Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain TP73 7161 genome.wustl.edu 37 1 3646582 3646582 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005427.2 +1 reviewed p.P405 0.002 27 0% 30 40% 19 47.3% - - - NULL CEP104 9731 genome.wustl.edu 37 1 3754043 3754043 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014704.3 -1 validated p.R311H 0.000 240 0% 221 45.7% 15 66.6% benign(0.001) tolerated(0.59) neutral(0.004) NULL CAMTA1 23261 genome.wustl.edu 37 1 7724128 7724128 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015215.1 +1 validated p.M507I 0.981 40 0% 37 45.9% 0 - benign(0.006) tolerated(0.08) neutral(0.300) NULL H6PD 9563 genome.wustl.edu 37 1 9323719 9323719 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004285.3 +1 reviewed p.A389 0.000 51 0% 55 45.5% 12 25% - - - superfamily_SSF55347 MFN2 9927 genome.wustl.edu 37 1 12067288 12067288 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001127660.1 +1 reviewed p.C684Y 1.000 55 0% 40 10% 42 2.3% probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Fzo_mitofusin PLA2G2E 30814 genome.wustl.edu 37 1 20249129 20249129 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014589.1 -1 provisional p.P54S 1.000 86 0% 75 41.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2 MUL1 79594 genome.wustl.edu 37 1 20827284 20827284 + Missense_Mutation SNP C C T rs189393223 by1000genomes TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024544.2 -1 validated p.V320I 0.985 97 0% 80 27.5% 34 35.2% benign(0.029) tolerated(0.19) neutral(0.051) HMMSmart_RING,superfamily_SSF57850 RUNX3 864 genome.wustl.edu 37 1 25256138 25256138 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001031680.2 -1 reviewed p.F88 1.000 37 0% 49 22.4% 6 33.3% - - - superfamily_p53-like transcription factors,HMMPfam_Runt CATSPER4 378807 genome.wustl.edu 37 1 26524887 26524887 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198137.1 +1 validated p.W263* 1.000 211 0% 173 45.7% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ZNF683 257101 genome.wustl.edu 37 1 26691429 26691429 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001114759.1 -1 validated p.P203H 0.001 503 0% 470 37% 3 0% unknown(0) deleterious(0) - NULL ARID1A 8289 genome.wustl.edu 37 1 27087503 27087503 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006015.4 +1 reviewed p.R693* 1.000 224 0% 188 30.3% 21 28.5% - - - NULL MAP3K6 9064 genome.wustl.edu 37 1 27685058 27685058 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000472410 -1 known p.R600Q 0.017 56 0% 52 42.3% 24 50% - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase MACF1 23499 genome.wustl.edu 37 1 39818804 39818804 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000372925 +1 known p.G847R 0.002 164 0% 168 35.1% 0 - - - - NULL PTPRF 5792 genome.wustl.edu 37 1 44086177 44086179 + In_Frame_Del DEL TTG TTG - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TTG TTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002840.3 +1 reviewed p.V1766in_frame_del 1.000:0.994:1.000 - - - - - - - - - HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II TESK2 10420 genome.wustl.edu 37 1 45811044 45811044 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_007170.2 -1 reviewed p.R395H 0.001 54 0% 65 49.2% 5 20% benign(0.001) tolerated(0.8) neutral(0.001) NULL TESK2 10420 genome.wustl.edu 37 1 45923415 45923415 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_007170.2 -1 reviewed p.R15C 1.000 313 0% 268 39.9% 3 33.3% possibly_damaging(0.847) tolerated(0.15) deleterious(0.566) NULL PODN 127435 genome.wustl.edu 37 1 53546475 53546475 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_153703.3 +1 validated p.Q578* 1.000 113 0% 70 38.6% 1 0% - - - HMMPfam_LRR_1,superfamily_SSF52047 C8B 732 genome.wustl.edu 37 1 57411609 57411609 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000066.2 -1 reviewed p.Y330 0.441 254 0.4% 199 33.2% 0 - - - - HMMPfam_MACPF,HMMSmart_SM00457 LRRC7 57554 genome.wustl.edu 37 1 70225913 70225913 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020794.2 +1 validated p.G9D 1.000 87 0% 74 33.8% 0 - possibly_damaging(0.944) tolerated(0.06) deleterious(0.711) superfamily_L domain-like PIGK 10026 genome.wustl.edu 37 1 77627342 77627342 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005482.2 -1 reviewed p.E213 0.678 216 0% 146 47.3% 8 62.5% - - - HMMPfam_Peptidase_C13 DR1 1810 genome.wustl.edu 37 1 93826181 93826181 + Missense_Mutation SNP T T A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001938.2 +1 reviewed p.D172E 1.000 213 0% 196 41.8% 16 37.5% unknown(0) tolerated(0.31) - NULL RHOC 389 genome.wustl.edu 37 1 113244200 113244200 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001042678.1 -1 reviewed p.R182S 1.000 142 0% 147 42.9% 446 43% benign(0.001) tolerated(0.1) neutral(0.286) HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases TRIM33 51592 genome.wustl.edu 37 1 114964249 114964249 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015906.3 -1 reviewed p.P624S 1.000 764 0% 675 37% 21 38% probably_damaging(0.999) tolerated(0.28) deleterious(0.522) NULL CSDE1 7812 genome.wustl.edu 37 1 115262208 115262208 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001130523.1 -1 validated p.W751* 1.000 129 0% 128 44.5% 188 5.3% - - - HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins CSDE1 7812 genome.wustl.edu 37 1 115280681 115280681 + Missense_Mutation SNP A A C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001130523.1 -1 validated p.F117C 1.000 431 0% 408 39.5% 51 78.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins TXNIP 10628 genome.wustl.edu 37 1 145440289 145440289 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006472.3 +1 validated p.A199T 1.000 144 0% 232 14.2% 396 17.4% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Arrestin_C,superfamily_Ig_E-set POLR3GL 84265 genome.wustl.edu 37 1 145457040 145457042 + In_Frame_Del DEL TCT TCT - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TCT TCT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032305.1 -1 provisional p.E174in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL S100A7A 338324 genome.wustl.edu 37 1 153391728 153391728 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_176823.3 +1 validated p.A83 0.000 168 0% 188 21.8% 1 0% - - - superfamily_SSF47473 ETV3L 440695 genome.wustl.edu 37 1 157067666 157067666 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001004341.2 -1 validated p.V201I 0.000 110 0% 166 17.5% 0 - benign(0) tolerated(0.09) neutral(0.296) NULL IGSF8 93185 genome.wustl.edu 37 1 160061683 160061683 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_052868.2 -1 provisional p.A591V 0.759 149 0% 244 20.1% 461 24% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL USP21 27005 genome.wustl.edu 37 1 161130777 161130777 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001014443.2 +1 reviewed p.S116N 1.000 123 0% 215 21.4% 56 19.6% possibly_damaging(0.873) deleterious(0) deleterious(0.784) NULL FCGR2C 9103 genome.wustl.edu 37 1 161561069 161561069 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_201563.4 +1 reviewed p.R176H 0.000 564 0.4% 859 17.3% 2 0% benign(0) tolerated(1) - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin PRRX1 5396 genome.wustl.edu 37 1 170695427 170695427 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022716.2 +1 reviewed p.A162T 1.000 121 0% 172 16.9% 70 25.7% probably_damaging(0.99) tolerated(0.06) deleterious(0.764) superfamily_Homeodomain-like KLHL20 27252 genome.wustl.edu 37 1 173703366 173703366 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014458.3 +1 reviewed p.H180Y 1.000 168 0% 258 17.4% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_BACK CACNA1E 777 genome.wustl.edu 37 1 181765921 181765921 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000721.2 +1 reviewed p.A2066V 0.846 109 0% 152 19.7% 0 - possibly_damaging(0.821) tolerated(0.31) neutral(0.338) NULL GLT25D2 23127 genome.wustl.edu 37 1 183913408 183913408 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015101.2 -1 validated p.R440H 1.000 281 0% 452 22.6% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Glyco_transf_25 TRMT1L 81627 genome.wustl.edu 37 1 185089163 185089163 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_030934.4 -1 reviewed p.C730 0.876 172 0% 266 21.1% 18 33.3% - - - NULL CFHR5 81494 genome.wustl.edu 37 1 196952157 196952157 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_030787.3 +1 reviewed p.W67* 0.335 304 0% 445 18.2% 0 - - - - HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module PLEKHA6 22874 genome.wustl.edu 37 1 204217950 204217950 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014935.2 -1 validated p.T608M 1.000 238 0% 358 24.6% 15 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PTPN14 5784 genome.wustl.edu 37 1 214638039 214638039 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005401.4 -1 reviewed p.T36 0.018 197 0% 332 19.3% 8 37.5% - - - HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236 OBSCN 84033 genome.wustl.edu 37 1 228470802 228470802 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001098623.1 +1 reviewed p.R2852W 0.000 37 0% 70 12.9% 2 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin LYST 1130 genome.wustl.edu 37 1 235918789 235918789 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000081.2 -1 reviewed p.G2406 1.000 174 0% 323 15.8% 2 50% - - - NULL MTR 4548 genome.wustl.edu 37 1 237057694 237057694 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000254.2 +1 reviewed p.C1081Y 1.000 289 0% 458 16.2% 31 16.1% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Methionine synthase activation domain-like CHRM3 1131 genome.wustl.edu 37 1 240071263 240071263 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000740.2 +1 reviewed p.T171M 1.000 194 0% 332 21.1% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_SSF81321 ZNF672 79894 genome.wustl.edu 37 1 249142437 249142437 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024836.1 +1 provisional p.D322N 0.112 25 0% 20 30% 101 20.7% probably_damaging(0.987) tolerated(0.21) deleterious(0.480) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PGBD2 267002 genome.wustl.edu 37 1 249211654 249211654 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_170725.2 +1 validated p.R291* 0.000 181 0% 232 25.4% 11 27.2% - - - NULL LOC100288793 100288793 genome.wustl.edu 37 2 1653106 1653106 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab XM_002342190.1 +1 model p.W79* 1.000 105 0% 112 38.4% 6 0% probably_damaging(0.987) deleterious(0) deleterious(0.881) NULL RNF144A 9781 genome.wustl.edu 37 2 7154616 7154618 + In_Frame_Del DEL AAG AAG - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 AAG AAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014746.3 +1 reviewed