Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain BLZF1 8548 genome.wustl.edu 37 1 169345878 169345878 + Silent SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_003666.2 +1 validated p.K43 0.011 157 0% 134 50.7% - - - - - NULL NID1 4811 genome.wustl.edu 37 1 236201448 236201448 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_002508.2 -1 reviewed p.C414Y 1.000 99 0% 85 34.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin NCKAP5 344148 genome.wustl.edu 37 2 133541217 133541217 + Missense_Mutation SNP G G C novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_207363.2 -1 validated p.T1056S 0.003 191 0% 150 46% - - benign(0.253) deleterious(0) deleterious(0.471) NULL ARMC9 80210 genome.wustl.edu 37 2 232225535 232225536 + Frame_Shift_Ins INS - - G rs35889244 byCluster;by1000genomes TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000359743 +1 known p.P735fs 0.000:0.000 - - - - - - - - - NULL CTNNB1 1499 genome.wustl.edu 37 3 41266104 41266104 + Missense_Mutation SNP G G T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001098209.1 +1 reviewed p.G34V 1.000 102 0% 101 35.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NBEAL2 23218 genome.wustl.edu 37 3 47040005 47040007 + In_Frame_Del DEL GAA GAA - novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_015175.1 +1 validated p.K1059in_frame_del 1.000:1.000:1.000 - - - - - - - - - NULL ZNF654 55279 genome.wustl.edu 37 3 88189043 88189043 + Nonsense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_018293.2 +1 validated p.Q195* 0.996 126 0% 138 52.9% - - - - - superfamily_C2H2 and C2HC zinc fingers PIK3CA 5290 genome.wustl.edu 37 3 178917478 178917478 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_006218.2 +1 reviewed p.G118D 1.000 259 0% 224 46% - - probably_damaging(0.976) deleterious(0.04) deleterious(0.767) superfamily_SSF54236 MYL5 4636 genome.wustl.edu 37 4 674922 674922 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_002477.1 +1 reviewed p.A138V 0.012 19 0% 22 45.5% - - benign(0.389) tolerated(0.05) deleterious(0.470) superfamily_EF-hand SCARNA22 677770 genome.wustl.edu 37 4 1976379 1976379 + RNA SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NR_003004.1 +1 provisional NULL 0.000 4 0.000 11 0.455 - - - - - - EPHA5 2044 genome.wustl.edu 37 4 66201833 66201833 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_004439.5 -1 reviewed p.A890V 1.000 118 0% 130 50% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like) LPCAT1 79888 genome.wustl.edu 37 5 1494912 1494912 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000475622 -1 known p.R128C 0.997 44 0% 45 55.6% - - - - - NULL TTC37 9652 genome.wustl.edu 37 5 94805538 94805538 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_014639.2 -1 provisional p.P1481L 1.000 125 0% 129 43.4% - - benign(0.04) tolerated(0.54) neutral(0.010) NULL PCDHA12 56137 genome.wustl.edu 37 5 140255345 140255345 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_018903.2 +1 reviewed p.C96 0.070 93 0% 92 51.1% - - - - - HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like RBM27 54439 genome.wustl.edu 37 5 145643143 145643143 + Missense_Mutation SNP T T A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_018989.1 +1 validated p.S760R 0.927 227 0% 201 47.3% - - benign(0.248) tolerated(0.05) neutral(0.370) NULL GPRIN1 114787 genome.wustl.edu 37 5 176026254 176026254 + Missense_Mutation SNP A A T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_052899.2 -1 validated p.D194E 0.000 30 0% 40 52.5% - - benign(0.004) tolerated(1) - NULL PKHD1 5314 genome.wustl.edu 37 6 51618014 51618014 + Nonsense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_138694.3 -1 reviewed p.R2979* 0.000 146 0% 128 40.6% - - - - - NULL MMS22L 253714 genome.wustl.edu 37 6 97634457 97634457 + Missense_Mutation SNP G G T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_198468.2 -1 predicted p.L717M 0.595 79 0% 65 43.1% - - probably_damaging(0.997) deleterious(0.02) deleterious(0.849) NULL EIF3B 8662 genome.wustl.edu 37 7 2412383 2412383 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001037283.1 +1 validated p.S588F 0.974 142 0% 135 47.4% - - possibly_damaging(0.433) tolerated(0.05) deleterious(0.486) HMMPfam_eIF2A,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain ANKIB1 54467 genome.wustl.edu 37 7 91972444 91972444 + Silent SNP C C G novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_019004.1 +1 validated p.A298 1.000 207 0% 155 42.6% - - - - - superfamily_ANK DLC1 10395 genome.wustl.edu 37 8 13357421 13357421 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_182643.2 -1 reviewed p.R54C 0.998 106 0% 107 40.2% - - benign(0.029) deleterious(0.01) neutral(0.407) NULL PXDNL 137902 genome.wustl.edu 37 8 52320933 52320933 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_144651.4 -1 validated p.A1084V 1.000 88 0% 62 35.