354.2 -1 reviewed p.C162S 1.000 79 0% 62 46.8% 74 50% possibly_damaging(0.819) deleterious(0.01) deleterious(0.715) NULL TRAK1 22906 genome.wustl.edu 37 3 42264472 42264472 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001042646.1 +1 validated p.S702N 0.998 98 1% 123 43.1% 33 69.6% benign(0.005) tolerated(0.13) neutral(0.253) NULL SLITRK3 22865 genome.wustl.edu 37 3 164907829 164907829 + Missense_Mutation SNP G G T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_014926.2 -1 validated p.P264T 1.000 109 0% 112 41.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_LRRCT,superfamily_SSF52058 PIK3CA 5290 genome.wustl.edu 37 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_006218.2 +1 reviewed p.E542K 1.000 215 0.5% 133 71.4% 2 100% probably_damaging(0.989) deleterious(0.03) deleterious(0.804) HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold NAA15 80155 genome.wustl.edu 37 4 140300008 140300008 + Frame_Shift_Del DEL G G - novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_057175.3 +1 validated p.A719fs 1.000 - - - - - - - - - NULL CTXN3 613212 genome.wustl.edu 37 5 126993261 126993261 + Missense_Mutation SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001048252.2 +1 validated p.N16K 0.001 125 0% 140 47.9% 0 - possibly_damaging(0.661) tolerated(0.11) deleterious(0.505) NULL PCDHGA4 56111 genome.wustl.edu 37 5 140735922 140735922 + Silent SNP T T C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_018917.2 +1 reviewed p.S385 0.374 74 0% 72 27.8% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like C5orf45 51149 genome.wustl.edu 37 5 179280247 179280247 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd ENST00000403396 -1 known p.E68K 0.000 23 0% 25 24% 0 - unknown(0) - - NULL RIMS1 22999 genome.wustl.edu 37 6 73108753 73108753 + Missense_Mutation SNP A A T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_014989.4 +1 reviewed p.Q1606L 1.000 363 0% 325 46.8% 0 - probably_damaging(0.972) deleterious(0) deleterious(0.859) HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB) EPB41L2 2037 genome.wustl.edu 37 6 131191021 131191021 + Silent SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001431.3 -1 validated p.T763 0.000 148 0% 187 38.5% 128 38.2% - - - NULL TAAR6 319100 genome.wustl.edu 37 6 132891535 132891535 + Missense_Mutation SNP C C G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_175067.1 +1 reviewed p.I25M 0.000 372 0% 412 41.3% 0 - benign(0) deleterious(0.03) neutral(0.364) superfamily_SSF81321 PDCD2 5134 genome.wustl.edu 37 6 170892198 170892198 + Missense_Mutation SNP A A C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_002598.2 -1 reviewed p.I202S 0.000 433 0% 463 44.3% 99 46.4% benign(0) tolerated(0.74) neutral(0.002) HMMPfam_PDCD2_C PDGFA 5154 genome.wustl.edu 37 7 540834 540834 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_002607.5 -1 reviewed p.V167I 1.000 287 0% 276 34.4% 20 60% possibly_damaging(0.896) tolerated(0.1) deleterious(0.640) HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines PRKAR1B 5575 genome.wustl.edu 37 7 624198 624198 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_002735.2 -1 validated p.T239M 0.999 101 0% 89 38.2% 83 48.1% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding HEATR2 54919 genome.wustl.edu 37 7 801433 801433 + Missense_Mutation SNP T T C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_017802.3 +1 validated p.V505A 0.349 66 0% 96 38.5% 36 52.7% benign(0.071) deleterious(0.02) neutral(0.388) superfamily_ARM repeat BRAT1 221927 genome.wustl.edu 37 7 2586990 2586990 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_152743.2 -1 provisional p.A84T 0.897 50 0% 53 37.7% 61 45.9% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_ARM repeat CCDC129 223075 genome.wustl.edu 37 7 31592725 31592725 + Missense_Mutation SNP C C G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_194300.2 +1 validated p.S29R 0.000 152 0% 151 11.3% 3 0% benign(0) tolerated(1) - NULL AKAP9 10142 