p.E57in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMSmart_RING SOS1 6654 genome.wustl.edu 37 2 39250044 39250044 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005633.3 -1 reviewed p.E509K 1.000 223 0% 184 42.4% 1 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like MAP4K3 8491 genome.wustl.edu 37 2 39505605 39505605 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000437545 -1 known p.R546* 0.187 146 0% 118 27.1% 5 40% - - - HMMPfam_CNH,HMMSmart_SM00036 TSPYL6 388951 genome.wustl.edu 37 2 54482503 54482503 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001003937.2 -1 validated p.L262 0.217 107 0% 63 46% 0 - - - - HMMPfam_NAP PNPT1 87178 genome.wustl.edu 37 2 55874529 55874529 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_033109.3 -1 validated p.P519T 0.140 173 0% 194 41.8% 13 46.1% benign(0.011) tolerated(0.09) neutral(0.297) HMMPfam_RNase_PH_C,superfamily_3_ExoRNase CCDC85A 114800 genome.wustl.edu 37 2 56420129 56420129 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001080433.1 +1 provisional p.C265Y 0.984 47 0% 53 37.7% 0 - benign(0) deleterious(0.04) neutral(0.349) NULL USP34 9736 genome.wustl.edu 37 2 61441455 61441455 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014709.3 -1 validated p.V2808F 1.000 104 0% 103 35.9% 19 63.1% possibly_damaging(0.687) - - NULL WBP1 23559 genome.wustl.edu 37 2 74687092 74687092 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012477.2 +1 reviewed p.R89W 1.000 264 0.4% 226 45.1% 202 43% probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPAT2 150763 genome.wustl.edu 37 2 96688770 96688770 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000335448 -1 known p.V774I 0.699 100 0% 83 33.7% 23 30.4% benign(0.014) tolerated(0.2) neutral(0.050) NULL TGFBRAP1 9392 genome.wustl.edu 37 2 105896918 105896918 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001142621.1 -1 validated p.D462N 1.000 151 0% 115 33.9% 15 40% benign(0.308) tolerated(0.27) neutral(0.130) HMMPfam_Vps39_1 SULT1C2 6819 genome.wustl.edu 37 2 108921145 108921145 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_176825.2 +1 reviewed p.I175T 1.000 221 0% 176 47.2% 8 12.5% possibly_damaging(0.484) deleterious(0) deleterious(0.605) HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases BCL2L11 10018 genome.wustl.edu 37 2 111881511 111881511 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_138621.3 +1 reviewed p.P63 0.974 116 0% 94 50% 9 44.4% - - - NULL SMPD4 55627 genome.wustl.edu 37 2 130910890 130910890 + Splice_Site SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017951.3 -1 validated e18+2 1.000 101 0% 72 43.1% 2 100% - - - - RIF1 55183 genome.wustl.edu 37 2 152320637 152320637 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018151.4 +1 reviewed p.R1535W 1.000 106 0% 83 36.1% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ARM repeat SCN3A 6328 genome.wustl.edu 37 2 165947767 165947767 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006922.3 -1 reviewed p.L1632 0.048 356 0% 290 37.6% 0 - - - - HMMPfam_Ion_trans,superfamily_SSF81324 G6PC2 57818 genome.wustl.edu 37 2 169758043 169758043 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_021176.2 +1 reviewed p.N68D 1.000 149 0% 140 45.7% 0 - possibly_damaging(0.556) deleterious(0) deleterious(0.634) HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase RBM45 129831 genome.wustl.edu 37 2 178985903 178985903 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000456670 +1 known p.G226R 1.000 97 0% 80 25% 1 0% - - - NULL TTN 7273 genome.wustl.edu 37 2 179587193 179587193 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000356127 -1 known p.R6197* 0.996 83 0% 69 29% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set C2orf62 375307 genome.wustl.edu 37 2 219222777 219222777 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198559.1 +1 predicted p.L113 0.003 108 0% 119 31.1% 14 28.5% - - - NULL PSMD1 5707 genome.wustl.edu 37 2 231941836 231941836 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002807.2 +1 reviewed p.R344Q 1.000 134 0% 105 34.3% 11 45.4% possibly_damaging(0.921) deleterious(0.05) deleterious(0.716) NULL LINC00471 151477 genome.wustl.edu 37 2 232378884 232378885 + RNA DEL AT AT - rs10534780 byCluster;by1000genomes TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NR_024079.1 -1 predicted NULL 0.000:0.000 - - - - - - - - - - DIS3L2 129563 genome.wustl.edu 37 2 233201208 233201208 + Silent SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000418143 +1 known p.G123C 1.000 79 0% 77 36.4% 34 64.7% - - - NULL PASK 23178 genome.wustl.edu 37 2 242080067 242080067 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015148.2 -1 validated p.E100K 0.001 157 0% 104 38.5% 8 75% benign(0) deleterious(0.01) neutral(0.406) NULL LOC401052 401052 genome.wustl.edu 37 3 10049185 10049187 + In_Frame_Del DEL TTC TTC - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TTC TTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001008737.1 -1 predicted p.K67in_frame_del 0.001:0.001:0.001 - - - - - - - - - NULL ATP2B2 491 genome.wustl.edu 37 3 10384561 10384561 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001001331.2 -1 reviewed p.T931M 0.997 123 0% 112 43.8% 1 0% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M GLB1 2720 genome.wustl.edu 37 3 33038787 33038787 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000404.2 -1 reviewed p.R595L 0.014 86 0% 80 31.2% 326 37.4% probably_damaging(0.96) tolerated(0.31) neutral(0.430) NULL ITGA9 3680 genome.wustl.edu 37 3 37555305 37555305 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002207.2 +1 reviewed p.G317S 1.000 277 0% 250 36% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318 TRAIP 10293 genome.wustl.edu 37 3 49885583 49885583 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005879.2 -1 reviewed p.R50Q 1.000 220 0% 203 33.5% 2 0% possibly_damaging(0.666) deleterious(0.01) deleterious(0.641) superfamily_SSF57850 DNAH1 25981 genome.wustl.edu 37 3 52394428 52394428 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015512.4 +1 validated p.P1558H 1.000 192 0% 162 41.4% 6 33.3% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_P-loop containing nucleoside triphosphate hydrolases LRIG1 26018 genome.wustl.edu 37 3 66467647 66467647 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015541.2 -1 validated p.A137T 0.209 217 0% 232 37.9% 109 39.4% benign(0.002) tolerated(0.57) neutral(0.006) superfamily_L domain-like ARL6IP5 10550 genome.wustl.edu 37 3 69153644 69153644 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006407.3 +1 reviewed p.R142W 1.000 100 0% 65 43.1% 171 39.7% unknown(0) - - HMMPfam_PRA1 KIAA1524 57650 genome.wustl.edu 37 3 108285486 108285486 + Splice_Site SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020890.2 -1 validated e11-1 1.000 278 0% 234 36.3% 0 - - - - - CD96 10225 genome.wustl.edu 37 3 111356988 111356988 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198196.2 +1 reviewed p.T500A 0.971 302 0% 274 34.7% 1 0% probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL BOC 91653 genome.wustl.edu 37 3 113003294 113003294 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_033254.2 +1 validated p.L922 0.829 118 0% 112 40.2% 10 60% - - - NULL ADCY5 111 genome.wustl.edu 37 3 123021985 123021985 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_183357.1 -1 validated p.V881M 0.996 83 0% 64 29.7% 11 18.1% benign(0.011) tolerated(0.09) neutral(0.297) NULL KBTBD12 166348 genome.wustl.edu 37 3 127642005 127642005 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_207335.2 +1 validated p.V34A 0.985 203 0% 229 16.6% 0 - probably_damaging(1) deleterious(0.04) deleterious(0.849) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB ATP2C1 27032 genome.wustl.edu 37 3 130717235 130717235 + Splice_Site SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001001486.1 +1 reviewed e25+2 1.000 319 0% 258 38% 3 100% - - - - IGSF10 285313 genome.wustl.edu 37 3 151165062 151165062 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_178822.4 -1 validated p.F903L 0.000 202 0% 202 35.6% 0 - benign(0.141) deleterious(0.03) neutral(0.377) NULL FNDC3B 64778 genome.wustl.edu 37 3 172025166 172025166 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001135095.1 +1 validated p.Y359H 1.000 243 0% 190 46.3% 33 42.4% possibly_damaging(0.686) tolerated(0.54) neutral(0.253) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III VWA5B2 90113 genome.wustl.edu 37 3 183958875 183958875 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_138345.1 +1 provisional p.P981H 0.016 156 0% 109 39.4% 12 66.6% benign(0.163) tolerated(0.13) neutral(0.267) NULL KIAA0226 9711 genome.wustl.edu 37 3 197403805 197403805 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001145642.2 -1 validated p.R821Q 1.000 196 0% 166 44% 10 0% benign(0.057) tolerated(0.32) neutral(0.028) NULL WHSC2 7469 genome.wustl.edu 37 4 1991522 1991522 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005663.3 -1 reviewed p.A164T 0.998 198 0.5% 138 38.4% 46 50% benign(0.108) deleterious(0.02) neutral(0.392) NULL TLR6 10333 genome.wustl.edu 37 4 38828822 38828822 + Missense_Mutation SNP C C T rs55963748 TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006068.3 -1 validated p.R758Q 0.366 312 0% 302 36.8% 2 100% probably_damaging(0.955) deleterious(0.02) deleterious(0.782) HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR NOA1 84273 genome.wustl.edu 37 4 57830572 57830572 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032313.2 -1 provisional p.G629C 1.000 173 0% 149 46.3% 36 0% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UGT2B11 10720 genome.wustl.edu 37 4 69874749 69874749 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000381096 -1 known p.G379D 1.000 280 0% 236 35.6% 0 - - - - HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase USO1 8615 genome.wustl.edu 37 4 76722325 76722325 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000264904 +1 known p.T581I 1.000 205 0% 139 24.5% 30 33.3% benign(0.263) tolerated(0.1) neutral(0.314) superfamily_ARM repeat FGF5 2250 genome.wustl.edu 37 4 81207633 81207633 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004464.3 +1 reviewed p.R205Q 0.928 128 0.8% 100 32% 0 - probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine HSD17B11 51170 genome.wustl.edu 37 4 88295861 88295861 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_016245.3 -1 validated p.A147V 1.000 172 0% 149 30.2% 10 30% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains MAML3 55534 genome.wustl.edu 37 4 140811081 140811081 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018717.4 -1 validated p.Q503 1.000 60 0% 83 34.9% 0 - - - - NULL DDX60L 91351 genome.wustl.edu 37 4 169341410 169341410 + Splice_Site SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001012967.1 -1 validated e17+2 0.949 49 0% 44 40.9% 0 - - - - - FAT1 2195 genome.wustl.edu 37 4 187541661 187541661 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005245.3 -1 reviewed p.R2027C 1.000 296 0% 244 34.8% 11 27.2% probably_damaging(0.988) deleterious(0.04) deleterious(0.786) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like SLC9A3 6550 genome.wustl.edu 37 5 488478 488478 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004174.2 -1 validated p.F210L 1.000 54 0% 39 38.5% 1 0% probably_damaging(0.996) deleterious(0.01) deleterious(0.867) HMMPfam_Na_H_Exchanger SLC6A3 6531 genome.wustl.edu 37 5 1411427 1411427 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001044.4 -1 reviewed p.T400 0.438 85 0% 77 39% 0 - - - - HMMPfam_SNF ADAMTS16 170690 genome.wustl.edu 37 5 5303837 5303838 + Frame_Shift_Ins INS - - A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_139056.2 +1 reviewed p.P1049fs 1.000:1.000 - - - - - - - - - NULL NSUN2 54888 genome.wustl.edu 37 5 6625761 6625761 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017755.4 -1 validated p.W127* 1.000 258 0% 212 12.7% 12 8.3% - - - superfamily_SSF53335 MYO10 4651 genome.wustl.edu 37 5 16762723 16762723 + Silent SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012334.2 -1 validated p.I506 1.000 254 0% 210 31.9% 13 46.1% - - - HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 BASP1 10409 genome.wustl.edu 37 5 17275411 17275411 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006317.3 +1 reviewed p.A29V 0.300 28 3.6% 27 44.4% 110 31.8% unknown(0) tolerated(0.15) - HMMPfam_BASP1 RXFP3 51289 genome.wustl.edu 37 5 33938124 33938124 + Nonsense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_016568.3 +1 validated p.E427* 1.000 35 0% 26 50% 0 - - - - superfamily_SSF81321 PIK3R1 5295 genome.wustl.edu 37 5 67589610 67589612 + In_Frame_Del DEL AAA AAA - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 AAA AAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_181523.1 +1 reviewed p.K459in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL ATG10 83734 genome.wustl.edu 37 5 81460231 81460231 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001131028.1 +1 validated p.L77P 0.000 361 0% 252 39.7% 5 20% benign(0) tolerated(0.13) neutral(0.253) NULL TTC37 9652 genome.wustl.edu 37 5 94803683 94803683 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014639.2 -1 provisional p.R1503C 0.997 200 0% 180 43.3% 44 34% probably_damaging(1) deleterious(0) deleterious(0.945) NULL LNPEP 4012 genome.wustl.edu 37 5 96363454 96363454 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005575.2 +1 reviewed p.Y961C 1.000 321 0% 254 36.2% 5 0% probably_damaging(0.986) tolerated(0.08) deleterious(0.734) NULL GIN1 54826 genome.wustl.edu 37 5 102442584 102442584 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017676.2 -1 validated p.R57G 1.000 93 0% 108 36.1% 0 - possibly_damaging(0.843) tolerated(0.05) deleterious(0.668) NULL FBN2 2201 genome.wustl.edu 37 5 127611738 127611738 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001999.3 -1 reviewed p.T2529I 0.995 413 0% 356 11.2% 7 42.8% benign(0.003) tolerated(0.08) neutral(0.300) HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin PCDHGB7 56099 genome.wustl.edu 37 5 140799123 140799123 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018927.2 +1 reviewed p.A566V 0.489 27 0% 30 40% 1 0% benign(0.03) tolerated(0.25) neutral(0.038) superfamily_Cadherin-like RNF14 9604 genome.wustl.edu 37 5 141359765 141359765 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004290.3 +1 reviewed p.A304 0.996 131 0% 120 44.2% 30 53.3% - - - HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box FBXO38 81545 genome.wustl.edu 37 5 147818023 147818023 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_205836.1 +1 validated p.E996K 1.000 295 0% 283 36.4% 25 32% possibly_damaging(0.891) deleterious(0) deleterious(0.795) NULL SYNPO 11346 genome.wustl.edu 37 5 150029778 150029778 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_007286.5 +1 validated p.P647 0.000 26 0% 25 48% 8 25% - - - NULL DOCK2 1794 genome.wustl.edu 37 5 169461533 169461533 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004946.2 +1 validated p.R1200C 1.000 165 0% 165 33.9% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL HNRNPH1 3187 genome.wustl.edu 37 5 179042546 179042546 + Splice_Site SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005520.2 -1 reviewed e12+1 1.000 125 0% 103 29.1% 1 0% - - - - SLC17A4 10050 genome.wustl.edu 37 6 25770690 25770690 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005495.2 +1 validated p.A204T 0.458 175 0% 137 12.4% 0 - benign(0.024) tolerated(0.29) neutral(0.030) HMMPfam_MFS_1,superfamily_MFS general substrate transporter NFKBIL1 4795 genome.wustl.edu 37 6 31525437 31525437 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005007.3 +1 reviewed p.R123C 0.997 166 0% 172 46.5% 24 54.1% probably_damaging(0.999) deleterious(0.03) deleterious(0.855) HMMPfam_Ank,superfamily_Ankyrin repeat ATF6B 1388 genome.wustl.edu 37 6 32087733 32087733 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004381.4 -1 reviewed p.V278 0.999 112 0% 116 37.9% 155 35.4% - - - NULL NOTCH4 4855 genome.wustl.edu 37 6 32165333 32165333 + Nonsense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004557.3 -1 reviewed p.E1599* 1.000 143 0% 113 32.7% 1 0% - - - HMMPfam_Ank,superfamily_Ankyrin repeat KIFC1 3833 genome.wustl.edu 37 6 33377450 33377450 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002263.3 +1 validated p.Q669* 0.991 181 0% 177 36.7% 59 33.8% - - - HMMSmart_KISc PHF1 5252 genome.wustl.edu 37 6 33381251 33381251 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024165.2 +1 reviewed p.P168 0.973 210 0% 231 43.7% 29 20.6% - - - NULL DST 667 genome.wustl.edu 37 6 56418138 56418138 + Missense_Mutation SNP T T A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015548.4 -1 reviewed p.N2528I 0.980 273 0% 213 28.2% 1 0% possibly_damaging(0.917) - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat DST 667 genome.wustl.edu 37 6 56484743 56484745 + In_Frame_Del DEL TTC TTC - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TTC TTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001723.5 -1 reviewed p.E1363in_frame_del 0.004:0.240:0.054 - - - - - - - - - NULL PHF3 23469 genome.wustl.edu 37 6 64394234 64394234 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015153.2 +1 provisional p.S204N 0.000 124 0% 111 41.4% 5 20% benign(0.086) deleterious(0.04) neutral(0.355) NULL MDN1 23195 genome.wustl.edu 37 6 90368559 90368559 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014611.1 -1 provisional p.D4931N 0.031 954 0% 872 34.4% 8 37.5% unknown(0) tolerated(0.55) - NULL REV3L 5980 genome.wustl.edu 37 6 111650842 111650843 + Frame_Shift_Del DEL CT CT - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002912.3 -1 validated p.R2711fs 1.000:1.000 - - - - - - - - - HMMPfam_DNA_pol_B,HMMSmart_SM00486,superfamily_DNA/RNA polymerases EPB41L2 2037 genome.wustl.edu 37 6 131211472 131211472 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001431.3 -1 validated p.R541H 1.000 349 0.3% 304 38.2% 67 47.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_FA,superfamily_SSF50729 NOX3 50508 genome.wustl.edu 37 6 155750022 155750022 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015718.2 -1 reviewed p.V351M 1.000 100 0% 77 45.5% 0 - possibly_damaging(0.88) deleterious(0) deleterious(0.788) HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl ZDHHC14 79683 genome.wustl.edu 37 6 157963706 157963706 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024630.2 +1 provisional p.T112I 0.998 92 0% 60 40% 0 - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL C6orf120 387263 genome.wustl.edu 37 6 170102682 170102682 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001029863.1 +1 predicted p.H43Y 1.000 27 0% 20 25% 26 7.6% possibly_damaging(0.447) deleterious(0.03) deleterious(0.510) NULL BRAT1 221927 genome.wustl.edu 37 7 2577948 2577948 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152743.2 -1 provisional p.G741C 0.000 25 0% 18 44.4% 75 40% possibly_damaging(0.758) tolerated(0.17) neutral(0.340) NULL TTYH3 80727 genome.wustl.edu 37 7 2697960 2697960 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_025250.2 +1 reviewed p.P431S 0.630 12 0% 18 33.3% 99 33.3% benign(0) tolerated(0.44) neutral(0.013) NULL BZW2 28969 genome.wustl.edu 37 7 16722469 16722469 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014038.2 +1 validated p.K135R 1.000 95 0% 90 40% 39 41% benign(0.396) deleterious(0.02) deleterious(0.510) NULL CDCA7L 55536 genome.wustl.edu 37 7 21946056 21946056 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018719.4 -1 validated p.R258W 0.995 130 0% 104 50% 5 20% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PDE1C 5137 genome.wustl.edu 37 7 31917638 31917638 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005020.1 -1 provisional p.R146Q 1.000 256 0% 210 42.4% 0 - probably_damaging(0.996) deleterious(0.01) deleterious(0.867) NULL KBTBD2 25948 genome.wustl.edu 37 7 32909547 32909547 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015483.2 -1 validated p.H428N 1.000 165 0% 143 46.2% 28 50% benign(0.291) tolerated(0.24) neutral(0.127) HMMSmart_SM00612,superfamily_Galactose oxidase central domain CDK13 8621 genome.wustl.edu 37 7 40127782 40127782 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003718.4 +1 reviewed p.K1029 1.000 203 0% 166 39.8% 14 50% - - - superfamily_Protein kinase-like (PK-like) LOC100289196 100289196 genome.wustl.edu 37 7 56671167 56671167 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab XM_002342722.1 +1 model p.Y22C 0.950 22 0% 16 43.8% 0 - - - - NULL WBSCR17 64409 genome.wustl.edu 37 7 71177023 71177023 + Frame_Shift_Del DEL G G - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022479.1 +1 reviewed p.G564fs 0.964 - - - - - - - - - HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins BAZ1B 9031 genome.wustl.edu 37 7 72856582 72856582 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032408.3 -1 validated p.G1466W 1.000 189 0% 153 39.9% 46 43.4% probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL BAZ1B 9031 genome.wustl.edu 37 7 72892038 72892038 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032408.3 -1 validated p.L585 0.995 21 0% 25 52% 5 20% - - - NULL PDAP1 11333 genome.wustl.edu 37 7 98995583 98995583 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014891.5 -1 validated p.A130V 1.000 370 0.3% 380 34.7% 167 40.1% benign(0.041) deleterious(0.04) neutral(0.351) HMMPfam_PP28 SLC12A9 56996 genome.wustl.edu 37 7 100463482 100463482 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020246.2 +1 validated p.P667H 1.000 33 0% 42 33.3% 22 