Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain EIF4G3 8672 genome.wustl.edu 37 1 21191728 21191728 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_003760.3 -1 validated p.G828S 1.000 478 0% 51 60.8% 23 73.9% probably_damaging(0.996) tolerated(0.19) deleterious(0.511) HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat ZC3H12A 80149 genome.wustl.edu 37 1 37947347 37947347 + Missense_Mutation SNP C C G novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_025079.2 +1 validated p.N243K 0.957 417 0% 637 42.7% 13 53.8% probably_damaging(1) deleterious(0) deleterious(0.945) NULL PLK3 1263 genome.wustl.edu 37 1 45270453 45270453 + Splice_Site SNP T T C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_004073.2 +1 validated e13+2 0.998 131 0% 268 39.2% 4 50% - - - - AGT 183 genome.wustl.edu 37 1 230846279 230846279 + Silent SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_000029.3 -1 reviewed p.V106 0.058 243 0% 309 41.1% 4 0% - - - HMMPfam_Serpin,superfamily_Serpins UGP2 7360 genome.wustl.edu 37 2 64114749 64114807 + Splice_Site DEL TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA - novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006759.3 +1 reviewed e9-1 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - - DNAJB2 3300 genome.wustl.edu 37 2 220145359 220145359 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006736.5 +1 validated p.A42V 1.000 226 0% 312 29.2% 55 41.8% possibly_damaging(0.946) deleterious(0) deleterious(0.835) HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain SLC4A7 9497 genome.wustl.edu 37 3 27427431 27427432 + Frame_Shift_Ins INS - - TTCTCTTTTCCTTTCTGTCTTGATCTTAATCTTTCTTTTTCTTTTTGTCATCTTCTTTCTTTTTCTTACTTTCT novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_003615.3 -1 validated p.K1143fs 1.000:1.000 - - - - - - - - - NULL HTR1F 3355 genome.wustl.edu 37 3 88040175 88040175 + Silent SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_000866.3 +1 validated p.G92 0.113 267 0% 58 29.3% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 CLSTN2 64084 genome.wustl.edu 37 3 140277628 140277628 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_022131.2 +1 validated p.T657I 0.004 146 0% 25 40% 0 - benign(0.001) tolerated(0.4) neutral(0.016) NULL PIK3CA 5290 genome.wustl.edu 37 3 178916891 178916891 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006218.2 +1 reviewed p.R93Q 1.000 188 0.5% 70 58.6% 10 70% probably_damaging(0.999) tolerated(0.24) deleterious(0.528) HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B PIK3CA 5290 genome.wustl.edu 37 3 178951957 178951957 + Missense_Mutation SNP G G T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006218.2 +1 reviewed p.M1004I 1.000 321 0% 82 59.8% 44 77.2% benign(0.008) deleterious(0.02) neutral(0.383) HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like BOD1L 259282 genome.wustl.edu 37 4 13605971 13605971 + Missense_Mutation SNP C C G novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_148894.2 -1 validated p.Q851H 1.000 697 0% 136 47.8% 4 75% probably_damaging(0.998) deleterious(0.01) deleterious(0.880) superfamily_SSF81995 TBCK 93627 genome.wustl.edu 37 4 107154174 107154174 + Silent SNP T T A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_033115.3 -1 validated p.S457 0.995 298 0.7% 34 32.4% 12 41.6% - - - HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC DCHS2 54798 genome.wustl.edu 37 4 155410552 155410552 + Silent SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001142552.1 -1 validated p.T652 0.001 97 0% 159 11.3% 0 - - - - HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like FOXP4 116113 genome.wustl.edu 37 6 41557909 41557909 + Splice_Site SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001012426.1 +1 reviewed e10+1 1.000 58 0% 122 41.8% 1 100% - - - - FOXO3 2309 genome.wustl.edu 37 6 108985092 108985092 + Silent SNP C C G novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001455.3 +1 reviewed p.A352 0.997 66 3% 46 26.1% 28 0% - - - NULL NFE2L3 9603 genome.wustl.edu 37 7 26224435 26224435 + Frame_Shift_Del DEL A A - novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_004289.6 +1 reviewed p.R373fs 0.000 - - - - - - - - - NULL WDR60 55112 genome.wustl.edu 37 7 158734723 158734723 + Missense_Mutation SNP G G C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_018051.4 +1 validated p.W962C 1.000 38 0% 19 57.9% 4 50% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00320,superfamily_WD40 repeat-like MCM4 4173 genome.wustl.edu 37 8 48878888 48878888 + Missense_Mutation SNP C C G novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_005914.2 +1 reviewed p.P325R 1.000 50 0% 143 36.4% 101 27.7% probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_MCM,superfamily_Nucleic_acid_OB HEATR7A 727957 genome.wustl.edu 37 8 145246629 145246629 + Silent SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_032450.2 +1 provisional p.A242 0.049 77 0% 201 25.4% 23 17.3% - - - superfamily_ARM repeat IARS 3376 genome.wustl.edu 37 9 95050494 95050494 + Missense_Mutation SNP T T C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_002161.4 -1 reviewed p.I64V 1.000 274 0% 102 21.6% 28 53.5% possibly_damaging(0.705) tolerated(0.13) deleterious(0.506) HMMPfam_tRNA-synt_1,superfamily_SSF52374 FRMD4A 55691 genome.wustl.edu 37 10 13735744 13735744 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac ENST00000342409 -1 known p.A440V 0.000 20 0% 13 38.5% 0 - unknown(0) - - NULL ZNF25 219749 genome.wustl.edu 37 10 38246020 38246020 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_145011.2 -1 provisional p.A56T 0.000 397 0% 136 26.5% 1 0% benign(0) tolerated(0.16) neutral(0.059) HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) PLCE1 51196 genome.wustl.edu 37 10 96076346 96076373 + Frame_Shift_Del DEL TATTTTTTGATGGAAGAAAAATATTTTA TATTTTTTGATGGAAGAAAAATATTTTA - novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 TATTTTTTGATGGAAGAAAAATATTTTA TATTTTTTGATGGAAGAAAAATATTTTA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_016341.3 +1 reviewed p.F2060fs 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL OR5P2 120065 genome.wustl.edu 37 11 7818013 7818013 + Missense_Mutation SNP G G T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_153444.1 -1 provisional p.F159L 0.000 122 0% 24 41.7% 0 - benign(0.001) tolerated(0.95) - HMMPfam_7tm_1,superfamily_SSF81321 SCUBE2 57758 genome.wustl.edu 37 11 9111264 9111264 + Silent SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_020974.2 -1 validated p.R82 0.997 290 0% 435 38.2% 1 0% - - - HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin PTPRJ 5795 genome.wustl.edu 37 11 48157628 48157628 + Silent SNP C C A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_002843.3 +1 reviewed p.V551 0.010 391 0.3% 119 28.6% 1 100% - - - HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like OR4X1 390113 genome.wustl.edu 37 11 48286000 48286000 + Silent SNP G G T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001004726.1 +1 provisional p.L196 0.000 430 0% 99 33.3% 0 - - - - HMMPfam_7tm_1,superfamily_SSF81321 PVRL1 5818 genome.wustl.edu 37 11 119549377 119549377 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_002855.4 -1 reviewed p.V60M 1.000 76 0% 79 49.4% 4 0% probably_damaging(1) tolerated(0.22) deleterious(0.542) HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin GLIPR1 11010 genome.wustl.edu 37 12 75875788 75875789 + Frame_Shift_Ins INS - - TGACCTAGAATTCATTCACTGGGAGAGAACATCTGGACTGGGTCTGTGCCCATTTTTTCTGTGTCTTCCGCCATCACAAACT novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006851.2 +1 reviewed p.W117fs 0.991:1.000 - - - - - - - - - HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular NID2 22795 genome.wustl.edu 37 14 52507530 52507530 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_007361.3 -1 validated p.P622L 1.000 449 0.2% 139 46.8% 1 0% probably_damaging(1) deleterious(0.01) deleterious(0.905) HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like ZFYVE19 84936 genome.wustl.edu 37 15 41105602 41105602 + Missense_Mutation SNP G G C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001077268.1 +1 validated p.R366T 1.000 129 0% 69 21.7% 10 20% probably_damaging(0.995) deleterious(0.02) deleterious(0.841) NULL CLPX 10845 genome.wustl.edu 37 15 65451045 65451045 + Nonsense_Mutation SNP C C A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_006660.3 -1 provisional p.G254* 1.000 589 0% 92 27.2% 27 7.4% - - - superfamily_P-loop containing nucleoside triphosphate hydrolases LRRK1 79705 genome.wustl.edu 37 15 101605860 101605860 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_024652.3 +1 validated p.V1740M 