Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain C2orf68 388969 genome.wustl.edu 37 2 85836600 85836600 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001013649.3 -1 validated p.Y112 0.918 78 0% 53 28.3% 36 36.1% - - - HMMPfam_UPF0561 IL37 27178 genome.wustl.edu 37 2 113676249 113676249 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_014439.3 +1 reviewed p.G174R 0.018 175 0% 133 31.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine SEMA5B 54437 genome.wustl.edu 37 3 122658297 122658297 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001031702.2 -1 validated p.S150N 1.000 198 0% 121 35.5% 0 - benign(0.019) tolerated(0.24) neutral(0.038) HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain PIK3CA 5290 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G rs121913279 byCluster TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_006218.2 +1 reviewed p.H1047R 1.000 174 0% 40 35% 16 37.5% possibly_damaging(0.926) deleterious(0.03) deleterious(0.739) HMMSmart_PI3Kc,superfamily_Kinase_like GABRG1 2565 genome.wustl.edu 37 4 46043100 46043100 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_173536.3 -1 reviewed p.R435C 1.000 281 0% 51 27.5% 0 - benign(0.004) deleterious(0) neutral(0.445) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM MLF1IP 79682 genome.wustl.edu 37 4 185646136 185646136 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_024629.3 -1 validated p.P99S 0.009 429 0% 376 27.7% 6 50% benign(0.088) tolerated(0.25) neutral(0.043) NULL CDH18 1016 genome.wustl.edu 37 5 19571896 19571896 + Nonsense_Mutation SNP C C A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_004934.3 -1 reviewed p.G349* 1.000 194 0% 56 25% 0 - - - - HMMSmart_CA,superfamily_Cadherin CDK7 1022 genome.wustl.edu 37 5 68530824 68530824 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001799.3 +1 validated p.R8W 1.000 66 0% 52 32.7% 20 55% probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Kinase_like HIST1H2BD 3017 genome.wustl.edu 37 6 26158680 26158680 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_021063.2 +1 reviewed p.I95V 1.000 126 0% 146 32.9% 207 43.4% benign(0.002) tolerated(0.08) neutral(0.300) HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold EPB41L2 2037 genome.wustl.edu 37 6 131277183 131277183 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001431.3 -1 validated p.P148H 0.137 525 0% 324 31.5% 13 30.7% benign(0) deleterious(0) neutral(0.445) NULL CALCR 799 genome.wustl.edu 37 7 93108745 93108745 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001742.3 -1 reviewed p.V42 0.000 408 0% 71 22.5% 0 - - - - superfamily_SSF111418 CUX1 1523 genome.wustl.edu 37 7 101459313 101459313 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001913.2 +1 reviewed p.M1I 1.000 55 0% 47 17% 4 0% benign(0.001) deleterious(0) neutral(0.445) NULL FLNC 2318 genome.wustl.edu 37 7 128478482 128478482 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001458.4 +1 reviewed p.A403 0.395 85 0% 66 25.8% 0 - - - - HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin DPY19L4 286148 genome.wustl.edu 37 8 95800201 95800201 + Missense_Mutation SNP T T C novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_181787.2 +1 validated p.V643A 1.000 79 0% 45 33.3% 10 40% benign(0.111) deleterious(0.01) neutral(0.414) HMMPfam_DUF2211 EIF2C2 27161 genome.wustl.edu 37 8 141569592 141569592 + Missense_Mutation SNP A A G novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f ENST00000220592 -1 known p.I231T 1.000 208 0% 262 29.4% 1 0% possibly_damaging(0.729) tolerated(0.1) deleterious(0.552) superfamily_PAZ domain TLE1 7088 genome.wustl.edu 37 9 84235443 84235444 + Frame_Shift_Ins INS - - AA novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_005077.3 -1 provisional p.R209fs 0.998:1.000 - - - - - - - - - NULL BICD2 23299 genome.wustl.edu 37 9 95482729 95482729 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001003800.1 -1 reviewed p.H305 0.003 104 0% 95 22.1% 2 50% - - - HMMPfam_BicD GLUD1 2746 genome.wustl.edu 37 10 88854287 88854287 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_005271.3 -1 reviewed p.I80 1.000 38 0% 41 29.3% 13 38.4% unknown(0) deleterious(0.02) - superfamily_SSF53223 PTEN 5728 genome.wustl.edu 37 10 89692905 89692905 + Frame_Shift_Del DEL G G - rs121913292 TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f ENST00000371953 +1 known p.R130fs 1.000 - - - - - - - - - HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II OR52A1 23538 genome.wustl.edu 37 11 5173229 5173229 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_012375.2 -1 validated p.R124H 0.970 156 0% 95 11.6% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like NLRP10 338322 genome.wustl.edu 37 11 7982095 7982095 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_176821.3 -1 reviewed p.G355D 0.741 76 0% 46 15.2% 0 - probably_damaging(0.982) deleterious(0.03) deleterious(0.791) NULL SHANK2 22941 genome.wustl.edu 37 11 70319322 70319324 + In_Frame_Del DEL AGA AGA - novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 AGA AGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_012309.3 -1 reviewed p.S1139in_frame_del 0.515:0.995:0.987 - - - - - - - - - NULL IFFO1 25900 