54.5% probably_damaging(0.998) tolerated(0.53) deleterious(0.482) NULL MET 4233 genome.wustl.edu 37 7 116423476 116423476 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001127500.1 +1 reviewed p.A1269T 1.000 235 0% 168 38.1% 16 31.2% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like NAA38 51691 genome.wustl.edu 37 7 117825749 117825749 + Splice_Site SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_016200.4 +1 reviewed e2+1 1.000 537 0% 426 29.1% 0 - - - - - FLNC 2318 genome.wustl.edu 37 7 128487998 128487998 + Splice_Site SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001458.4 +1 reviewed e26-1 1.000 57 0% 55 43.6% 0 - - - - - FLNC 2318 genome.wustl.edu 37 7 128488661 128488661 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001458.4 +1 reviewed p.R1543W 1.000 137 0% 116 34.5% 3 0% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin WDR91 29062 genome.wustl.edu 37 7 134889080 134889080 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014149.3 -1 validated p.S277 0.000 185 0% 117 37.6% 12 25% - - - NULL PARP12 64761 genome.wustl.edu 37 7 139724428 139724428 + Missense_Mutation SNP A A T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022750.2 -1 provisional p.S680T 0.008 269 0% 248 35.9% 77 37.6% benign(0) tolerated(0.27) neutral(0.034) superfamily_ADP-ribosylation EPHB6 2051 genome.wustl.edu 37 7 142561883 142561883 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004445.3 +1 reviewed p.F109L 1.000 37 0% 29 37.9% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like FAM115C 285966 genome.wustl.edu 37 7 143400425 143400425 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001130025.1 +1 validated p.A113V 0.868 124 0% 117 13.7% 0 - benign(0.047) tolerated(1) neutral(0.003) NULL ARHGEF5 7984 genome.wustl.edu 37 7 144075893 144075893 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005435.3 +1 reviewed p.R1524* 1.000 352 0% 315 39.4% 26 19.2% - - - HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2 GIMAP4 55303 genome.wustl.edu 37 7 150269650 150269650 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018326.2 +1 reviewed p.L164 0.000 112 0% 112 40.2% 7 0% - - - HMMPfam_AIG1,superfamily_SSF52540 KCNH2 3757 genome.wustl.edu 37 7 150648143 150648143 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000238.2 -1 reviewed p.A671T 1.000 103 0% 82 37.8% 3 0% benign(0.216) tolerated(0.26) neutral(0.055) superfamily_cAMP-binding domain-like KCNH2 3757 genome.wustl.edu 37 7 150649557 150649557 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000238.2 -1 reviewed p.A505T 1.000 174 0% 165 37% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels KCNH2 3757 genome.wustl.edu 37 7 150654534 150654534 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000238.2 -1 reviewed p.V325M 0.997 210 0% 164 40.9% 1 100% benign(0.014) tolerated(0.2) neutral(0.050) NULL MLL3 58508 genome.wustl.edu 37 7 151860244 151860244 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_170606.2 -1 reviewed p.P3473Q 1.000 324 0% 252 35.7% 7 71.4% probably_damaging(1) - - NULL RP1L1 94137 genome.wustl.edu 37 8 10469900 10469900 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_178857.5 -1 validated p.E570K 0.000 22 0% 22 45.5% 0 - benign(0.001) tolerated(0.57) neutral(0.006) NULL RNF122 79845 genome.wustl.edu 37 8 33424237 33424237 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024787.2 -1 reviewed p.H2R 0.997 53 0% 52 40.4% 16 43.7% benign(0.261) tolerated(0.07) neutral(0.346) NULL ARMC1 55156 genome.wustl.edu 37 8 66525537 66525537 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018120.4 -1 validated p.G136V 1.000 311 0% 282 36.2% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL GRHL2 79977 genome.wustl.edu 37 8 102589723 102589723 + Missense_Mutation SNP G G C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024915.3 +1 reviewed p.A327P 1.000 177 0% 122 40.2% 32 31.2% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_CP2 FAM91A1 157769 genome.wustl.edu 37 8 124824792 124824792 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_144963.2 +1 validated p.P789S 1.000 335 0% 252 39.7% 5 20% benign(0) tolerated(0.72) neutral(0.002) NULL KIAA0196 9897 genome.wustl.edu 37 8 126088714 126088714 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014846.3 -1 reviewed p.R247H 1.000 173 0% 163 36.2% 11 0% possibly_damaging(0.913) deleterious(0.02) deleterious(0.748) HMMPfam_Strumpellin OC90 729330 genome.wustl.edu 37 8 133044206 133044206 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001080399.2 -1 validated p.R318Q 0.535 186 0% 173 39.9% 0 - possibly_damaging(0.925) deleterious(0) deleterious(0.818) HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2 ZFAT 57623 genome.wustl.edu 37 8 135613723 135613723 + Missense_Mutation SNP A A C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020863.3 -1 reviewed p.C747G 1.000 153 0% 134 41.8% 6 16.6% possibly_damaging(0.907) deleterious(0) deleterious(0.805) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FBXL6 26233 genome.wustl.edu 37 8 145580713 145580713 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012162.1 -1 reviewed p.D236 0.000 41 0% 61 32.8% 60 33.3% - - - HMMSmart_SM00367,superfamily_RNI-like CPSF1 29894 genome.wustl.edu 37 8 145619642 145619642 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_013291.2 -1 validated p.S1232 0.983 46 0% 58 36.2% 106 33.9% - - - HMMPfam_CPSF_A RANBP6 26953 genome.wustl.edu 37 9 6015579 6015579 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012416.2 -1 validated p.P10L 0.985 49 0% 45 48.9% 2 50% unknown(0) deleterious(0) - NULL IFNA8 3445 genome.wustl.edu 37 9 21409403 21409403 + Silent SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002170.3 +1 validated p.A76 0.933 139 0.7% 114 35.1% 0 - - - - HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines ENHO 375704 genome.wustl.edu 37 9 34521558 34521559 + Frame_Shift_Ins INS - - AG novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198573.2 -1 validated p.E45fs 0.605:0.053 - - - - - - - - - NULL RPP25L 138716 genome.wustl.edu 37 9 34611205 34611205 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_148178.1 -1 validated p.V30A 1.000 177 0% 148 37.8% 53 45.2% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Alba,superfamily_SSF82704 POLR1E 64425 genome.wustl.edu 37 9 37486091 37486091 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022490.1 +1 provisional p.A16V 0.989 173 0% 114 28.9% 10 50% benign(0.011) tolerated(0.81) neutral(0.001) NULL PGM5 5239 genome.wustl.edu 37 9 71094364 71094364 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_021965.3 +1 validated p.L397P 1.000 340 0% 282 37.2% 7 28.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase first 3 domains TRPM3 80036 genome.wustl.edu 37 9 73233869 73233869 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001007471.2 -1 reviewed p.D746N 1.000 124 0% 114 40.4% 0 - benign(0.218) tolerated(0.4) neutral(0.037) NULL C9orf47 286223 genome.wustl.edu 37 9 91606832 91606832 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001001938.3 +1 validated p.L180 0.000 229 0% 127 32.3% 0 - - - - NULL COL15A1 1306 genome.wustl.edu 37 9 101801007 101801007 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001855.3 +1 reviewed p.G823W 0.957 313 0% 211 36.5% 4 0% probably_damaging(1) - - HMMPfam_Collagen TGFBR1 7046 genome.wustl.edu 37 9 101891238 101891238 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004612.2 +1 reviewed p.H67Y 1.000 189 0% 130 36.9% 3 0% benign(0.002) deleterious(0) neutral(0.445) HMMPfam_Activin_recp,superfamily_Snake toxin-like TEX10 54881 genome.wustl.edu 37 9 103109439 103109439 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017746.3 -1 validated p.H144N 1.000 237 0% 173 42.2% 5 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_ARM-type_fold FKBP15 23307 genome.wustl.edu 37 9 115932150 115932151 + In_Frame_Ins INS - - TTC rs113480096 byCluster;by1000genomes TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015258.1 -1 validated p.946in_frame_insE 0.001:0.005 - - - - - - - - - NULL TTLL11 158135 genome.wustl.edu 37 9 124751605 124751605 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001139442.1 -1 validated p.V470I 0.988 189 0% 185 38.9% 4 50% benign(0.123) tolerated(0.18) neutral(0.066) HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like OR1Q1 158131 genome.wustl.edu 37 9 125377536 125377536 + Missense_Mutation SNP A A T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012364.1 +1 provisional p.I174F 0.389 315 0% 272 40.8% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_7tm_1,superfamily_SSF81321 ST6GALNAC6 30815 genome.wustl.edu 37 9 130653188 130653188 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_013443.3 -1 provisional p.S144 0.019 239 0% 217 41% 39 28.2% - - - HMMPfam_Glyco_transf_29 PIP5KL1 138429 genome.wustl.edu 37 9 130684308 130684308 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001135219.1 -1 validated p.L335M 0.731 66 0% 54 48.1% 3 0% benign(0.332) tolerated(0.23) neutral(0.145) HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like SPTAN1 6709 genome.wustl.edu 37 9 131394407 131394407 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001130438.1 +1 validated p.R2255H 1.000 14 0% 15 53.3% 144 36.1% probably_damaging(0.988) tolerated(0.09) deleterious(0.734) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin C9orf50 375759 genome.wustl.edu 37 9 132381903 132381903 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_199350.3 -1 validated p.S204 0.000 243 0% 185 41.6% 0 - - - - NULL NUP214 8021 genome.wustl.edu 37 9 134016082 134016082 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005085.2 +1 reviewed p.Q427* 0.507 211 0% 196 38.8% 10 10% - - - NULL NTNG2 84628 genome.wustl.edu 37 9 135073579 135073579 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032536.2 +1 validated p.T147M 0.998 36 0% 39 59% 0 - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) HMMPfam_Laminin_N,HMMSmart_SM00136 SETX 23064 genome.wustl.edu 37 9 135152522 135152522 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015046.5 -1 reviewed p.R2287Q 0.970 193 0% 221 19.5% 14 42.8% probably_damaging(1) deleterious(0.02) deleterious(0.883) superfamily_P-loop containing nucleoside triphosphate hydrolases LOC100289446 100289446 genome.wustl.edu 37 9 139265512 139265512 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab XM_002344209.1 +1 model p.Q219* 0.970 91 0% 85 11.8% 5 0% - - - NULL NOTCH1 4851 genome.wustl.edu 37 9 139397677 139397677 + Silent SNP C C T rs35980907 byCluster;byFrequency;by1000genomes TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017617.3 -1 reviewed p.S1708 0.644 94 0% 59 33.9% 22 54.5% - - - HMMPfam_NODP C9orf86 55684 genome.wustl.edu 37 9 139734632 139734633 + In_Frame_Ins INS - - AGA novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024718.4 +1 validated p.657in_frame_insK 0.999:1.000 - - - - - - - - - NULL ANAPC2 29882 genome.wustl.edu 37 9 140076140 140076140 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_013366.3 -1 reviewed p.A487 0.107 74 0% 53 28.3% 57 42.1% - - - HMMPfam_Cullin,superfamily_Cullin homology domain CUBN 8029 genome.wustl.edu 37 10 17152969 17152969 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001081.3 -1 reviewed p.V322I 0.996 148 0% 119 31.9% 0 - probably_damaging(0.998) tolerated(0.07) deleterious(0.793) HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin ARHGAP21 57584 genome.wustl.edu 37 10 24880575 24880575 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020824.3 -1 validated p.P1347H 1.000 151 0% 99 32.3% 5 40% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL LOC646360 646360 genome.wustl.edu 37 10 37626843 37626843 + RNA SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab XR_078419.1 +1 model NULL 1.000 154 0% 102 35.3% 0 - - - - - ZWINT 11130 genome.wustl.edu 37 10 58119527 58119527 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_007057.3 -1 reviewed p.T115I 0.000 187 0% 150 36% 54 37% possibly_damaging(0.815) deleterious(0.01) deleterious(0.713) NULL SUPV3L1 6832 genome.wustl.edu 37 10 70947427 70947427 + Missense_Mutation SNP T T G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003171.3 +1 provisional p.L163V 1.000 243 0% 204 31.4% 15 20% benign(0.3) tolerated(0.16) neutral(0.152) superfamily_SSF52540 AGAP5 729092 genome.wustl.edu 37 10 75434712 75434712 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001144000.1 -1 validated p.S569F 1.000 389 0% 302 11.3% 11 0% probably_damaging(0.97) deleterious(0.04) deleterious(0.761) HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,superfamily_Ankyrin repeat PTEN 5728 genome.wustl.edu 37 10 89692902 89692902 + Missense_Mutation SNP G G T rs121909218 TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000371953 +1 known p.G129V 1.000 335 0.6% 265 86.8% 5 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II DNTT 1791 genome.wustl.edu 37 10 98087331 98087331 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004088.3 +1 reviewed p.F327 0.120 349 0% 288 38.5% 0 - - - - HMMSmart_SM00483,HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase LOXL4 84171 genome.wustl.edu 37 10 100017543 100017543 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032211.6 -1 reviewed p.L375P 1.000 108 0% 92 37% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like NKX2-3 159296 genome.wustl.edu 37 10 101293016 101293016 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_145285.2 +1 reviewed p.A43V 0.982 104 0% 120 46.7% 1 0% possibly_damaging(0.497) tolerated(0.1) neutral(0.453) NULL CWF19L1 55280 genome.wustl.edu 37 10 102006559 102006559 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018294.4 -1 validated p.A281V 0.045 185 0% 153 26.1% 10 50% benign(0.045) tolerated(0.29) neutral(0.032) NULL PSD 5662 genome.wustl.edu 37 10 104165166 104165166 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002779.3 -1 provisional p.A755T 0.283 34 0% 32 31.2% 7 28.5% possibly_damaging(0.824) deleterious(0.05) deleterious(0.657) superfamily_PH domain-like PKP3 11187 genome.wustl.edu 37 11 396974 396974 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_007183.2 +1 reviewed p.P158H 0.102 20 0% 14 50% 36 41.6% probably_damaging(0.986) deleterious(0) deleterious(0.879) NULL INSC 387755 genome.wustl.edu 37 11 15134110 15134110 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001031853.3 +1 provisional p.A32V 0.917 217 0% 176 35.2% 0 - benign(0) tolerated(1) - PatternScan_PA2_HIS DEPDC7 91614 genome.wustl.edu 37 11 33054458 33054458 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001077242.1 +1 validated p.I429 1.000 270 0% 224 37.1% 1 0% - - - NULL PACSIN3 29763 genome.wustl.edu 37 11 47200814 47200814 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_016223.4 -1 reviewed p.R266C 0.960 98 0% 101 36.6% 78 38.4% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL OR4A5 81318 genome.wustl.edu 37 11 51411605 51411605 + Missense_Mutation SNP G G C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001005272.3 -1 validated p.T264S 0.013 90 0% 75 42.7% 0 - benign(0) tolerated(0.12) neutral(0.261) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like OR5T2 219464 genome.wustl.edu 37 11 56000556 56000556 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001004746.1 -1 provisional p.F36L 0.001 79 0% 64 29.7% 0 - benign(0) deleterious(0.01) neutral(0.406) superfamily_SSF81321 MS4A10 341116 genome.wustl.edu 37 11 60561576 60561576 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_206893.3 +1 validated p.T164 0.016 241 0% 163 43.6% 0 - - - - HMMPfam_CD20 PTGDR2 11251 genome.wustl.edu 37 11 60620716 60620716 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004778.2 -1 reviewed p.V160 0.549 55 0% 32 31.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like SCYL1 57410 genome.wustl.edu 37 11 65304600 65304601 + Splice_Site DEL GT GT - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 GT GT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020680.3 +1 reviewed e14+1 1.000:0.981 - - - - - - - - - - C11orf24 53838 genome.wustl.edu 37 11 68030295 68030295 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022338.3 -1 validated p.T56 0.000 121 0% 83 37.3% 38 47.3% - - - NULL ANO1 55107 genome.wustl.edu 37 11 70017046 70017046 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018043.5 +1 validated p.L751M 0.997 288 0% 298 33.9% 144 50% probably_damaging(0.988) deleterious(0.04) deleterious(0.786) HMMPfam_DUF590 OR7E87P 8586 genome.wustl.edu 37 11 71304933 71304935 + In_Frame_Del DEL TCG TCG - rs36047994 TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TCG TCG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000329336 +1 known p.V170in_frame_del 0.023:0.028:0.021 - - - - - - - - - HMMPfam_7tm_1,superfamily_SSF81321 NUMA1 4926 genome.wustl.edu 37 11 71724081 71724081 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006185.2 -1 validated p.R1490C 0.108 180 0% 149 49% 179 39.6% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) NULL ODZ4 26011 genome.wustl.edu 37 11 78467851 78467851 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001098816.2 -1 validated p.G919W 1.000 165 0% 152 41.4% 0 - probably_damaging(0.977) deleterious(0) deleterious(0.863) NULL FAT3 120114 genome.wustl.edu 37 11 92086576 92086576 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001008781.2 +1 validated p.R433Q 0.065 133 0.8% 119 38.7% 0 - benign(0.001) tolerated(0.61) neutral(0.004) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like CWF19L2 143884 genome.wustl.edu 37 11 107313684 107313684 + Missense_Mutation SNP T T A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152434.2 -1 validated p.D144V 0.065 403 0% 286 31.5% 3 33.3% benign(0.014) tolerated(0.11) neutral(0.272) NULL HEPACAM 220296 genome.wustl.edu 37 11 124794933 124794933 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152722.4 -1 validated p.V40M 0.046 102 0% 86 44.2% 0 - possibly_damaging(0.678) tolerated(0.06) deleterious(0.564) HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin KCNJ5 3762 genome.wustl.edu 37 11 128781631 128781631 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000890.3 +1 reviewed p.R155* 1.000 194 0.5% 162 40.1% 0 - - - - HMMPfam_IRK,superfamily_SSF81324 ST14 6768 genome.wustl.edu 37 11 130060578 130060578 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_021978.3 +1 reviewed p.H288 0.000 26 0% 28 28.6% 336 40.7% - - - HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB KCNA5 3741 genome.wustl.edu 37 12 5154642 5154642 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002234.2 +1 reviewed p.I443 0.892 339 0% 237 36.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels VWF 7450 genome.wustl.edu 37 12 6127546 6127546 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000552.3 -1 reviewed p.L1680I 0.124 42 0% 34 35.3% 8 0% possibly_damaging(0.675) deleterious(0.02) deleterious(0.623) NULL CHD4 1108 genome.wustl.edu 37 12 6711582 6711582 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001273.2 -1 reviewed p.R61Q 0.978 554 0% 530 25.3% 15 20% possibly_damaging(0.666) deleterious(0.03) deleterious(0.601) NULL ACSM4 341392 genome.wustl.edu 37 12 7469832 7469832 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001080454.1 +1 provisional p.Q240 1.000 233 0% 210 40.5% 0 - - - - HMMPfam_AMP-binding,superfamily_SSF56801 SLC2A14 144195 genome.wustl.edu 37 12 7984225 7984225 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_153449.2 -1 provisional p.G106R 1.000 159 0% 172 41.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter DDX11 1663 genome.wustl.edu 37 12 31254802 31254802 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152438.1 +1 reviewed p.C696 0.896 772 0% 535 33.1% 13 53.8% - - - NULL PRPF40B 25766 genome.wustl.edu 37 12 50028324 50028324 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001031698.1 +1 provisional p.V292I 1.000 153 0% 118 33.1% 25 36% possibly_damaging(0.512) tolerated(0.26) neutral(0.206) HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain KRT78 196374 genome.wustl.edu 37 12 53238401 53238401 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_173352.2 -1 reviewed p.R288Q 0.975 160 0% 123 26.8% 0 - probably_damaging(0.999) tolerated(1) deleterious(0.490) HMMPfam_Filament DPY19L2 283417 genome.wustl.edu 37 12 63987907 63987907 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_173812.4 -1 validated p.R514C 0.934 87 0% 76 38.2% 1 0% probably_damaging(0.996) deleterious(0.04) deleterious(0.810) HMMPfam_DUF2211 HCFC2 29915 genome.wustl.edu 37 12 104487281 104487281 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_013320.2 +1 reviewed p.L468 0.209 188 0% 198 34.3% 4 25% - - - HMMSmart_SM00060,superfamily_Fibronectin type III TPCN1 53373 genome.wustl.edu 37 12 113698217 113698217 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001143819.1 +1 validated p.S125G 0.017 137 0% 127 34.6% 10 20% benign(0) tolerated(0.42) neutral(0.014) NULL HIP1R 9026 genome.wustl.edu 37 12 123343633 123343633 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003959.1 +1 validated p.C728 0.819 28 0% 30 30% 21 42.8% - - - NULL NCOR2 9612 genome.wustl.edu 37 12 124817009 124817009 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006312.3 -1 validated p.M2261V 0.998 380 0% 271 40.6% 97 30.9% possibly_damaging(0.916) tolerated(0.08) deleterious(0.667) NULL TMEM132B 114795 genome.wustl.edu 37 12 125900193 125900193 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_052907.2 +1 provisional p.C354Y 1.000 108 0% 73 35.6% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) NULL TMEM132C 92293 genome.wustl.edu 37 12 128899822 128899822 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001136103.2 +1 provisional p.G99C 0.000 70 0% 66 42.4% 0 - benign(0.001) tolerated(0.08) neutral(0.300) NULL GOLGA3 2802 genome.wustl.edu 37 12 133351849 133351849 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005895.3 -1 reviewed p.M1341V 0.000 233 0% 180 25.6% 31 51.6% benign(0) tolerated(0.36) neutral(0.020) NULL TUBA3C 7278 genome.wustl.edu 37 13 19748295 19748295 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006001.1 -1 reviewed p.G354D 1.000 98 0% 94 27.7% 0 - probably_damaging(0.971) deleterious(0) deleterious(0.857) superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C PARP4 143 genome.wustl.edu 37 13 25034183 25034183 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006437.3 -1 reviewed p.T742N 0.002 223 0% 200 34.5% 21 47.6% benign(0.013) tolerated(0.45) neutral(0.013) NULL MTUS2 23281 genome.wustl.edu 37 13 29599666 29599666 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001033602.2 +1 validated p.S287 0.000 89 0% 92 47.8% 0 - - - - NULL CDADC1 81602 genome.wustl.edu 37 13 49841858 49841858 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_030911.2 +1 validated p.P221 0.506 86 0% 84 35.7% 8 37.5% - - - NULL GUCY1B2 2974 genome.wustl.edu 37 13 51590372 51590372 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000389600 -1 known p.G363E 1.000 306 0% 240 40.4% 0 - - - - HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase PCDH9 5101 genome.wustl.edu 37 13 67205541 67205541 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_203487.2 -1 reviewed p.S1047 1.000 123 0% 102 12.7% 0 - - - - NULL FBXL3 26224 genome.wustl.edu 37 13 77581534 77581534 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_012158.2 -1 reviewed p.R345W 1.000 281 0% 227 34.4% 20 45% probably_damaging(0.992) deleterious(0.03) deleterious(0.812) superfamily_SSF52047 POU4F1 5457 genome.wustl.edu 37 13 79175965 79175965 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006237.3 -1 validated p.L282P 1.000 34 0% 20 30% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,superfamily_lambda repressor-like DNA-binding domains TMTC4 84899 genome.wustl.edu 37 13 101288809 101288809 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032813.2 -1 validated p.C393 1.000 194 0% 154 40.3% 16 25% - - - NULL ERCC5 2073 genome.wustl.edu 37 13 103514757 103514757 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000123.2 +1 reviewed p.R420S 0.001 185 0% 160 35.6% 17 52.9% benign(0) tolerated(0.29) neutral(0.029) superfamily_PIN domain-like MYO16 23026 genome.wustl.edu 37 13 109379842 109379842 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015011.1 +1 validated p.N118D 1.000 348 0% 287 40.1% 2 0% probably_damaging(0.982) deleterious(0) deleterious(0.871) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat ARHGEF7 8874 genome.wustl.edu 37 13 111870106 111870106 + Silent SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001113511.1 +1 reviewed p.S204 0.740 237 0% 176 44.9% 15 53.3% - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain ABHD4 63874 genome.wustl.edu 37 14 23072483 23072483 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022060.2 +1 validated p.D101N 1.000 100 0% 104 43.3% 45 24.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Abhydrolase_1,superfamily_SSF53474 REC8 9985 genome.wustl.edu 37 14 24648851 24648851 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001048205.1 +1 reviewed p.P456L 0.977 233 0% 160 25.6% 79 17.7% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL SPTB 6710 genome.wustl.edu 37 14 65239488 65239488 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001024858.2 -1 reviewed p.T1788M 1.000 49 0% 38 26.3% 2 50% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin RAB15 376267 genome.wustl.edu 37 14 65415221 65415221 + Frame_Shift_Del DEL G G - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198686.2 -1 validated p.V208fs 0.998 - - - - - - - - - NULL TMEM63C 57156 genome.wustl.edu 37 14 77715147 77715147 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020431.2 +1 validated p.A601V 1.000 413 0% 312 43.9% 0 - probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_DUF221 ALKBH1 8846 genome.wustl.edu 37 14 78146249 78146249 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006020.2 -1 reviewed p.G174C 1.000 130 0% 102 40.2% 4 25% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PSMC1 5700 genome.wustl.edu 37 14 90730172 90730172 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002802.2 +1 reviewed p.S149L 1.000 103 0% 101 36.6% 51 41.1% benign(0.011) tolerated(0.14) neutral(0.250) NULL JAG2 3714 genome.wustl.edu 37 14 105615413 105615413 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002226.3 -1 reviewed p.C589 0.963 10 0% 13 46.2% 18 38.8% - - - HMMSmart_SM00179,HMMSmart_SM00181 C15orf2 23742 genome.wustl.edu 37 15 24922024 24922024 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018958.2 +1 reviewed p.P337L 0.000 66 0% 43 48.8% 0 - probably_damaging(0.995) deleterious(0.04) deleterious(0.806) NULL HERC2 8924 genome.wustl.edu 37 15 28422597 28422597 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004667.4 -1 reviewed p.G3074 0.991 175 0% 142 24.6% 13 38.4% - - - HMMPfam_RCC1,superfamily_RCC1/BLIP-II AQR 9716 genome.wustl.edu 37 15 35210541 35210541 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014691.2 -1 validated p.Q420 0.992 192 0% 172 36% 5 60% - - - NULL ZNF609 23060 genome.wustl.edu 37 15 64966167 64966167 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015042.1 +1 provisional p.G372C 1.000 88 0% 66 39.4% 6 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PIAS1 8554 genome.wustl.edu 37 15 68434293 68434293 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_016166.1 +1 reviewed p.N160S 1.000 179 0% 160 35.6% 9 66.6% benign(0.002) tolerated(0.81) neutral(0.001) NULL PARP6 56965 genome.wustl.edu 37 15 72558250 72558250 + Missense_Mutation SNP G G C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020214.2 -1 provisional p.S55C 1.000 240 0% 226 37.6% 37 56.7% possibly_damaging(0.862) deleterious(0) deleterious(0.778) NULL AGBL1 123624 genome.wustl.edu 37 15 86813208 86813208 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152336.2 +1 validated p.F587L 1.000 243 0% 152 22.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NTRK3 4916 genome.wustl.edu 37 15 88522671 88522671 + Missense_Mutation SNP G G C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001007156.1 -1 reviewed p.P582A 1.000 185 0% 137 38% 0 - possibly_damaging(0.543) - - NULL C15orf42 90381 genome.wustl.edu 37 15 90162953 90162953 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152259.3 +1 validated p.R1012* 1.000 198 1.5% 169 31.4% 3 0% - - - NULL ZNF774 342132 genome.wustl.edu 37 15 90904468 90904468 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001004309.2 +1 validated p.R469C 0.734 109 0% 93 35.5% 1 0% possibly_damaging(0.492) tolerated(0.12) neutral(0.424) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ANKS3 124401 genome.wustl.edu 37 16 4764173 4764173 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_133450.2 -1 provisional p.D196 0.658 201 0% 177 41.2% 12 33.3% - - - HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK ABCC1 4363 genome.wustl.edu 37 16 16232347 16232347 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004996.3 +1 reviewed p.R1473 0.911 106 0% 116 32.8% 79 24% - - - HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases TNRC6A 27327 genome.wustl.edu 37 16 24800899 24800899 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014494.2 +1 reviewed p.P312 0.062 163 0% 134 34.3% 5 60% - - - NULL APOBR 55911 genome.wustl.edu 37 16 28507472 28507472 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018690.2 +1 reviewed p.D361 0.000 63 0% 62 27.4% 2 50% - - - NULL RABEP2 79874 genome.wustl.edu 37 16 28922240 28922240 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024816.2 -1 validated p.S353N 1.000 62 0% 62 41.9% 38 42.1% possibly_damaging(0.737) tolerated(0.06) deleterious(0.592) HMMPfam_Rab5-bind ORC6 23594 genome.wustl.edu 37 16 46726293 46726293 + Splice_Site SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014321.2 +1 reviewed e3-1 0.998 199 0.5% 152 42.8% 0 - - - - - PAPD5 64282 genome.wustl.edu 37 16 50251523 50251523 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001040284.2 +1 validated p.F105 1.000 93 0% 110 13.6% 1 0% - - - HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase ZFHX3 463 genome.wustl.edu 37 16 72830903 72830904 + Frame_Shift_Del DEL CT CT - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006885.3 -1 reviewed p.R1893fs 0.999:0.991 - - - - - - - - - NULL LDHD 197257 genome.wustl.edu 37 16 75147502 75147502 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_153486.2 -1 reviewed p.E362 0.917 34 0% 30 63.3% 43 48.8% - - - HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain KLHL36 79786 genome.wustl.edu 37 16 84695491 84695491 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024731.2 +1 provisional p.A535T 1.000 42 2.4% 40 50% 45 31.1% benign(0.001) tolerated(0.15) neutral(0.241) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain JPH3 57338 genome.wustl.edu 37 16 87723471 87723471 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020655.2 +1 reviewed p.S502L 0.893 15 0% 14 57.1% 0 - benign(0.002) tolerated(1) - NULL SPG7 6687 genome.wustl.edu 37 16 89598338 89598338 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003119.2 +1 reviewed p.G338 0.074 113 0% 121 35.5% 41 43.9% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases TCF25 22980 genome.wustl.edu 37 16 89977619 89977619 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000263347 +1 known p.R473C 0.887 49 0% 32 46.9% 165 41.8% unknown(0) - - NULL CAMTA2 23125 genome.wustl.edu 37 17 4883018 4883018 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015099.3 -1 validated p.S533 0.036 155 0% 115 32.2% 17 47% - - - HMMPfam_TIG,superfamily_E set domains SENP3 26168 genome.wustl.edu 37 17 7467982 7467982 + Silent SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000321337 +1 known p.Q252 0.996 195 0% 197 47.7% 35 34.2% - - - NULL MYH3 4621 genome.wustl.edu 37 17 10551917 10551917 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002470.2 -1 reviewed p.F231S 0.997 268 0% 242 39.7% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540 DNAH9 1770 genome.wustl.edu 37 17 11772537 11772537 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001372.3 +1 reviewed p.V3340 0.086 141 0% 121 36.4% 5 40% - - - NULL PMP22 5376 genome.wustl.edu 37 17 15142916 15142916 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000304.2 -1 reviewed p.S64Y 1.000 102 0% 88 37.5% 17 17.6% possibly_damaging(0.835) deleterious(0) deleterious(0.763) HMMPfam_PMP22_Claudin FLCN 201163 genome.wustl.edu 37 17 17127309 17127309 