Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain CLSTN1 22883 genome.wustl.edu 37 1 9794181 9794181 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001009566.1 -1 validated p.S710 0.018 68 0% 64 84.4% 115 88.6% - - - NULL HIST2H2AB 317772 genome.wustl.edu 37 1 149859103 149859104 + Frame_Shift_Del DEL CC CC - novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 CC CC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_175065.2 -1 reviewed p.H124fs 1.000:1.000 - - - - - - - - - superfamily_Histone-fold SIPA1L2 57568 genome.wustl.edu 37 1 232574913 232574913 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_020808.3 -1 validated p.S1324 0.000 51 0% 32 50% 37 37.8% - - - NULL OR2T35 403244 genome.wustl.edu 37 1 248802147 248802147 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001001827.1 -1 provisional p.R138H 0.000 206 0% 195 26.2% 0 - benign(0.006) tolerated(0.39) neutral(0.016) HMMPfam_7tm_1,superfamily_SSF81321 USP34 9736 genome.wustl.edu 37 2 61544830 61544830 + Missense_Mutation SNP G G C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_014709.3 -1 validated p.R1081G 1.000 105 0% 89 43.8% 2 0% possibly_damaging(0.839) - - NULL IGKV1D-8 28904 genome.wustl.edu 37 2 90260166 90260166 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000471857 +1 known p.G90E 1.000 453 0% 294 40.1% 0 - possibly_damaging(0.903) deleterious(0.02) deleterious(0.741) HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin FAM168B 130074 genome.wustl.edu 37 2 131812927 131812927 + Silent SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001009993.2 -1 validated p.V131 1.000 57 0% 47 34% 35 40% - - - NULL TTN 7273 genome.wustl.edu 37 2 179599284 179599284 + Silent SNP T T C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000356127 -1 known p.G3845 1.000 246 0% 216 44.4% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set CWC22 57703 genome.wustl.edu 37 2 180810034 180810034 + Missense_Mutation SNP T T A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_020943.2 -1 validated p.D850V 0.984 292 0% 263 45.2% 4 50% benign(0.255) deleterious(0.04) neutral(0.376) NULL SCN5A 6331 genome.wustl.edu 37 3 38592796 38592796 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001099404.1 -1 reviewed p.D1689 0.216 330 0% 252 39.3% 0 - - - - HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels CTNNB1 1499 genome.wustl.edu 37 3 41266112 41266112 + Missense_Mutation SNP T T C rs121913228 byCluster TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001098209.1 +1 reviewed p.S37P 1.000 89 0% 91 41.8% 138 40.5% probably_damaging(1) deleterious(0) deleterious(0.945) NULL CADPS 8618 genome.wustl.edu 37 3 62739267 62739267 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003716.3 -1 reviewed p.R246H 1.000 102 0% 88 30.7% 0 - probably_damaging(0.97) deleterious(0) deleterious(0.857) NULL ABCF3 55324 genome.wustl.edu 37 3 183910956 183910956 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_018358.2 +1 validated p.R606H 0.999 91 0% 89 27% 37 62.1% probably_damaging(0.997) deleterious(0) deleterious(0.911) HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA0922 23240 genome.wustl.edu 37 4 154525163 154525163 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_015196.3 +1 validated p.T999M 0.005 178 0% 140 37.1% 1 100% possibly_damaging(0.854) tolerated(0.07) deleterious(0.648) NULL NEK1 4750 genome.wustl.edu 37 4 170327814 170327814 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_012224.1 -1 validated p.D1075N 0.992 86 0% 63 34.9% 1 0% benign(0.124) tolerated(0.16) neutral(0.069) NULL DNAH5 1767 genome.wustl.edu 37 5 13692124 13692124 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001369.2 -1 reviewed p.R4615H 1.000 192 0% 142 45.8% 2 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Dynein_heavy LOC402198 402198 genome.wustl.edu 37 5 14960975 14960975 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 XM_001716525.1 +1 model p.G276R 1.000 53 0% 46 34.8% 0 - - - - HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like PIK3R1 5295 genome.wustl.edu 37 5 67591130 67591135 + In_Frame_Del DEL AAGACG AAGACG - novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 AAGACG