Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain PIAS3 10401 genome.wustl.edu 37 1 145581235 145581235 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_006099.3 +1 reviewed p.R322W 1.000 132 0% 121 46.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF57850 FAM5B 57795 genome.wustl.edu 37 1 177250522 177250522 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_021165.2 +1 provisional p.R737Q 0.995 305 0% 229 48.5% - - possibly_damaging(0.563) tolerated(0.53) neutral(0.200) NULL EPCAM 4072 genome.wustl.edu 37 2 47601115 47601115 + Missense_Mutation SNP G G T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_002354.2 +1 reviewed p.C118F 1.000 90 0% 119 46.2% - - probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1 COL6A3 1293 genome.wustl.edu 37 2 238289881 238289881 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_004369.3 -1 reviewed p.T525M 1.000 336 0% 310 45.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like TRANK1 9881 genome.wustl.edu 37 3 36897927 36897927 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_014831.2 -1 provisional p.V502I 0.001 156 0% 158 43.7% - - benign(0) tolerated(0.7) neutral(0.002) superfamily_P-loop containing nucleoside triphosphate hydrolases CTNNB1 1499 genome.wustl.edu 37 3 41266113 41266113 + Missense_Mutation SNP C C G rs121913403 byCluster TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_001098209.1 +1 reviewed p.S37C 1.000 93 0% 84 42.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL LOC340096 340096 genome.wustl.edu 37 5 17491490 17491490 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 XM_293943.4 -1 model p.R130C 1.000 9 0.000 9 0.667 - - - - - HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold PCDHA8 56140 genome.wustl.edu 37 5 140223137 140223137 + Missense_Mutation SNP C C A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_018911.2 +1 reviewed p.A744E 0.021 44 0% 56 33.9% - - benign(0.017) tolerated(0.63) neutral(0.004) NULL ZNF804B 219578 genome.wustl.edu 37 7 88963754 88963754 + Silent SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_181646.2 +1 provisional p.R486 0.809 312 0% 214 38.8% - - - - - NULL HEPACAM2 253012 genome.wustl.edu 37 7 92821666 92821666 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_001039372.1 -1 provisional p.R429K 0.004 331 0% 264 45.8% - - benign(0) - - NULL CPA5 93979 genome.wustl.edu 37 7 129986088 129986088 + Splice_Site DEL G G - rs139621108 byCluster;by1000genomes TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_001127441.1 +1 validated e0+2 0.002 - - - - - - - - - - HTR5A 3361 genome.wustl.edu 37 7 154862798 154862798 + Silent SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_024012.2 +1 reviewed p.A63 0.858 54 0% 42 45.2% - - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ZFHX4 79776 genome.wustl.edu 37 8 77763240 77763240 + Missense_Mutation SNP T T G novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_024721.4 +1 validated p.N1316K 0.997 308 0% 244 44.7% - - benign(0.039) - - NULL FAM135B 51059 genome.wustl.edu 37 8 139165127 139165127 + Missense_Mutation SNP C C A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_015912.3 -1 validated p.V531L 0.000 303 0% 248 50.4% - - benign(0) tolerated(1) - NULL ZCCHC7 84186 genome.wustl.edu 37 9 37304276 37304276 + Missense_Mutation SNP G G T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_032226.2 +1 validated p.R249L 1.000 291 0% 309 42.1% - - benign(0.345) tolerated(0.45) neutral(0.121) HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains GRIN3A 116443 genome.wustl.edu 37 9 104449399 104449399 + Missense_Mutation SNP G G C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_133445.2 -1 reviewed p.N261K 1.000 348 0% 317 46.7% - - benign(0.235) tolerated(0.49) neutral(0.034) superfamily_SSF53822 ASTN2 23245 genome.wustl.edu 37 9 119976979 119976979 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_198187.3 -1 reviewed p.V225M 0.998 75 0% 51 51% - - benign(0.092) tolerated(1) neutral(0.007) NULL DMBT1 1755 genome.wustl.edu 37 10 124377771 124377771 + Missense_Mutation SNP C C G novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_007329.2 +1 reviewed p.H1581Q 0.000 320 0% 274 44.2% - - benign(0.003) tolerated(0.6) neutral(0.004) HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like SLC22A12 116085 genome.wustl.edu 37 11 64366315 64366315 + Frame_Shift_Del DEL G G - novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_144585.2 +1 reviewed