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_144997.5 -1 reviewed p.L182P 1.000 64 0% 46 41.3% 30 40% probably_damaging(1) deleterious(0) deleterious(0.945) NULL UTP6 55813 genome.wustl.edu 37 17 30216345 30216345 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_018428.2 -1 validated p.A168T 1.000 234 0% 189 48.7% 11 63.6% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMSmart_HAT,superfamily_SSF48452 KRTAP1-4 728255 genome.wustl.edu 37 17 39186038 39186038 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000377747 -1 known p.C98Y 1.000 88 0% 45 35.6% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_Keratin_B2 HAP1 9001 genome.wustl.edu 37 17 39881156 39881156 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_177977.2 -1 reviewed p.M553V 0.000 326 0% 261 44.1% 0 - benign(0.032) deleterious(0.01) neutral(0.407) NULL MAP3K14 9020 genome.wustl.edu 37 17 43364209 43364209 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003954.2 -1 reviewed p.T247M 0.003 43 0% 41 53.7% 6 33.3% - - - NULL TEX14 56155 genome.wustl.edu 37 17 56676693 56676693 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198393.2 -1 reviewed p.A671 0.000 341 0% 310 33.5% 0 - - - - NULL DDX5 1655 genome.wustl.edu 37 17 62496744 62496744 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004396.3 -1 validated p.D455G 1.000 355 0% 276 36.6% 351 41.8% benign(0.045) deleterious(0.04) neutral(0.351) superfamily_P-loop containing nucleoside triphosphate hydrolases BPTF 2186 genome.wustl.edu 37 17 65850651 65850651 + Silent SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_182641.3 +1 reviewed p.L403 0.943 514 0% 489 10.8% 2 0% - - - HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD DNAH17 8632 genome.wustl.edu 37 17 76457792 76457792 + Splice_Site SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000389840 -1 known e57-2 0.998 64 0% 62 48.4% 0 - - - - - RNF213 57674 genome.wustl.edu 37 17 78357598 78357598 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000508628 +1 known p.R4731Q 0.000 263 0% 230 44.3% 19 31.5% benign(0.001) tolerated(0.44) neutral(0.013) NULL SLC38A10 124565 genome.wustl.edu 37 17 79225390 79225390 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001037984.1 -1 validated p.A656 0.000 23 0% 24 37.5% 168 47% - - - NULL TYMS 7298 genome.wustl.edu 37 18 670816 670816 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001071.2 +1 reviewed p.I227 0.787 184 0% 161 38.5% 92 33.6% - - - HMMPfam_Thymidylat_synt,superfamily_Thymidylate synthase/dCMP hydroxymethylase DLGAP1 9229 genome.wustl.edu 37 18 3879376 3879376 + Silent SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004746.2 -1 provisional p.S231 0.916 81 0% 60 43.3% 0 - - - - NULL APCDD1 147495 genome.wustl.edu 37 18 10485748 10485748 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_153000.4 +1 validated p.R355M 0.991 70 0% 83 36.1% 72 9.7% possibly_damaging(0.492) deleterious(0.01) deleterious(0.570) NULL LAMA3 3909 genome.wustl.edu 37 18 21413807 21413807 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198129.1 +1 reviewed p.R947W 0.047 243 0% 189 36.5% 0 - benign(0.001) deleterious(0.02) neutral(0.383) NULL DSG3 1830 genome.wustl.edu 37 18 29041274 29041274 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001944.2 +1 reviewed p.N300D 1.000 176 0% 124 37.1% 0 - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin PIK3C3 5289 genome.wustl.edu 37 18 39575940 39575940 + Silent SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002647.2 +1 validated p.A291 0.997 132 0% 113 38.1% 4 0% - - - HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold C19orf6 91304 genome.wustl.edu 37 19 1014260 1014260 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001033026.1 -1 validated p.S146 0.000 84 0% 73 35.6% 104 47.1% - - - HMMPfam_Membralin STK11 6794 genome.wustl.edu 37 19 1223071 1223072 + Frame_Shift_Del DEL TG TG - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 TG TG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000455.4 +1 reviewed p.V337fs 0.323:1.000 - - - - - - - - - NULL TMPRSS9 360200 genome.wustl.edu 37 19 2416648 2416648 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_182973.1 +1 provisional p.P586T 0.383 75 0% 50 26% 0 - probably_damaging(0.999) tolerated(0.65) deleterious(0.493) HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases LMNB2 84823 genome.wustl.edu 37 19 2432450 2432450 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032737.2 -1 reviewed p.T498 0.749 304 0% 199 38.7% 34 32.3% - - - HMMPfam_IF_tail,superfamily_SSF74853 TJP3 27134 genome.wustl.edu 37 19 3736178 3736178 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014428.1 +1 provisional p.T414 0.000 79 0% 64 31.2% 95 43.1% - - - superfamily_PDZ domain-like CD70 970 genome.wustl.edu 37 19 6586324 6586324 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001252.3 -1 reviewed p.R97C 0.178 153 0% 119 35.3% 0 - probably_damaging(0.988) deleterious(0) deleterious(0.882) HMMPfam_TNF,HMMSmart_SM00207,PatternScan_TNF_1,superfamily_TNF-like MUC16 94025 genome.wustl.edu 37 19 9061630 9061630 + Missense_Mutation SNP G G T rs113691287 TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024690.2 -1 validated p.R8606S 0.000 383 0% 339 44.5% 3 66.6% unknown(0) - - NULL MUC16 94025 genome.wustl.edu 37 19 9065164 9065164 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024690.2 -1 validated p.P7428S 0.000 358 0% 292 32.5% 2 100% unknown(0) - - NULL FBXL12 54850 genome.wustl.edu 37 19 9922067 9922067 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017703.1 -1 provisional p.P162 0.086 38 0% 44 34.1% 29 41.3% - - - superfamily_RNI-like DOCK6 57572 genome.wustl.edu 37 19 11348967 11348967 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020812.2 -1 validated p.V553M 1.000 51 0% 36 36.1% 4 0% probably_damaging(0.994) deleterious(0) deleterious(0.897) NULL RGL3 57139 genome.wustl.edu 37 19 11515998 11515998 + Splice_Site SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001035223.2 -1 validated e8+1 1.000 102 0% 100 50% 2 0% - - - - TMEM38A 79041 genome.wustl.edu 37 19 16791335 16791335 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024074.1 +1 provisional p.A137T 1.000 165 0% 162 32.1% 7 28.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF714 KIAA1683 80726 genome.wustl.edu 37 19 18378027 18378027 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001145304.1 -1 validated p.T108M 0.974 86 0% 106 36.8% 1 100% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases MAU2 23383 genome.wustl.edu 37 19 19449687 19449687 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015329.3 +1 validated p.A164T 1.000 229 0% 197 39.6% 13 46.1% probably_damaging(0.997) deleterious(0.01) deleterious(0.872) HMMPfam_Cohesin_load,superfamily_TPR-like FFAR3 2865 genome.wustl.edu 37 19 35849967 35849967 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005304.3 +1 validated p.A59T 0.000 464 0% 381 15.5% 0 - benign(0) tolerated(0.13) neutral(0.253) HMMPfam_7tm_1,superfamily_SSF81321 MLL4 9757 genome.wustl.edu 37 19 36224759 36224759 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014727.1 +1 reviewed p.W2382* 1.000 197 0% 161 42.9% 27 51.8% - - - NULL MLL4 9757 genome.wustl.edu 37 19 36229410 36229410 + Missense_Mutation SNP G G C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014727.1 +1 reviewed p.K2700N 1.000 96 0% 73 32.9% 77 58.4% probably_damaging(0.989) - - HMMSmart_SM00508,superfamily_SET domain LOC644189 644189 genome.wustl.edu 37 19 36912850 36912850 + RNA SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab XR_016949.3 +1 model NULL 1.000 11 0.000 9 0.444 0 - - - - - ACTN4 81 genome.wustl.edu 37 19 39200922 39200922 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004924.3 +1 reviewed p.D253 1.000 116 0% 110 33.6% 152 33.5% - - - HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology PAF1 54623 genome.wustl.edu 37 19 39877205 39877205 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_019088.2 -1 provisional p.R367Q 1.000 386 0% 411 43.3% 53 45.2% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Paf1 FCGBP 8857 genome.wustl.edu 37 19 40384077 40384077 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003890.2 -1 validated p.A3178V 0.000 314 0% 296 19.3% 17 5.8% unknown(0) tolerated(0.18) - superfamily_Cysrich_TIL,HMMPfam_TIL FCGBP 8857 genome.wustl.edu 37 19 40392058 40392058 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003890.2 -1 validated p.N2776 0.990 189 0% 197 14.7% 18 11.1% - - - superfamily_Cysrich_TIL,HMMPfam_TIL HIPK4 147746 genome.wustl.edu 37 19 40889771 40889771 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_144685.3 -1 provisional p.H247Q 1.000 264 0% 275 28% 0 - benign(0.027) tolerated(0.14) neutral(0.251) HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase SPTBN4 57731 genome.wustl.edu 37 19 40998912 40998912 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020971.2 +1 reviewed p.R180C 0.921 141 0% 96 39.6% 2 50% probably_damaging(0.996) deleterious(0) deleterious(0.906) superfamily_Calponin-homology domain CH-domain ADCK4 79934 genome.wustl.edu 37 19 41220449 41220449 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_024876.3 -1 validated p.G30V 0.871 99 0% 79 44.3% 9 22.2% possibly_damaging(0.837) tolerated(0.12) deleterious(0.580) NULL CIC 23152 genome.wustl.edu 37 19 42798999 42798999 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015125.3 +1 validated p.A1495T 1.000 140 0% 145 33.1% 65 38.4% benign(0.181) tolerated(0.21) neutral(0.060) NULL SNRNP70 6625 genome.wustl.edu 37 19 49611304 49611304 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003089.4 +1 validated p.K306N 1.000 10 0% 11 45.5% 253 36.3% unknown(0) tolerated(0.06) - NULL GPR32 2854 genome.wustl.edu 37 19 51274182 51274182 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001506.1 +1 provisional p.L109F 0.039 389 0% 353 44.2% 0 - benign(0.002) tolerated(1) - HMMPfam_7tm_1,superfamily_SSF81321 CEACAM18 729767 genome.wustl.edu 37 19 51983758 51983758 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001080405.1 +1 provisional p.S136N 0.607 210 0% 202 45% 0 - probably_damaging(0.999) tolerated(0.07) deleterious(0.809) HMMSmart_SM00409,superfamily_Immunoglobulin NCR1 9437 genome.wustl.edu 37 19 55424388 55424388 + RNA SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NR_027041.1 +1 validated NULL 0.000 25 0% 35 48.6% 0 - - - - - ZNF416 55659 genome.wustl.edu 37 19 58085013 58085015 + In_Frame_Del DEL CTT CTT - novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 CTT CTT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_017879.1 -1 provisional p.E86in_frame_del 0.002:0.040:0.054 - - - - - - - - - NULL C20orf96 140680 genome.wustl.edu 37 20 259881 259881 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_153269.1 -1 predicted p.I133V 0.835 97 0% 88 39.8% 