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases RP1 6101 genome.wustl.edu 37 8 55534730 55534730 + Silent SNP A A G novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_006269.1 +1 reviewed p.G223 1.000 151 0% 158 60.8% - - - - - HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837 CHD7 55636 genome.wustl.edu 37 8 61741241 61741241 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_017780.2 +1 reviewed p.T1133M 1.000 107 0% 139 53.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases NAMPTL 646309 genome.wustl.edu 37 10 36812822 36812822 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000440465 -1 known p.T114M 1.000 350 0% 477 34.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL AGAP6 414189 genome.wustl.edu 37 10 51769799 51769799 + Silent SNP C C T rs80034169 TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001077665.2 +1 validated p.V638 0.994 40 12.5% 60 20% - - - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat WAPAL 23063 genome.wustl.edu 37 10 88277363 88277363 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_015045.2 -1 validated p.A155V 1.000 278 0% 339 30.1% - - benign(0.167) tolerated(0.1) neutral(0.301) NULL PTEN 5728 genome.wustl.edu 37 10 89711925 89711926 + Frame_Shift_Ins INS - - T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000371953 +1 known p.L181fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II TTC40 54777 genome.wustl.edu 37 10 134621939 134621939 + Silent SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000368586 -1 known p.L2712 0.011 19 0% 55 16.4% - - - - - NULL PDHX 8050 genome.wustl.edu 37 11 34938234 34938234 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_003477.2 +1 reviewed p.P11L 0.002 61 0% 62 33.9% - - benign(0.032) tolerated(0.1) neutral(0.288) NULL MTNR1B 4544 genome.wustl.edu 37 11 92715124 92715124 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_005959.3 +1 reviewed p.S245 0.014 51 0% 61 47.5% - - - - - HMMPfam_7tm_1,superfamily_SSF81321 C11orf34 349633 genome.wustl.edu 37 11 112126170 112126170 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001145024.1 -1 provisional p.T109 0.000 226 0% 171 45.6% - - - - - NULL GPR133 283383 genome.wustl.edu 37 12 131466545 131466545 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_198827.3 +1 validated p.G143S 0.999 87 0% 81 46.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_Concanavalin A-like lectins/glucanases PCDH9 5101 genome.wustl.edu 37 13 67802442 67802442 + Missense_Mutation SNP G G T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_203487.2 -1 reviewed p.P44Q 1.000 150 0% 177 54.2% - - possibly_damaging(0.891) tolerated(0.08) deleterious(0.650) HMMPfam_Cadherin_2,superfamily_Cadherin-like TBC1D4 9882 genome.wustl.edu 37 13 75869002 75869002 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_014832.2 -1 validated p.A1102T 1.000 120 0% 117 45.3% - - possibly_damaging(0.609) tolerated(0.23) neutral(0.253) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p RIN3 79890 genome.wustl.edu 37 14 93118516 93118516 + Silent SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_024832.3 +1 validated p.P374 0.014 9 0.000 14 0.500 - - - - - NULL DDX24 57062 genome.wustl.edu 37 14 94526801 94526801 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_020414.3 -1 reviewed p.R519Q 0.996 288 0% 283 14.5% - - possibly_damaging(0.909) tolerated(0.09) deleterious(0.658) HMMSmart_DEXDc,superfamily_SSF52540 WARS 7453 genome.wustl.edu 37 14 100803413 100803413 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_004184.3 -1 reviewed p.E414K 0.998 125 0% 102 47.1% - - possibly_damaging(0.927) tolerated(0.36) neutral(0.395) HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase ALDH1A3 220 genome.wustl.edu 37 15 101440918 101440918 + Missense_Mutation SNP G G T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_000693.2 +1 reviewed p.R341L 0.147 91 0% 91 57.1% - - probably_damaging(0.976) tolerated(0.11) deleterious(0.690) HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH ABCC6 368 genome.wustl.edu 37 16 16315528 16315528 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001171.5 -1 reviewed p.S66F 0.987 93 0% 119 21% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL BCAR1 9564 genome.wustl.edu 37 16 75298392 75298392 + Missense_Mutation SNP C C A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000418647 -1 known p.A3S 0.121 11 0% 13 69.2% - - unknown(0) - - NULL MPP2 4355 genome.wustl.edu 37 