genome.wustl.edu 37 12 6657320 6657320 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001039670.1 -1 validated p.E456K 1.000 148 0% 120 29.2% 7 0% benign(0.209) tolerated(0.12) neutral(0.281) NULL PPP1R1A 5502 genome.wustl.edu 37 12 54971251 54971251 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f ENST00000379690 -1 known p.R128H 0.000 35 0% 27 22.2% 0 - benign(0.356) deleterious(0) deleterious(0.557) HMMPfam_DARPP-32 GNPTAB 79158 genome.wustl.edu 37 12 102158901 102158901 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_024312.4 -1 reviewed p.I598 0.997 534 0% 271 26.9% 5 40% - - - NULL DLGAP5 9787 genome.wustl.edu 37 14 55649132 55649132 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_014750.4 -1 validated p.R151W 0.062 450 0% 307 29% 3 66.6% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CYP19A1 1588 genome.wustl.edu 37 15 51503148 51503148 + Nonsense_Mutation SNP G G A rs72552260 byFrequency TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_000103.3 -1 reviewed p.R457* 0.992 231 0% 59 25.4% 0 - - - - HMMPfam_p450,superfamily_Cytochrome_P450 TSC2 7249 genome.wustl.edu 37 16 2122351 2122351 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_000548.3 +1 reviewed p.A736V 0.842 188 0% 133 27.1% 13 23% benign(0.014) tolerated(0.32) neutral(0.025) HMMPfam_Tuberin GPRC5B 51704 genome.wustl.edu 37 16 19883930 19883930 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_016235.1 -1 reviewed p.R80W 1.000 35 2.9% 36 25% 16 37.5% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_7tm_3 ITGAX 3687 genome.wustl.edu 37 16 31384684 31384684 + Silent SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_000887.3 +1 reviewed p.L827 1.000 60 0% 38 31.6% 34 0% - - - HMMPfam_Integrin_alpha2,superfamily_SSF69179 SLC6A2 6530 genome.wustl.edu 37 16 55690797 55690797 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_001043.3 +1 reviewed p.D64A 1.000 41 0% 35 11.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF CTCF 10664 genome.wustl.edu 37 16 67645168 67645168 + Nonsense_Mutation SNP G G T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_006565.2 +1 reviewed p.E145* 1.000 125 0% 104 27.9% 6 0% - - - NULL CTCF 10664 genome.wustl.edu 37 16 67650756 67650756 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_006565.2 +1 reviewed p.S354F 1.000 209 0% 128 23.4% 14 64.2% probably_damaging(0.98) deleterious(0.01) deleterious(0.830) HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers PSKH1 5681 genome.wustl.edu 37 16 67961465 67961465 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_006742.2 +1 validated p.R399C 1.000 38 0% 25 28% 15 26.6% benign(0.175) deleterious(0) neutral(0.461) NULL UNC45B 146862 genome.wustl.edu 37 17 33504593 33504593 + Missense_Mutation SNP G G T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_173167.2 +1 validated p.G742V 0.994 54 1.9% 40 27.5% 0 - benign(0.006) deleterious(0) neutral(0.445) superfamily_ARM repeat POLRMT 5442 genome.wustl.edu 37 19 630129 630129 + Missense_Mutation SNP A A C novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_005035.3 -1 reviewed p.V78G 0.002 29 0% 22 22.7% 7 0% benign(0.073) deleterious(0.02) neutral(0.388) NULL SHANK1 50944 genome.wustl.edu 37 19 51214734 51214734 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_016148.2 -1 validated p.R324Q 0.971 41 0% 40 42.5% 2 0% probably_damaging(0.978) tolerated(0.15) deleterious(0.661) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat RNF114 55905 genome.wustl.edu 37 20 48558160 48558160 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_018683.3 +1 validated p.R68H 1.000 88 0% 75 21.3% 50 30% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_RING/U-box CHRNA4 1137 genome.wustl.edu 37 20 61981658 61981658 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_000744.5 -1 reviewed p.R369W 1.000 71 0% 63 31.7% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM CDC45 8318 genome.wustl.edu 37 22 19496067 19496067 + Missense_Mutation SNP G G A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_003504.3 +1 reviewed p.R357H 1.000 201 0% 151 25.8% 5 20% probably_damaging(0.959) tolerated(0.08) deleterious(0.703) HMMPfam_CDC45 PLXNB2 23654 genome.wustl.edu 37 22 50728584 50728584 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_012401.2 -1 validated p.V144M 1.000 49 0% 40 25% 45 22.2% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema TAB3 257397 genome.wustl.edu 37 X 30870926 30870926 + Missense_Mutation SNP C C A novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_152787.3 -1 reviewed p.R560I 1.000 235 0% 96 28.1% 2 0% probably_damaging(0.974) deleterious(0.01) deleterious(0.822) NULL PRICKLE3 4007 genome.wustl.edu 37 X 49033258 49033258 + Missense_Mutation SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_006150.3 -1 reviewed p.A417T 0.000 42 0% 32 34.4% 5 0% benign(0.006) tolerated(1) - NULL GPR50 9248 genome.wustl.edu 37 X 150348764 150348764 + Silent SNP C C T novel TCGA-D1-A0ZV-01A-11D-A10M-09 TCGA-D1-A0ZV-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx cdf05c77-838f-4383-8544-f31566cde2b8 54995927-ffaa-4e07-840c-c1f4c875635f NM_004224.3 +1 reviewed p.L237 1.000 247 0% 183 32.2% 0 - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like