Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain MTOR 2475 genome.wustl.edu 37 1 11187860 11187860 + Missense_Mutation SNP T T C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_004958.3 -1 reviewed p.S2013G 1.000 228 0% 166 42.8% 16 50% possibly_damaging(0.61) deleterious(0) deleterious(0.656) superfamily_ARM-type_fold MACF1 23499 genome.wustl.edu 37 1 39784128 39784128 + Silent SNP A A G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 ENST00000372925 +1 known p.I401V 0.946 106 0% 128 44.5% 1 100% - - - superfamily_Spectrin repeat POGZ 23126 genome.wustl.edu 37 1 151381278 151381278 + Silent SNP T T C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_015100.2 -1 reviewed p.K651 1.000 973 0.1% 1253 59.6% 5 60% - - - PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers FCRL3 115352 genome.wustl.edu 37 1 157667207 157667207 + Missense_Mutation SNP A A C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_052939.3 -1 reviewed p.F189L 0.904 153 0% 178 23% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) superfamily_Immunoglobulin SMG7 9887 genome.wustl.edu 37 1 183514293 183514293 + Missense_Mutation SNP C C G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_173156.2 +1 validated p.P739R 1.000 513 0% 573 28.8% 14 35.7% benign(0.31) tolerated(0.1) neutral(0.383) NULL PCNXL2 80003 genome.wustl.edu 37 1 233231561 233231561 + Missense_Mutation SNP G G T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_014801.3 -1 provisional p.P1296T 1.000 153 0% 177 24.9% 5 60% probably_damaging(1) deleterious(0) deleterious(0.945) NULL RYR2 6262 genome.wustl.edu 37 1 237982468 237982468 + Missense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001035.2 +1 reviewed p.V4856I 1.000 285 0% 327 29.1% 0 - probably_damaging(0.988) - - HMMPfam_Ion_trans TMEM150A 129303 genome.wustl.edu 37 2 85826690 85826690 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001031738.2 -1 validated p.R178* 1.000 38 0% 41 41.5% 19 21% - - - HMMPfam_Frag1 LRP2 4036 genome.wustl.edu 37 2 170038100 170038100 + Missense_Mutation SNP G G A rs140572511 by1000genomes TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_004525.2 -1 reviewed p.R3343C 0.746 86 0% 88 38.6% 0 - probably_damaging(0.994) deleterious(0) deleterious(0.897) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 HIBCH 26275 genome.wustl.edu 37 2 191117002 191117002 + Missense_Mutation SNP G G C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_014362.3 -1 reviewed p.F183L 1.000 258 0% 198 42.9% 41 46.3% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_ECH,superfamily_ClpP/crotonase AQP12B 653437 genome.wustl.edu 37 2 241622183 241622183 + Silent SNP G G T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001102467.1 -1 validated p.A24 0.074 39 0% 38 42.1% 0 - - - - superfamily_MIP CTNNB1 1499 genome.wustl.edu 37 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 byCluster TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001098209.1 +1 reviewed p.S33C 1.000 105 0% 97 51.5% 61 52.4% probably_damaging(1) deleterious(0) deleterious(0.945) NULL ACAD11 84129 genome.wustl.edu 37 3 132337502 132337502 + Missense_Mutation SNP C C G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_032169.4 -1 validated p.D464H 1.000 143 0% 101 46.5% 4 0% possibly_damaging(0.746) deleterious(0) deleterious(0.719) HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like MUC4 4585 genome.wustl.edu 37 3 195492262 195492262 + Silent SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_018406.5 -1 reviewed p.L4431 0.955 33 0% 50 62% 0 - - - - HMMPfam_AMOP,HMMSmart_SM00723 CCDC110 256309 genome.wustl.edu 37 4 186392097 186392097 + Splice_Site SNP A A C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_152775.3 -1 validated e2+2 0.999 30 0% 39 53.8% 0 - - - - - GFRA3 2676 genome.wustl.edu 37 5 137593480 137593480 + Silent SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001496.3 -1 reviewed p.H211 0.000 22 0% 38 47.4% 1 100% - - - HMMPfam_GDNF DSP 1832 genome.wustl.edu 37 6 7570709 7570709 + Silent SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_004415.2 +1 reviewed p.N538 1.000 188 0% 157 43.9% 6 50% - - - superfamily_Spectrin repeat PKHD1 5314 genome.wustl.edu 37 6 51613425 51613425 + Missense_Mutation SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_138694.3 -1 reviewed p.G2997R 0.977 256 0% 185 45.