genome.wustl.edu 37 7 91652174 91652174 + Missense_Mutation SNP A A C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_005751.4 +1 reviewed p.K1333N 0.014 82 0% 105 40% 2 0% benign(0.002) deleterious(0.04) neutral(0.349) NULL PRRT4 401399 genome.wustl.edu 37 7 127999459 127999459 + Missense_Mutation SNP G G A rs145413607 by1000genomes TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001114726.2 -1 validated p.T196M 0.351 19 0% 25 36% 1 100% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL NOL8 55035 genome.wustl.edu 37 9 95063978 95063978 + Silent SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_017948.5 -1 validated p.K1010 0.001 217 0% 143 79.7% 9 77.7% - - - NULL NOTCH1 4851 genome.wustl.edu 37 9 139402446 139402446 + Silent SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_017617.3 -1 reviewed p.G1157 0.118 21 0% 22 86.4% 9 66.6% - - - HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196 DDX50 79009 genome.wustl.edu 37 10 70661146 70661146 + Silent SNP T T G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_024045.1 +1 reviewed p.P2 0.999 39 0% 49 46.9% 14 50% - - - NULL LIPN 643418 genome.wustl.edu 37 10 90537860 90537860 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001102469.1 +1 validated p.A353V 0.992 291 0% 35 14.3% 0 - benign(0.001) tolerated(0.22) neutral(0.042) HMMPfam_Abhydrolase_1,superfamily_SSF53474 PLCE1 51196 genome.wustl.edu 37 10 96043587 96043587 + Silent SNP T T C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_016341.3 +1 reviewed p.N1612 0.204 249 0% 139 69.1% 1 100% - - - superfamily_PLC-like phosphodiesterases JAKMIP3 282973 genome.wustl.edu 37 10 133967268 133967268 + Silent SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001105521.2 +1 provisional p.L691 0.736 73 0% 41 85.4% 0 - - - - NULL ENSG00000221553 0 genome.wustl.edu 37 11 67700745 67700745 + RNA SNP A A G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd ENST00000408626 +1 novel NULL 0.217 76 0% 79 35.4% 0 - - - - - ARHGAP20 57569 genome.wustl.edu 37 11 110477468 110477468 + Nonsense_Mutation SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_020809.2 -1 validated p.E261* 1.000 118 0% 164 43.9% 0 - - - - HMMPfam_RA MANSC1 54682 genome.wustl.edu 37 12 12483036 12483036 + Silent SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_018050.2 -1 validated p.I407 0.019 137 0% 172 39.5% 103 20.3% - - - NULL SLCO1C1 53919 genome.wustl.edu 37 12 20893265 20893265 + Missense_Mutation SNP T T A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_017435.4 +1 reviewed p.S566T 1.000 350 0% 441 32.9% 0 - probably_damaging(0.989) deleterious(0.01) deleterious(0.845) HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter TUBA1A 7846 genome.wustl.edu 37 12 49579493 49579493 + Missense_Mutation SNP A A C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_006009.2 -1 reviewed p.I219S 1.000 255 0% 292 45.2% 127 29.9% possibly_damaging(0.564) deleterious(0) deleterious(0.637) HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like OR6C65 403282 genome.wustl.edu 37 12 55794637 55794637 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001005518.1 +1 provisional p.E109K 0.811 130 0% 121 38% 0 - possibly_damaging(0.925) deleterious(0.01) deleterious(0.779) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 MTUS2 23281 genome.wustl.edu 37 13 30071441 30071441 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001033602.2 +1 validated p.A1226T 1.000 76 0% 75 26.7% 0 - probably_damaging(1) tolerated(0.17) deleterious(0.559) NULL FOXO1 2308 genome.wustl.edu 37 13 41133979 41133979 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_002015.3 -1 reviewed p.S550L 0.815 157 0% 140 35% 16 25% benign(0.075) tolerated(0.11) neutral(0.277) NULL SPTBN5 51332 genome.wustl.edu 37 15 42149884 42149884 + Missense_Mutation SNP C C G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_016642.2 -1 validated p.G2716R 0.039 31 0% 20 85% 1 100% possibly_damaging(0.88) tolerated(0.16) neutral(0.403) HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat CACNG3 10368 genome.wustl.edu 37 16 24373179 24373179 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_006539.2 +1 reviewed p.V315I 1.000 27 0% 29 44.8% 0 - possibly_damaging(0.791) deleterious(0.01) deleterious(0.702) NULL USP6 9098 genome.wustl.edu 37 17 5038539 5038539 + Silent SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_004505.2 +1 validated p.L169 0.998 298 0% 328 85.4% 0 - - - - HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p TP53 7157 genome.wustl.edu 37 17 7578429 7578429 + Frame_Shift_Del DEL C C - novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_000546.4 -1 reviewed p.Q167fs 0.986 - - - - - - - - - superfamily_p53-like transcription factors,HMMPfam_P53 DNAH2 146754 genome.wustl.edu 37 17 7678610 7678610 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_020877.2 +1 validated p.G1591S 1.000 241 0% 190 84.7% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_DHC_N2 LGALS9B 284194 genome.wustl.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - - TC novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_001042685.1 -1 validated p.M1fs 0.878:0.831 - - - - - - - - - NULL C17orf28 283987 genome.wustl.edu 37 17 72951984 72951984 + Missense_Mutation SNP G G C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_030630.2 -1 validated p.F513L 1.000 247 0% 291 89.7% 128 99.2% possibly_damaging(0.903) deleterious(0) deleterious(0.802) HMMPfam_Hid1 FHOD3 80206 genome.wustl.edu 37 18 34205670 34205670 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_025135.2 +1 validated p.A385V 0.605 58 0% 48 14.6% 0 - benign(0) tolerated(0.23) neutral(0.042) NULL SERPINB3 6317 genome.wustl.edu 37 18 61323250 61323250 + Silent SNP A A G novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_006919.2 -1 validated p.L272 0.000 253 0% 132 68.9% 2 0% - - - HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins FFAR3 2865 genome.wustl.edu 37 19 35850313 35850313 + Missense_Mutation SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_005304.3 +1 validated p.R174Q 0.014 102 0% 134 20.1% 0 - benign(0.058) tolerated(0.59) neutral(0.008) HMMPfam_7tm_1,superfamily_SSF81321 ZNF574 64763 genome.wustl.edu 37 19 42585390 42585390 + Missense_Mutation SNP G G T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_022752.5 +1 validated p.V878L 1.000 30 0% 27 37% 68 48.5% benign(0.014) tolerated(0.3) neutral(0.029) NULL CCDC114 93233 genome.wustl.edu 37 19 48814869 48814869 + Silent SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_144577.3 -1 validated p.L143 1.000 108 0% 154 46.1% 0 - - - - NULL JAG1 182 genome.wustl.edu 37 20 10639252 10639252 + Silent SNP G G A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_000214.2 -1 reviewed p.T186 1.000 230 0% 247 37.7% 4 25% - - - HMMPfam_DSL,HMMSmart_DSL FOXA2 3170 genome.wustl.edu 37 20 22563132 22563132 + Nonsense_Mutation SNP C C A novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_021784.4 -1 reviewed p.E250* 1.000 26 0% 25 76% 54 87% - - - HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785 CYP2D6 1565 genome.wustl.edu 37 22 42523581 42523581 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_000106.4 -1 reviewed p.M347I 0.936 64 0% 63 79.4% 2 100% benign(0.072) tolerated(0.14) neutral(0.255) HMMPfam_p450,superfamily_Cytochrome_P450 MAGEB6 158809 genome.wustl.edu 37 X 26213018 26213018 + Missense_Mutation SNP C C T novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_173523.2 +1 reviewed p.P352L 0.025 341 0% 317 30% 0 - probably_damaging(0.983) deleterious(0) deleterious(0.873) HMMPfam_MAGE WNK3 65267 genome.wustl.edu 37 X 54319596 54319596 + Missense_Mutation SNP G G C novel TCGA-D1-A17K-01A-11D-A12J-09 TCGA-D1-A17K-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50723947-4ab0-4e78-8b30-204b60c24bfb 2b39f34d-3657-46be-bb34-89ee658b77bd NM_020922.4 -1 reviewed p.L620V 0.538 264 0% 248 10.9% 0 - benign(0.027) tolerated(0.42) neutral(0.015) superfamily_Kinase_like