0.002 166 1.8% 224 37.5% 13 61.5% possibly_damaging(0.801) deleterious(0) deleterious(0.746) NULL CACNA1H 8912 genome.wustl.edu 37 16 1265066 1265066 + Missense_Mutation SNP G G A rs149367557 by1000genomes TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_021098.2 +1 reviewed p.R1675Q 1.000 809 0% 797 63.4% 1 0% probably_damaging(0.996) tolerated(0.08) deleterious(0.762) HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels ASPHD1 253982 genome.wustl.edu 37 16 29912847 29912847 + Silent SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_181718.3 +1 validated p.Q185 1.000 83 0% 187 40.1% 0 - - - - NULL CES3 23491 genome.wustl.edu 37 16 67000757 67000757 + Missense_Mutation SNP C C A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_024922.4 +1 validated p.L351I 0.387 132 0% 84 17.9% 10 50% probably_damaging(0.979) tolerated(1) neutral(0.422) HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases JPH3 57338 genome.wustl.edu 37 16 87637893 87637894 + In_Frame_Ins INS - - CTG novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac ENST00000301008 +1 known p.148in_frame_insA 0.000:0.030 - - - - - - - - - NULL TP53 7157 genome.wustl.edu 37 17 7577022 7577022 + Nonsense_Mutation SNP G G A rs121913344 TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_000546.4 -1 reviewed p.R306* 1.000 361 0% 192 62% 26 53.8% - - - NULL KRT32 3882 genome.wustl.edu 37 17 39620625 39620625 + Missense_Mutation SNP T T C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_002278.3 -1 reviewed p.D260G 1.000 202 0% 127 44.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Filament XYLT2 64132 genome.wustl.edu 37 17 48433313 48433313 + Silent SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_022167.2 +1 reviewed p.V420 0.999 184 0% 332 40.1% 26 57.6% - - - HMMPfam_Branch ARL16 339231 genome.wustl.edu 37 17 79648803 79648803 + Missense_Mutation SNP G G C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_001040025.1 -1 validated p.R177G 0.029 62 0% 162 15.4% 22 27.2% possibly_damaging(0.847) tolerated(0.2) neutral(0.374) HMMPfam_Arf,superfamily_SSF52540 ZNF611 81856 genome.wustl.edu 37 19 53209650 53209650 + Missense_Mutation SNP G G C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_030972.3 -1 validated p.Q220E 0.018 483 0% 146 36.3% 2 100% possibly_damaging(0.804) tolerated(0.74) neutral(0.304) superfamily_C2H2 and C2HC zinc fingers CHD6 84181 genome.wustl.edu 37 20 40053975 40053975 + Missense_Mutation SNP G G C novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_032221.3 -1 reviewed p.R1397G 1.000 338 0% 81 32.1% 13 46.1% probably_damaging(1) deleterious(0) deleterious(0.945) NULL SULF2 55959 genome.wustl.edu 37 20 46288475 46288475 + Splice_Site SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_018837.3 -1 validated e18-1 1.000 306 0% 124 37.9% 2 100% - - - - FAM65C 140876 genome.wustl.edu 37 20 49226165 49226165 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_080829.2 -1 predicted p.R170H 0.992 12 0% 32 28.1% 0 - possibly_damaging(0.843) deleterious(0.01) deleterious(0.729) NULL SLC5A1 6523 genome.wustl.edu 37 22 32480899 32480899 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_000343.3 +1 reviewed p.R300C 1.000 230 0% 53 58.5% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_SSF ENSG00000210082 0 genome.wustl.edu 37 MT 2702 2702 + RNA SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac ENST00000387347 +1 known NULL NULL 181 0% 69 91.3% 2621 83.2% - - - - WWC3 55841 genome.wustl.edu 37 X 10085463 10085463 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_015691.3 +1 validated p.R455H 1.000 31 0% 60 30% 5 0% probably_damaging(0.969) deleterious(0) deleterious(0.856) NULL TAF1 6872 genome.wustl.edu 37 X 70603920 70603920 + Missense_Mutation SNP G G A novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_004606.3 +1 reviewed p.E706K 1.000 401 0% 141 39% 8 87.5% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL GPR112 139378 genome.wustl.edu 37 X 135405545 135405545 + Missense_Mutation SNP C C T novel TCGA-B5-A11I-01A-11D-A10M-09 TCGA-B5-A11I-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 31bc44b9-35ff-43fd-8a01-a834f3b1ce46 a40ae96c-4672-45db-8154-a4a042ecc4ac NM_153834.3 +1 reviewed p.R227C 1.000 114 0% 16 43.8% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_ConA_like_lec_gl