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL GLCCI1 113263 genome.wustl.edu 37 7 8124594 8124594 + Silent SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 ENST00000438949 +1 known p.Q159* 1.000 178 0% 154 45.5% 0 - - - - NULL NOD1 10392 genome.wustl.edu 37 7 30465278 30465278 + Silent SNP A A G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_006092.2 -1 reviewed p.D946 0.011 210 0% 182 35.7% 3 33.3% - - - superfamily_SSF52047 PPIA 5478 genome.wustl.edu 37 7 44840963 44840963 + Missense_Mutation SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_021130.3 +1 reviewed p.S147F 0.991 227 0% 253 37.2% 2294 42.5% benign(0.08) deleterious(0) neutral(0.450) HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like ZNF800 168850 genome.wustl.edu 37 7 127013406 127013406 + Missense_Mutation SNP C C A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 ENST00000265827 -1 known p.A662S 1.000 209 0% 133 44.4% 5 20% benign(0.002) deleterious(0.05) neutral(0.345) NULL DCAF4L2 138009 genome.wustl.edu 37 8 88885892 88885892 + Missense_Mutation SNP G G T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_152418.3 -1 validated p.T103N 0.849 177 0% 130 43.8% 0 - benign(0) tolerated(0.85) neutral(0.001) superfamily_WD40_like RUNX1T1 862 genome.wustl.edu 37 8 92983023 92983023 + Missense_Mutation SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_175634.1 -1 reviewed p.V468M 1.000 60 0% 47 36.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL FAM135B 51059 genome.wustl.edu 37 8 139144970 139144970 + Nonsense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_015912.3 -1 validated p.R1363* 0.997 243 0.4% 209 45.9% 0 - - - - NULL PCDH15 65217 genome.wustl.edu 37 10 55587185 55587185 + Silent SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001142763.1 -1 reviewed p.A1450 0.004 55 0% 46 58.7% 0 - - - - NULL CCNJ 54619 genome.wustl.edu 37 10 97817990 97817990 + Missense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001134375.1 +1 validated p.E382K 1.000 111 0% 92 42.4% 0 - benign(0.235) deleterious(0.02) neutral(0.407) NULL DPYSL4 10570 genome.wustl.edu 37 10 134018370 134018370 + Missense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_006426.2 +1 validated p.R552Q 0.775 56 0% 58 39.7% 0 - probably_damaging(0.998) tolerated(0.11) deleterious(0.746) NULL KCNA4 3739 genome.wustl.edu 37 11 30032890 30032890 + Missense_Mutation SNP T T C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_002233.2 -1 reviewed p.I446V 1.000 208 0% 208 42.8% 0 - benign(0.006) tolerated(0.23) neutral(0.042) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels AHNAK 79026 genome.wustl.edu 37 11 62285396 62285396 + Frame_Shift_Del DEL T T - novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001620.1 -1 validated p.K5498fs 0.275 - - - - - - - - - NULL PKNOX2 63876 genome.wustl.edu 37 11 125301144 125301144 + Silent SNP C C T rs146936477 by1000genomes TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_022062.2 +1 validated p.H425 0.866 70 0% 46 43.5% 0 - - - - NULL ZMYM2 7750 genome.wustl.edu 37 13 20635305 20635305 + Frame_Shift_Del DEL T T - novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_003453.2 +1 validated p.T952fs 0.988 - - - - - - - - - NULL XPO4 64328 genome.wustl.edu 37 13 21370373 21370373 + Missense_Mutation SNP T T C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_022459.4 -1 validated p.E880G 1.000 169 0% 92 43.5% 2 50% possibly_damaging(0.895) deleterious(0.01) deleterious(0.758) superfamily_ARM-type_fold AKAP11 11215 genome.wustl.edu 37 13 42882647 42882647 + Missense_Mutation SNP C C A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_016248.2 +1 reviewed p.N1725K 0.997 299 0% 225 36.9% 4 50% benign(0.15) tolerated(0.1) neutral(0.299) NULL