AAGACG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_181523.1 +1 reviewed p.KT575in_frame_del 1.000:1.000:1.000:1.000:0.999:0.016 - - - - - - - - - NULL AGGF1 55109 genome.wustl.edu 37 5 76349792 76349792 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_018046.3 +1 validated p.P490 0.077 127 0% 104 26% 12 25% - - - HMMPfam_FHA,superfamily_SMAD/FHA domain KIAA0319 9856 genome.wustl.edu 37 6 24582513 24582513 + Missense_Mutation SNP T T C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_014809.3 -1 reviewed p.I385M 0.996 515 0% 398 40.5% 0 - benign(0.003) tolerated(0.71) neutral(0.002) HMMSmart_SM00089,HMMSmart_SM00060 DNAH8 1769 genome.wustl.edu 37 6 38825468 38825468 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001371.2 +1 validated p.E1753K 1.000 165 0% 142 45.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL GPR116 221395 genome.wustl.edu 37 6 46826785 46826785 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001098518.1 -1 validated p.T952M 0.100 228 0% 157 46.5% 2 0% possibly_damaging(0.912) deleterious(0) deleterious(0.808) HMMPfam_GPS,HMMSmart_SM00303 CTGF 1490 genome.wustl.edu 37 6 132271289 132271289 + Missense_Mutation SNP C C G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001901.2 -1 reviewed p.E185Q 1.000 142 0% 77 41.6% 19 10.5% probably_damaging(0.999) tolerated(0.16) deleterious(0.550) NULL HIVEP2 3097 genome.wustl.edu 37 6 143090873 143090873 + Missense_Mutation SNP G G C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006734.3 -1 provisional p.S1668W 1.000 76 0% 59 45.8% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) NULL STX11 8676 genome.wustl.edu 37 6 144508555 144508555 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003764.3 +1 reviewed p.R264Q 0.998 31 0% 22 40.9% 1 0% possibly_damaging(0.902) tolerated(0.19) neutral(0.406) HMMPfam_SNARE,HMMSmart_t_SNARE MLL5 55904 genome.wustl.edu 37 7 104747057 104747057 + Nonsense_Mutation SNP T T A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_018682.3 +1 reviewed p.Y895* 1.000 262 0% 181 35.4% 6 50% - - - NULL UBR5 51366 genome.wustl.edu 37 8 103373850 103373850 + Missense_Mutation SNP G G C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_015902.4 -1 reviewed p.R23G 1.000 130 0% 84 44% 1 0% possibly_damaging(0.717) deleterious(0.01) deleterious(0.665) NULL SCRIB 23513 genome.wustl.edu 37 8 144895096 144895096 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_182706.3 -1 validated p.D226 0.970 6 0.000 6 0.667 22 40.9% - - - HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like RUSC2 9853 genome.wustl.edu 37 9 35559266 35559266 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001135999.1 +1 validated p.E1129K 1.000 139 0% 97 44.3% 5 40% benign(0.15) tolerated(0.07) neutral(0.332) HMMPfam_RUN,HMMSmart_SM00593 TLN1 7094 genome.wustl.edu 37 9 35700289 35700289 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006289.3 -1 reviewed p.A2187T 1.000 53 0% 46 47.8% 67 43.2% benign(0.064) tolerated(0.1) neutral(0.290) NULL ASB6 140459 genome.wustl.edu 37 9 132401494 132401494 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_017873.2 -1 reviewed p.A166 0.004 54 0% 47 27.7% 8 37.5% - - - HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat FCN1 2219 genome.wustl.edu 37 9 137801649 137801649 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_002003.3 -1 reviewed p.A326T 0.113 38 0% 47 44.7% 1 0% benign(0.001) deleterious(0.02) neutral(0.383) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like NEBL 10529 genome.wustl.edu 37 10 21076206 21076206 + Missense_Mutation SNP G G C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006393.2 -1 reviewed p.S931R 1.000 27 0% 23 39.1% 2 100% possibly_damaging(0.903) tolerated(0.18) neutral(0.414) superfamily_SH3-domain SUPV3L1 6832 genome.wustl.edu 37 10 70946299 70946299 + Silent SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003171.3 +1 provisional p.F150 1.000 186 0% 153 36.6% 7 57.1% - - - superfamily_SSF52540 PTEN 5728 genome.wustl.edu 37 10 89690805 89690805 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000371953 +1 known p.C71Y 1.000 106 0% 78 38.5% 12 58.3% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89692904 