p.G331fs 0.000 - - - - - - - - - HMMPfam_MFS_1,superfamily_MFS general substrate transporter IL10RA 3587 genome.wustl.edu 37 11 117870447 117870447 + RNA SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NR_026691.1 +1 reviewed NULL 0.000 32 0% 26 38.5% - - - - - - CYSLTR2 57105 genome.wustl.edu 37 13 49281423 49281423 + Missense_Mutation SNP T T C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_020377.2 +1 reviewed p.I157T 0.130 237 0% 234 47.9% - - benign(0.036) tolerated(0.24) neutral(0.040) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like PPP1R13B 23368 genome.wustl.edu 37 14 104206650 104206650 + Silent SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_015316.2 -1 reviewed p.A701 0.474 41 0% 19 68.4% - - - - - NULL APBA2 321 genome.wustl.edu 37 15 29346728 29346728 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_005503.3 +1 reviewed p.R214H 0.514 39 0% 51 47.1% - - possibly_damaging(0.944) deleterious(0) deleterious(0.833) NULL FAM86A 196483 genome.wustl.edu 37 16 5145473 5145473 + Silent SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_201400.2 -1 validated p.L47 1.000 111 0% 120 38.3% - - - - - NULL SMG1 23049 genome.wustl.edu 37 16 18845705 18845705 + Missense_Mutation SNP G G C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_015092.4 -1 reviewed p.L2796V 1.000 110 0% 84 40.5% - - possibly_damaging(0.945) deleterious(0.02) deleterious(0.772) NULL ANKS4B 257629 genome.wustl.edu 37 16 21261222 21261222 + Missense_Mutation SNP A A C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_145865.2 +1 validated p.E112A 1.000 186 0% 151 49% - - probably_damaging(0.998) deleterious(0.02) deleterious(0.857) HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat DDX19A 55308 genome.wustl.edu 37 16 70400725 70400725 + Silent SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_018332.3 +1 provisional p.Y327 0.964 142 0% 144 43.8% - - - - - superfamily_P-loop containing nucleoside triphosphate hydrolases KIAA0664 23277 genome.wustl.edu 37 17 2603973 2603973 + Missense_Mutation SNP T T C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_015229.3 -1 validated p.Q353R 1.000 8 0.000 7 0.857 - - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL LOC732391 732391 genome.wustl.edu 37 17 15469412 15469412 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 XM_001722159.1 -1 model p.R56H 0.000 178 0% 181 23.8% - - benign(0) tolerated(0.93) - NULL KRT38 8687 genome.wustl.edu 37 17 39594457 39594457 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_006771.3 -1 reviewed p.R377W 1.000 156 0% 136 50% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament LRRC37A2 474170 genome.wustl.edu 37 17 44590098 44590098 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_001006607.2 +1 validated p.P7L 0.002 222 0% 233 15.5% - - benign(0.15) tolerated(0.71) neutral(0.014) NULL APPBP2 10513 genome.wustl.edu 37 17 58525129 58525129 + Missense_Mutation SNP T T A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_006380.2 -1 reviewed p.Y524F 1.000 230 0% 228 46.9% - - possibly_damaging(0.794) tolerated(0.12) deleterious(0.558) superfamily_TPR-like ZIK1 284307 genome.wustl.edu 37 19 58099931 58099931 + Missense_Mutation SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_001010879.2 +1 provisional p.A33T 0.985 309 0% 317 45.7% - - benign(0.372) tolerated(0.13) neutral(0.371) HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) ZNF8 7554 genome.wustl.edu 37 19 58806131 58806131 + Silent SNP G G A novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_021089.2 +1 validated p.G319 0.608 108 0% 138 45.7% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 EFCAB6 64800 genome.wustl.edu 37 22 44068126 44068126 + Silent SNP T T C novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_022785.2 -1 validated p.S493 0.142 222 0% 161 40.4% - - - - - superfamily_EF-hand MED12 9968 genome.wustl.edu 37 X 70343020 70343020 + Missense_Mutation SNP C C T novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_005120.2 +1 reviewed p.R521C 1.000 357 0% 455 47.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL ODZ1 10178 genome.wustl.edu 37 X 123554373 123554373 + Silent SNP A A G novel TCGA-BG-A0LW-01A-11W-A062-09 TCGA-BG-A0LW-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 6bbf7de0-70e4-474c-b9f6-10901edc1834 d467945d-49c8-49c5-9c12-4c8b60232943 NM_014253.3 -1 reviewed p.N1583 0.804 80 0% 84 44% - - - - - HMMPfam_RHS_repeat,superfamily_N2O_reductase_N