THSD1 55901 genome.wustl.edu 37 13 52971723 52971723 + Missense_Mutation SNP A A C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_018676.3 -1 reviewed p.L222R 0.002 117 0% 93 41.9% 0 - possibly_damaging(0.9) deleterious(0.02) deleterious(0.740) NULL CPNE6 9362 genome.wustl.edu 37 14 24546420 24546420 + Missense_Mutation SNP C C G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_006032.2 +1 reviewed p.R453G 1.000 46 0% 47 46.8% 0 - probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMSmart_SM00327,HMMPfam_Copine,superfamily_vWA-like YY1 7528 genome.wustl.edu 37 14 100705788 100705790 + In_Frame_Del DEL CCA CCA - novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 CCA CCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_003403.3 +1 reviewed p.H73in_frame_del 0.016:0.090:0.106 - - - - - - - - - NULL ATP10A 57194 genome.wustl.edu 37 15 25981206 25981206 + Missense_Mutation SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_024490.3 -1 reviewed p.C246Y 0.863 50 0% 43 62.8% 0 - benign(0) tolerated(1) - HMMPfam_E1-E2_ATPase,superfamily_SSF81653 ENSG00000221444 0 genome.wustl.edu 37 15 32685603 32685603 + RNA SNP C C A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 ENST00000408517 -1 novel NULL 0.011 41 0% 44 75% 0 - - - - - CTCF 10664 genome.wustl.edu 37 16 67670650 67670650 + Frame_Shift_Del DEL T T - novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_006565.2 +1 reviewed p.I632fs 1.000 - - - - - - - - - NULL PRPF8 10594 genome.wustl.edu 37 17 1559855 1559855 + Missense_Mutation SNP T T C novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_006445.3 -1 reviewed p.H1875R 1.000 117 0% 90 41.1% 73 52% possibly_damaging(0.459) tolerated(0.06) deleterious(0.473) NULL C17orf28 283987 genome.wustl.edu 37 17 72959866 72959866 + Missense_Mutation SNP C C A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_030630.2 -1 validated p.W119L 1.000 16 0% 16 81.2% 30 66.6% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) HMMPfam_Hid1 ZNF236 7776 genome.wustl.edu 37 18 74622083 74622083 + Missense_Mutation SNP A A G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_007345.3 +1 validated p.S869G 0.007 182 0% 173 41.6% 3 66.6% benign(0) tolerated(0.47) neutral(0.011) NULL TNPO2 30000 genome.wustl.edu 37 19 12822156 12822156 + Silent SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001136196.1 -1 validated p.D357 0.004 114 0% 107 53.3% 12 41.6% - - - superfamily_ARM repeat CHD6 84181 genome.wustl.edu 37 20 40054000 40054000 + Missense_Mutation SNP C C A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_032221.3 -1 reviewed p.W1388C 1.000 55 0% 57 52.6% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SLC12A5 57468 genome.wustl.edu 37 20 44663626 44663626 + Missense_Mutation SNP G G A novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_001134771.1 +1 reviewed p.S54N 1.000 151 0% 133 49.6% 0 - benign(0.002) tolerated(1) - NULL SYCP2 10388 genome.wustl.edu 37 20 58486897 58486897 + Missense_Mutation SNP G G T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_014258.2 -1 reviewed p.Q294K 0.996 65 0% 43 34.9% 0 - benign(0.013) tolerated(0.19) neutral(0.050) NULL LOC100288372 100288372 genome.wustl.edu 37 21 45123419 45123420 + Frame_Shift_Ins INS - - CCCTGGAAGGGCC rs112876103 byCluster;by1000genomes TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 XM_002343755.1 -1 model p.A6fs 0.002:0.001 - - - - - - - - - NULL FAM9A 171482 genome.wustl.edu 37 X 8764376 8764376 + Missense_Mutation SNP C C G novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_174951.3 -1 validated p.D141H 0.003 52 0% 50 36% 0 - probably_damaging(0.995) tolerated(0.07) deleterious(0.776) NULL FRMPD4 9758 genome.wustl.edu 37 X 12632965 12632965 + Silent SNP C C T novel TCGA-BG-A0MO-01A-11W-A062-09 TCGA-BG-A0MO-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6d8a9eae-d077-46e3-8366-ac49def0612e e00ec749-1b28-4325-90d0-029757ab0106 NM_014728.3 +1 reviewed p.S129 0.929 228 0% 186 55.9% 0 - - - - HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