89692904 + Missense_Mutation SNP C C G rs121909224 byCluster TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000371953 +1 known p.R130G 1.000 323 0% 294 39.5% 14 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II MUC5B 727897 genome.wustl.edu 37 11 1263750 1263750 + Silent SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_002458.1 +1 validated p.D1883 0.000 124 0% 100 46% 32 53.1% - - - NULL IPO7 10527 genome.wustl.edu 37 11 9457843 9457843 + Missense_Mutation SNP A A C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006391.2 +1 reviewed p.D733A 1.000 60 0% 47 36.2% 75 49.3% probably_damaging(0.994) deleterious(0.01) deleterious(0.858) superfamily_ARM-type_fold AMPD3 272 genome.wustl.edu 37 11 10517180 10517180 + Missense_Mutation SNP G G T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_000480.2 +1 reviewed p.G453C 1.000 81 0% 77 32.5% 12 25% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_A_deaminase,superfamily_SSF51556 LRP4 4038 genome.wustl.edu 37 11 46917500 46917500 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_002334.3 -1 reviewed p.R373Q 1.000 73 0% 75 45.3% 26 57.6% probably_damaging(0.98) tolerated(0.45) neutral(0.436) HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin SLC22A11 55867 genome.wustl.edu 37 11 64335126 64335126 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_018484.2 +1 reviewed p.R372C 0.031 44 0% 40 45% 1 0% possibly_damaging(0.943) tolerated(0.15) deleterious(0.629) HMMPfam_MFS_1,superfamily_MFS general substrate transporter ZNHIT2 741 genome.wustl.edu 37 11 64884406 64884406 + Missense_Mutation SNP G G C novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_014205.2 -1 validated p.F240L 0.953 11 0% 12 41.7% 27 48.1% possibly_damaging(0.702) tolerated(0.4) neutral(0.269) NULL CHD4 1108 genome.wustl.edu 37 12 6700679 6700679 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001273.2 -1 reviewed p.G1098D 1.000 346 0% 311 49.8% 61 40.9% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases IFLTD1 160492 genome.wustl.edu 37 12 25702406 25702406 + Missense_Mutation SNP A A G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001145728.1 -1 validated p.L55P 0.000 183 0% 194 41.2% 0 - benign(0.001) deleterious(0) neutral(0.445) NULL TROAP 10024 genome.wustl.edu 37 12 49717771 49717771 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_005480.3 +1 validated p.R96 0.502 188 0% 163 42.9% 4 75% - - - NULL SPATS2 65244 genome.wustl.edu 37 12 49890718 49890718 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_023071.3 +1 validated p.S210L 0.991 242 0% 230 42.6% 13 53.8% probably_damaging(0.999) deleterious(0.02) deleterious(0.873) HMMPfam_DUF1387 PRPF40B 25766 genome.wustl.edu 37 12 50031303 50031303 + Missense_Mutation SNP C C G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000395012 +1 known p.P11R 1.000 59 0% 50 36% 22 77.2% - - - NULL PPP1CC 5501 genome.wustl.edu 37 12 111157944 111157944 + Missense_Mutation SNP C C G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000340766 -1 known p.E337Q 1.000 26 0% 11 45.5% 58 46.5% unknown(0) deleterious(0) - NULL PAPLN 89932 genome.wustl.edu 37 14 73731002 73731002 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_173462.3 +1 validated p.R955Q 0.884 36 0% 40 40% 2 100% possibly_damaging(0.868) deleterious(0.02) deleterious(0.720) HMMSmart_IGc2,superfamily_SSF48726 FBLN5 10516 genome.wustl.edu 37 14 92361408 92361408 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006329.3 -1 reviewed p.E130K 1.000 73 0% 72 36.1% 2 0% probably_damaging(0.959) deleterious(0) deleterious(0.847) HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin ENSG00000247530 0 genome.wustl.edu 37 15 63880395 63880395 + RNA SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000499437 -1 known NULL 0.002 51 0% 31 48.4% 0 - - - - - EXOC3L1 283849 genome.wustl.edu 37 16 67221448 67221448 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_178516.3 -1 validated p.V240 0.002 22 0.000 9 0.444 0 - - - - HMMPfam_Sec6 LRRC36 55282 genome.wustl.edu 37 16 67375966 67375966 + Missense_Mutation SNP G G T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_018296.5 +1 validated p.R59S 1.000 48 0% 48 41.7% 