44 40.9% probably_damaging(0.971) deleterious(0) deleterious(0.857) NULL ATRN 8455 genome.wustl.edu 37 20 3564713 3564713 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_139321.2 +1 reviewed p.T978M 1.000 124 0% 115 46.1% 35 48.5% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_PSI,HMMSmart_SM00423 MAVS 57506 genome.wustl.edu 37 20 3846537 3846537 + Nonsense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020746.3 +1 validated p.E456* 0.963 63 0% 81 33.3% 16 31.2% - - - NULL TMX4 56255 genome.wustl.edu 37 20 7963108 7963108 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_021156.2 -1 provisional p.E280 0.581 515 0% 470 39.1% 93 39.7% - - - NULL PCSK2 5126 genome.wustl.edu 37 20 17208058 17208058 + Silent SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002594.2 +1 reviewed p.V36 1.000 364 0% 322 14% 0 - - - - superfamily_Protease propeptides/inhibitors FOXA2 3170 genome.wustl.edu 37 20 22562757 22562758 + Frame_Shift_Ins INS - - GT novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_021784.4 -1 reviewed p.H374fs 1.000:1.000 - - - - - - - - - NULL SSTR4 6754 genome.wustl.edu 37 20 23016633 23016633 + Nonsense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001052.2 +1 validated p.W171* 1.000 52 0% 47 14.9% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 NDRG3 57446 genome.wustl.edu 37 20 35317081 35317081 + Splice_Site SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032013.2 -1 validated e3+1 1.000 196 0% 195 37.9% 0 - - - - - MYBL2 4605 genome.wustl.edu 37 20 42331157 42331157 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_002466.2 +1 reviewed p.K327E 0.993 219 0% 195 41% 58 62% benign(0.054) tolerated(0.23) neutral(0.045) NULL ZNF335 63925 genome.wustl.edu 37 20 44590818 44590818 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_022095.3 -1 reviewed p.H513Y 1.000 129 0% 103 41.7% 15 60% possibly_damaging(0.95) deleterious(0) deleterious(0.838) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers EYA2 2139 genome.wustl.edu 37 20 45801464 45801464 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005244.4 +1 reviewed p.R383C 1.000 176 0% 240 21.7% 385 23.6% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hydrolase ENSG00000245952 0 genome.wustl.edu 37 20 47275808 47275809 + RNA DEL GA GA - rs141388612 by1000genomes TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000456747 +1 known NULL 0.002:0.000 - - - - - - - - - - CDH4 1002 genome.wustl.edu 37 20 60498692 60498692 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001794.2 +1 reviewed p.V520M 0.425 101 0% 83 42.2% 0 - possibly_damaging(0.894) tolerated(0.06) deleterious(0.674) HMMPfam_Cadherin,superfamily_Cadherin DIDO1 11083 genome.wustl.edu 37 20 61512169 61512169 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_033081.1 -1 reviewed p.S1713 0.000 76 0% 63 28.6% 16 50% - - - NULL RTEL1 51750 genome.wustl.edu 37 20 62309535 62309535 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032957.3 +1 reviewed p.K319N 1.000 230 0.4% 261 42.1% 5 20% possibly_damaging(0.945) deleterious(0) deleterious(0.834) NULL TCEA2 6919 genome.wustl.edu 37 20 62694737 62694737 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_003195.4 +1 reviewed p.A24 1.000 47 0% 28 25% 48 14.5% - - - HMMSmart_SM00509,HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70 SIK1 150094 genome.wustl.edu 37 21 44836856 44836856 + Silent SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_173354.3 -1 validated p.L706 0.962 14 0% 13 38.5% 25 44% - - - NULL ADARB1 104 genome.wustl.edu 37 21 46596384 46596384 + Silent SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015833.3 +1 validated p.G256 0.998 272 0.4% 218 40.8% 2 50% - - - HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like COL6A1 1291 genome.wustl.edu 37 21 47421967 47421967 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001848.2 +1 reviewed p.N683 0.001 27 0% 19 42.1% 308 41.5% - - - HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300 C21orf58 54058 genome.wustl.edu 37 21 47722414 47722414 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_058180.3 -1 validated p.C266Y 1.000 92 0% 77 20.8% 23 13% - - - NULL IL17RA 23765 genome.wustl.edu 37 22 17589697 17589697 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_014339.4 +1 reviewed p.E530K 0.999 39 0% 20 25% 11 36.3% probably_damaging(0.999) deleterious(0.04) deleterious(0.839) HMMPfam_SEFIR IGLV2-23 28813 genome.wustl.edu 37 22 23040825 23040825 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000390306 +1 known p.T91 0.002 244 0% 205 36.6% 32 0% - - - HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin SGSM1 129049 genome.wustl.edu 37 22 25270413 25270413 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001039948.2 +1 validated p.S441 0.000 264 0% 216 44.9% 0 - - - - NULL MGAT3 4248 genome.wustl.edu 37 22 39884264 39884264 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001098270.1 +1 reviewed p.L304 1.000 20 0% 26 38.5% 4 0% - - - HMMPfam_Glyco_transf_17 TCF20 6942 genome.wustl.edu 37 22 42564700 42564700 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005650.1 -1 reviewed p.A1948T 1.000 152 0% 177 37.3% 17 41.1% benign(0) tolerated(0.37) neutral(0.019) NULL SAMM50 25813 genome.wustl.edu 37 22 44373840 44373840 + Splice_Site SNP T T G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015380.4 +1 validated e10+2 1.000 141 0% 158 44.3% 10 100% - - - - PRR5 55615 genome.wustl.edu 37 22 45133113 45133113 + Nonsense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_181333.2 +1 reviewed p.Q385* 1.000 59 0% 51 45.1% 38 55.2% - - - NULL TUBGCP6 85378 genome.wustl.edu 37 22 50659504 50659504 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_020461.3 -1 reviewed p.S1095L 0.996 132 0% 106 29.2% 9 55.5% possibly_damaging(0.887) deleterious(0.02) deleterious(0.730) HMMPfam_Spc97_Spc98 HDAC10 83933 genome.wustl.edu 37 22 50687179 50687179 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_032019.5 -1 validated p.G273E 1.000 76 0% 83 41% 56 46.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase BMX 660 genome.wustl.edu 37 X 15540478 15540478 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001721.6 +1 reviewed p.P174S 0.998 235 0% 170 40.6% 11 27.2% benign(0.047) tolerated(0.58) neutral(0.008) NULL MAP3K15 389840 genome.wustl.edu 37 X 19389182 19389182 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001001671.3 -1 validated p.V574L 1.000 35 0% 23 47.8% 0 - possibly_damaging(0.501) deleterious(0.01) deleterious(0.573) NULL ZNF645 158506 genome.wustl.edu 37 X 22291875 22291875 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_152577.2 +1 provisional p.P256H 0.000 52 0% 52 36.5% 0 - probably_damaging(0.991) deleterious(0) deleterious(0.889) NULL SLC38A5 92745 genome.wustl.edu 37 X 48319079 48319079 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_033518.2 -1 validated p.V342M 0.998 95 0% 118 50% 1 0% probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Aa_trans PRICKLE3 4007 genome.wustl.edu 37 X 49032132 49032132 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006150.3 -1 reviewed p.A580S 0.058 115 0% 128 42.2% 34 0% probably_damaging(0.996) deleterious(0.02) deleterious(0.845) NULL MED12 9968 genome.wustl.edu 37 X 70354254 70354254 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_005120.2 +1 reviewed p.T1555 0.081 122 0% 124 45.2% 54 83.3% - - - NULL NHSL2 340527 genome.wustl.edu 37 X 71358882 71358882 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001013627.2 +1 provisional p.R129Q 1.000 20 0% 25 28% 0 - probably_damaging(0.994) deleterious(0.04) deleterious(0.801) NULL SLC16A2 6567 genome.wustl.edu 37 X 73641340 73641340 + Silent SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006517.3 +1 reviewed p.G30 0.987 40 0% 35 22.9% 0 - - - - NULL TAF9B 51616 genome.wustl.edu 37 X 77393464 77393464 + Silent SNP T T G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_015975.4 -1 reviewed p.R89 1.000 340 0% 310 39.7% 12 0% - - - HMMPfam_TFIID-31kDa XKRX 402415 genome.wustl.edu 37 X 100182967 100182967 + Silent SNP A A C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_212559.2 -1 reviewed p.P122 0.995 70 0% 59 37.3% 1 0% - - - NULL TCEAL3 85012 genome.wustl.edu 37 X 102864096 102864096 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001006933.1 +1 reviewed p.K35R 0.000 902 0% 804 39.7% 57 91.2% probably_damaging(0.995) deleterious(0.04) deleterious(0.806) HMMPfam_TFA NRK 203447 genome.wustl.edu 37 X 105153427 105153427 + Silent SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198465.2 +1 validated p.V598 0.994 261 0% 203 32% 0 - - - - NULL NRK 203447 genome.wustl.edu 37 X 105190347 105190347 + Missense_Mutation SNP T T C novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_198465.2 +1 validated p.L1415P 0.999 252 0% 182 35.7% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_CNH,HMMSmart_SM00036 TEX13B 56156 genome.wustl.edu 37 X 107225309 107225309 + Missense_Mutation SNP C C T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_031273.2 -1 reviewed p.V17M 0.007 225 0% 167 41.3% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL MIR1277 100302214 genome.wustl.edu 37 X 117520365 117520366 + RNA INS - - AT novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab ENST00000408536 +1 known NULL 1.000:0.986 - - - - - - - - - - WDR44 54521 genome.wustl.edu 37 X 117540870 117540870 + Missense_Mutation SNP A A G novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_019045.4 +1 reviewed p.S472G 1.000 388 0% 341 38.7% 4 100% possibly_damaging(0.944) tolerated(0.33) neutral(0.413) superfamily_WD40 repeat-like ZBTB33 10009 genome.wustl.edu 37 X 119387392 119387392 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_006777.3 +1 reviewed p.R41Q 1.000 169 0.6% 133 36.1% 4 0% probably_damaging(0.996) tolerated(0.13) deleterious(0.714) HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB ATP1B4 23439 genome.wustl.edu 37 X 119496050 119496050 + Missense_Mutation SNP G G T novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_001142447.2 +1 reviewed p.R9S 1.000 246 0% 249 40.2% 0 - benign(0.31) deleterious(0) deleterious(0.541) NULL GPR50 9248 genome.wustl.edu 37 X 150348839 150348839 + Missense_Mutation SNP G G A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_004224.3 +1 reviewed p.V262I 0.985 224 0% 206 43.2% 0 - benign(0.057) tolerated(0.3) neutral(0.032) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ABCD1 215 genome.wustl.edu 37 X 152991298 152991298 + Missense_Mutation SNP C C A novel TCGA-D1-A176-01A-11D-A12J-09 TCGA-D1-A176-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc910cbe-48e6-4dc4-8938-23c9eda118e9 38fd829e-1233-4d49-b0c7-1f49c514bdab NM_000033.3 +1 reviewed p.P193T 1.000 78 0% 73 43.8% 5 0% possibly_damaging(0.808) tolerated(0.06) deleterious(0.627) HMMPfam_ABC_membrane_2