Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ACAP3 116983 genome.wustl.edu 37 1 1234016 1234016 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_030649.2 -1 validated p.A265V 0.994 23 0% 51 43.1% 21 47.6% probably_damaging(1) tolerated(0.24) deleterious(0.537) superfamily_PH domain-like DNAJC11 55735 genome.wustl.edu 37 1 6741012 6741012 + Nonsense_Mutation SNP G G C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_018198.3 -1 validated p.S53* 0.066 369 0% 571 40.5% 12 50% - - - HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain CSMD2 114784 genome.wustl.edu 37 1 34070890 34070890 + Missense_Mutation SNP T T A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_052896.3 -1 validated p.K2177M 0.997 120 0% 175 46.9% 0 - possibly_damaging(0.691) deleterious(0.02) deleterious(0.631) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain SZT2 23334 genome.wustl.edu 37 1 43896276 43896276 + Silent SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_015284.2 +1 predicted p.S631 0.030 77 0% 127 31.5% 2 50% - - - NULL LPHN2 23266 genome.wustl.edu 37 1 82434881 82434881 + Missense_Mutation SNP A A G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_012302.2 +1 reviewed p.E831G 0.806 396 0% 533 37.1% 12 50% benign(0) tolerated(0.05) neutral(0.345) HMMPfam_7tm_2 CTBS 1486 genome.wustl.edu 37 1 85040033 85040033 + Silent SNP T T C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_004388.2 -1 validated p.L22 0.000 4 0.000 7 0.714 0 - - - - superfamily_(Trans)glycosidases QSOX1 5768 genome.wustl.edu 37 1 180151344 180151344 + Silent SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_002826.4 +1 reviewed p.A214 0.000 128 0.8% 190 39.5% 84 38% - - - NULL USH2A 7399 genome.wustl.edu 37 1 216019377 216019377 + Splice_Site SNP T T C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_206933.2 -1 reviewed e44-2 1.000 157 0% 143 58.7% 0 - - - - - ST3GAL5 8869 genome.wustl.edu 37 2 86088413 86088413 + Missense_Mutation SNP C C G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_003896.3 -1 reviewed p.C70S 0.362 321 0% 460 39.6% 0 - benign(0.184) deleterious(0.01) neutral(0.423) NULL XIRP2 129446 genome.wustl.edu 37 2 168101141 168101141 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_152381.4 +1 validated p.T1080I 0.000 89 0% 73 61.6% 0 - probably_damaging(0.99) tolerated(0.15) deleterious(0.682) NULL ZDBF2 57683 genome.wustl.edu 37 2 207170379 207170379 + Missense_Mutation SNP A A G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_020923.1 +1 validated p.D376G 0.000 274 0% 222 76.6% 0 - benign(0.004) tolerated(0.74) neutral(0.002) NULL ERBB4 2066 genome.wustl.edu 37 2 212295788 212295788 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_005235.2 -1 reviewed p.R842Q 1.000 267 0% 258 62.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like) FN1 2335 genome.wustl.edu 37 2 216239967 216239967 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_212482.1 -1 reviewed p.R2043C 0.985 114 0% 71 81.7% 34 0% probably_damaging(0.979) deleterious(0.03) deleterious(0.786) HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III VHL 7428 genome.wustl.edu 37 3 10191506 10191506 + Missense_Mutation SNP C C T rs5030820 byCluster TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_000551.2 +1 reviewed p.R167W 0.974 174 0% 144 13.2% 31 6.4% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VHL,superfamily_VHL ACOX2 8309 genome.wustl.edu 37 3 58510221 58510221 + Silent SNP T T G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_003500.3 -1 reviewed p.P486 0.991 82 0% 66 80.3% 12 100% - - - NULL PIK3CA 5290 genome.wustl.edu 37 3 178916928 178916933 + In_Frame_Del DEL AGGCAA AGGCAA - novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 AGGCAA AGGCAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_006218.2 +1 reviewed p.GN106in_frame_del 0.996:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236 DCK 1633 genome.wustl.edu 37 4 71895096 71895096 + Missense_Mutation SNP T T G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 ENST00000504952 +1 known p.I294S 0.792 285 0% 353 41.1% 21 38% unknown(0) - - NULL IL6ST 3572 genome.wustl.edu 37 5 55237111 55237111 + Silent SNP A A