0 - probably_damaging(0.991) tolerated(0.09) deleterious(0.740) HMMPfam_LRR_1,superfamily_L domain-like TNK1 8711 genome.wustl.edu 37 17 7290405 7290405 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003985.3 +1 validated p.L443 0.000 22 0% 17 29.4% 7 28.5% - - - NULL POLDIP2 26073 genome.wustl.edu 37 17 26684390 26684391 + Frame_Shift_Ins INS - - C rs11448856 byCluster;by1000genomes TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_015584.3 -1 reviewed p.P27fs 0.174:0.160 - - - - - - - - - NULL COASY 80347 genome.wustl.edu 37 17 40716143 40716143 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001042532.2 +1 validated p.E318K 1.000 38 0% 33 30.3% 27 40.7% benign(0.047) tolerated(0.14) neutral(0.253) HMMPfam_CTP_transf_2,superfamily_SSF52374 OTOP3 347741 genome.wustl.edu 37 17 72943293 72943293 + Missense_Mutation SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_178233.1 +1 provisional p.R448H 0.998 31 0% 26 26.9% 0 - benign(0.002) tolerated(0.32) neutral(0.024) NULL TIMP2 7077 genome.wustl.edu 37 17 76851761 76851761 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003255.4 -1 reviewed p.I217 0.980 50 0% 59 50.8% 38 7.8% - - - NULL CDH19 28513 genome.wustl.edu 37 18 64172428 64172428 + Missense_Mutation SNP C C A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_021153.2 -1 reviewed p.G647V 1.000 350 0% 323 35.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Cadherin_C SOCS6 9306 genome.wustl.edu 37 18 67993400 67993400 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_004232.3 +1 reviewed p.S499L 1.000 178 0% 122 39.3% 4 25% probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_SOCS_box,HMMSmart_SOCS CD209 30835 genome.wustl.edu 37 19 7810689 7810689 + Missense_Mutation SNP C C G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_021155.3 -1 reviewed p.A155P 0.001 710 0% 674 38.7% 0 - probably_damaging(0.999) deleterious(0.02) deleterious(0.873) NULL ILVBL 10994 genome.wustl.edu 37 19 15234361 15234361 + Silent SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_006844.3 -1 reviewed p.G54 0.470 95 0% 103 44.7% 22 36.3% - - - HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding) ZSWIM3 140831 genome.wustl.edu 37 20 44506762 44506762 + Missense_Mutation SNP A A G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_080752.2 +1 validated p.H522R 1.000 97 0% 78 34.6% 9 22.2% possibly_damaging(0.459) deleterious(0.05) deleterious(0.496) NULL RASD2 23551 genome.wustl.edu 37 22 35943099 35943099 + Silent SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_014310.3 +1 reviewed p.P81 0.032 74 0% 58 39.7% 1 0% - - - HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540 ZFX 7543 genome.wustl.edu 37 X 24197520 24197520 + Missense_Mutation SNP T T G novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_003410.3 +1 reviewed p.I93M 1.000 473 0% 397 41.3% 7 57.1% probably_damaging(0.99) tolerated(0.1) deleterious(0.728) HMMPfam_Zfx_Zfy_act EFNB1 1947 genome.wustl.edu 37 X 68060232 68060232 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_004429.4 +1 reviewed p.T259M 0.980 37 0% 30 36.7% 46 89.1% benign(0.253) deleterious(0.02) neutral(0.409) NULL NKAP 79576 genome.wustl.edu 37 X 119059334 119059334 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_024528.3 -1 reviewed p.R366Q 1.000 222 0% 200 43.5% 11 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DUF926 MIR505 574508 genome.wustl.edu 37 X 139006384 139006384 + RNA SNP G G T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 ENST00000384901 -1 known NULL 0.996 494 0% 382 42.1% 0 - - - - - FLNA 2316 genome.wustl.edu 37 X 153596052 153596052 + Missense_Mutation SNP C C T novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_001110556.1 -1 reviewed p.R226Q 0.411 23 0% 25 40% 35 0% probably_damaging(0.98) tolerated(0.23) neutral(0.465) HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain BRCC3 79184 genome.wustl.edu 37 X 154317627 154317627 + Splice_Site SNP G G A novel TCGA-BG-A0MI-01A-11W-A062-09 TCGA-BG-A0MI-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ce13cd1-ae72-4a66-af2b-7f0ed412ba94 14513547-8fbc-4290-9f58-c01d21874579 NM_024332.2 +1 reviewed e6+1 1.000 21 0% 13 38.5% 0 - - - - -