17 41959878 41959878 + Missense_Mutation SNP C C A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_005374.3 -1 reviewed p.G152V 1.000 21 0% 20 60% - - possibly_damaging(0.934) deleterious(0) deleterious(0.825) HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like KIF18B 146909 genome.wustl.edu 37 17 43003803 43003803 + Splice_Site SNP C C A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000376982 -1 known e14+1 0.879 138 0% 108 50.9% - - benign(0.026) tolerated(0.11) neutral(0.273) - SCPEP1 59342 genome.wustl.edu 37 17 55079509 55079509 + Silent SNP T T C novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_021626.2 +1 validated p.L421 0.963 150 0% 149 47% - - - - - HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases CLEC4M 10332 genome.wustl.edu 37 19 7831669 7831669 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_014257.4 +1 reviewed p.V304 0.003 80 0% 79 45.6% - - - - - HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like ARHGAP35 2909 genome.wustl.edu 37 19 47423264 47423264 + Frame_Shift_Del DEL T T - novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_004491.4 +1 reviewed p.F445fs 0.960 - - - - - - - - - HMMSmart_SM00441 LRRC4B 94030 genome.wustl.edu 37 19 51021739 51021739 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001080457.1 -1 provisional p.V411M 1.000 33 0% 41 48.8% - - possibly_damaging(0.619) tolerated(0.26) neutral(0.249) HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726 TNNT1 7138 genome.wustl.edu 37 19 55649383 55649383 + Missense_Mutation SNP C C G novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_003283.4 -1 reviewed p.K149N 0.996 230 0% 212 41.5% - - probably_damaging(0.991) deleterious(0) deleterious(0.889) HMMPfam_Troponin ACSS1 84532 genome.wustl.edu 37 20 24988467 24988467 + Silent SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_032501.2 -1 reviewed p.D667 1.000 101 0% 98 58.2% - - - - - superfamily_Acetyl-CoA synthetase-like CDH4 1002 genome.wustl.edu 37 20 60318708 60318708 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_001794.2 +1 reviewed p.A87T 0.995 37 0% 30 23.3% - - benign(0.003) tolerated(0.37) neutral(0.019) HMMPfam_Cadherin_pro,superfamily_Cadherin BCR 613 genome.wustl.edu 37 22 23656202 23656202 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_004327.3 +1 reviewed p.L1169 1.000 67 0% 88 46.6% - - - - - HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP PLXNB2 23654 genome.wustl.edu 37 22 50721777 50721777 + Missense_Mutation SNP A A C novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_012401.2 -1 validated p.F890V 1.000 25 0% 20 35% - - probably_damaging(0.995) deleterious(0.01) deleterious(0.863) HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set ENSG00000211459 0 genome.wustl.edu 37 MT 901 901 + RNA SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000389680 +1 known NULL NULL 155 0% 78 47.4% - - - - - - TAB3 257397 genome.wustl.edu 37 X 30873213 30873213 + Missense_Mutation SNP T T A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_152787.3 -1 reviewed p.Y190F 1.000 233 0% 251 51.8% - - possibly_damaging(0.945) tolerated(0.67) neutral(0.392) NULL NYX 60506 genome.wustl.edu 37 X 41333519 41333519 + Silent SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_022567.2 +1 reviewed p.R271 0.013 5 0.000 14 0.714 - - - - - HMMPfam_LRR_1,superfamily_SSF52058 SMC1A 8243 genome.wustl.edu 37 X 53449449 53449449 + Missense_Mutation SNP T T C novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_006306.2 -1 reviewed p.N34S 1.000 125 0% 129 48.8% - - probably_damaging(0.99) deleterious(0) deleterious(0.886) HMMPfam_SMC_N,superfamily_SSF52540 LOC100288033 100288033 genome.wustl.edu 37 X 70887736 70887736 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a XM_002343818.1 +1 model p.S28N 0.000 47 0% 46 56.5% - - - - - NULL FAM133A 286499 genome.wustl.edu 37 X 92964827 92964827 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_173698.2 +1 validated p.R137C 0.025 62 0% 59 42.4% - - unknown(0) deleterious(0.01) - NULL ALG13 79868 genome.wustl.edu 37 X 110980098 110980098 + Missense_Mutation SNP G G A novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a ENST00000394780 +1 known p.G896S 0.020 196 0% 210 41.4% - - probably_damaging(0.999) tolerated(0.69) deleterious(0.492) NULL AVPR2 554 genome.wustl.edu 37 X 153171162 153171162 + Missense_Mutation SNP C C T novel TCGA-BS-A0WQ-01A-21D-A10G-09 TCGA-BS-A0WQ-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b5b61fc4-cfeb-44d4-99f8-917607143fbd 4579e43f-d418-4dd9-846a-def5ae8f6d6a NM_000054.4 +1 reviewed p.R68W 1.000 17 0% 14 57.1% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like