G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_002184.2 -1 reviewed p.I852 0.997 165 0% 216 38.9% 10 30% - - - NULL PCDHA7 56141 genome.wustl.edu 37 5 140214382 140214382 + Missense_Mutation SNP G G C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_018910.2 +1 reviewed p.R138S 0.000 156 0% 212 39.6% 0 - benign(0.07) tolerated(0.4) neutral(0.021) HMMPfam_Cadherin,superfamily_Cadherin-like DST 667 genome.wustl.edu 37 6 56457147 56457147 + Missense_Mutation SNP G G T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_015548.4 -1 reviewed p.L1623I 1.000 197 0% 253 47% 1 100% probably_damaging(1) - - HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat ENSG00000240720 0 genome.wustl.edu 37 7 91794299 91794299 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 ENST00000430130 -1 known p.R73K 0.000 360 0% 516 45.9% 0 - benign(0) tolerated(0.19) neutral(0.050) NULL KIAA1967 57805 genome.wustl.edu 37 8 22471636 22471637 + Frame_Shift_Ins INS - - G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_021174.4 +1 validated p.Y247fs 1.000:1.000 - - - - - - - - - NULL OPRK1 4986 genome.wustl.edu 37 8 54142329 54142329 + Missense_Mutation SNP A A G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_000912.3 -1 validated p.L224P 0.993 69 0% 92 30.4% 1 100% benign(0.058) tolerated(0.22) neutral(0.046) HMMPfam_7tm_1,superfamily_SSF81321 RAD54B 25788 genome.wustl.edu 37 8 95399326 95399326 + Missense_Mutation SNP A A T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_012415.2 -1 reviewed p.L624Q 0.008 398 0% 623 47% 11 45.4% benign(0.016) tolerated(0.66) neutral(0.003) NULL FAM208B 54906 genome.wustl.edu 37 10 5790369 5790369 + Nonsense_Mutation SNP C C G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_017782.4 +1 validated p.S1662* 0.001 97 0% 113 40.7% 12 41.6% - - - NULL HSPA14 51182 genome.wustl.edu 37 10 14881981 14881981 + Missense_Mutation SNP A A T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_016299.2 +1 validated p.E45D 1.000 241 0% 244 39.3% 15 53.3% probably_damaging(0.96) deleterious(0) deleterious(0.848) HMMPfam_HSP70,superfamily_Actin-like ATPase domain FAM171A1 221061 genome.wustl.edu 37 10 15256485 15256485 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001010924.1 -1 validated p.R368C 0.053 69 0% 94 40.4% 17 52.9% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_UPF0560 VIM 7431 genome.wustl.edu 37 10 17275604 17275604 + Missense_Mutation SNP C C G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_003380.3 +1 reviewed p.L215V 0.813 168 0% 199 39.7% 1172 17.4% probably_damaging(0.986) deleterious(0.03) deleterious(0.799) HMMPfam_Filament PLXDC2 84898 genome.wustl.edu 37 10 20290845 20290845 + Missense_Mutation SNP A A T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_032812.7 +1 provisional p.D85V 1.000 105 0% 146 34.2% 4 0% possibly_damaging(0.68) deleterious(0.02) deleterious(0.625) NULL WDFY4 57705 genome.wustl.edu 37 10 50098640 50098640 + Missense_Mutation SNP C C G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_020945.1 +1 validated p.S2395C 0.998 119 0% 128 40.6% 0 - benign(0.004) deleterious(0.01) neutral(0.406) superfamily_PH domain-like ANXA7 310 genome.wustl.edu 37 10 75156920 75156920 + Splice_Site SNP A A T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_004034.2 -1 reviewed e3+2 0.998 112 0% 120 45% 13 100% - - - - CUTC 51076 genome.wustl.edu 37 10 101515437 101515437 + Missense_Mutation SNP G G T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_015960.2 +1 validated p.V255L 1.000 312 0% 329 28.6% 22 31.8% benign(0.411) tolerated(0.15) neutral(0.374) superfamily_CutC-like (Pfam 03932) CARS 833 genome.wustl.edu 37 11 3062232 3062232 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001014438.1 -1 reviewed p.P24S 0.001 216 0% 363 39.1% 1 100% benign(0) - - NULL MS4A4A 51338 genome.wustl.edu 37 11 60073605 60073605 + Silent SNP G G T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_148975.1 +1 reviewed p.V193 0.033 857 0.1% 1148 45.8% 8 0% - - - HMMPfam_CD20 GRM5 2915 genome.wustl.edu 37 11 88780913 88780913 + Missense_Mutation SNP A A G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001143831.2 -1 reviewed p.V43A 1.000 162 0% 238 41.2% 0 - probably_damaging(0.999) deleterious(0) deleterious(0.935) superfamily_Periplasmic binding protein-like I TECTA 7007 genome.wustl.edu 37 11 121038848 121038848 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_005422.2 +1 reviewed p.T1891M 1.000 370 0% 521 43.4% 0 - benign(0.317) deleterious(0.01) deleterious(0.505) HMMPfam_Zona_pellucida,HMMSmart_SM00241 DNAJC22 79962 genome.wustl.edu 37 12 49745143 49745143 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_024902.2 +1 provisional p.R295Q 0.708 102 0% 127 45.7% 14 28.5% benign(0.001) tolerated(0.14) neutral(0.249) HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N ARHGEF7 8874 genome.wustl.edu 37 13 111940783 111940783 + Silent SNP C C G novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001113511.1 +1 reviewed p.L730 0.782 289 0% 270 67.8% 7 71.4% - - - NULL CNIH 10175 genome.wustl.edu 37 14 54898860 54898860 + Missense_Mutation SNP G G T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_005776.2 -1 validated p.L77I 1.000 139 0% 122 59.8% 16 62.5% probably_damaging(0.998) tolerated(0.25) deleterious(0.511) HMMPfam_Cornichon UACA 55075 genome.wustl.edu 37 15 70960378 70960379 + Frame_Shift_Del DEL TC TC - novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_018003.2 -1 validated p.E882fs 0.983:0.989 - - - - - - - - - NULL MEF2A 4205 genome.wustl.edu 37 15 100230607 100230607 + Missense_Mutation SNP T T C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_005587.2 +1 reviewed p.S280P 1.000 144 0% 109 11.9% 14 7.1% possibly_damaging(0.736) deleterious(0.03) deleterious(0.633) NULL ASPHD1 253982 genome.wustl.edu 37 16 29912801 29912802 + In_Frame_Ins INS - - GGG novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_181718.3 +1 validated p.173in_frame_insG 1.000:1.000 - - - - - - - - - NULL LOC100129191 100129191 genome.wustl.edu 37 16 30846344 30846344 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 XM_001725676.1 -1 model p.G46R 0.000 14 0.000 9 0.889 0 - - - - NULL ZFHX3 463 genome.wustl.edu 37 16 72829430 72829430 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_006885.3 -1 reviewed p.T2384I 1.000 85 0% 81 82.7% 4 100% unknown(0) - - NULL TP53 7157 genome.wustl.edu 37 17 7578190 7578190 + Missense_Mutation SNP T T C rs121912666 TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_000546.4 -1 reviewed p.Y220C 0.998 315 0% 225 73.3% 39 89.7% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_p53-like transcription factors,HMMPfam_P53 KANK2 25959 genome.wustl.edu 37 19 11289254 11289254 + Silent SNP T T C novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001136191.2 -1 validated p.Q464 0.000 54 0% 34 82.4% 10 60% - - - NULL UPF1 5976 genome.wustl.edu 37 19 18967072 18967072 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_002911.3 +1 reviewed p.R596Q 1.000 39 0% 20 65% 20 80% possibly_damaging(0.747) deleterious(0.04) deleterious(0.623) superfamily_SSF52540 ENSG00000171101 0 genome.wustl.edu 37 19 51671605 51671605 + Silent SNP C C A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 ENST00000341811 +1 known p.T202 0.000 83 0% 40 80% 0 - - - - superfamily_SSF48726 CDH22 64405 genome.wustl.edu 37 20 44815501 44815501 + Silent SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_021248.1 -1 reviewed p.Y503 0.976 245 0% 357 48.7% 4 25% - - - HMMPfam_Cadherin,superfamily_Cadherin-like CDH4 1002 genome.wustl.edu 37 20 60503443 60503443 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001794.2 +1 reviewed p.A656V 0.037 14 0.000 9 0.444 1 0% benign(0.015) tolerated(0.53) neutral(0.008) HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin COL9A3 1299 genome.wustl.edu 37 20 61460850 61460850 + Missense_Mutation SNP G G A novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_001853.3 +1 reviewed p.R351Q 0.003 52 0% 56 21.4% 0 - possibly_damaging(0.922) tolerated(0.24) neutral(0.409) NULL MIOX 55586 genome.wustl.edu 37 22 50925841 50925841 + Missense_Mutation SNP C C T novel TCGA-BG-A18C-01A-11D-A12J-09 TCGA-BG-A18C-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ec0e0c54-e55a-4c82-b7e0-dfeb13a33d9f 312ef8aa-c9ea-41b5-b3e3-5588e8c606a4 NM_017584.5 +1 validated p.P15S 0.999 64 0% 48 68.8% 0 - probably_damaging(0.988) tolerated(0.13) deleterious(0.690) NULL