Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain ARID1A 8289 genome.wustl.edu 37 1 27106533 27106533 + Nonsense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_006015.4 +1 reviewed p.W2048* 1.000 162 0% 254 42.5% - - - - - NULL KDM5B 10765 genome.wustl.edu 37 1 202709850 202709850 + Silent SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_006618.3 -1 validated p.D1012 1.000 54 0% 157 52.2% - - - - - HMMPfam_PLU-1 MYT1L 23040 genome.wustl.edu 37 2 1893246 1893246 + Missense_Mutation SNP G G T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_015025.2 -1 validated p.P761T 1.000 26 0% 56 30.4% - - probably_damaging(0.991) tolerated(0.27) deleterious(0.478) HMMPfam_MYT1 TTC31 64427 genome.wustl.edu 37 2 74719492 74719492 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_022492.4 +1 validated p.D361N 0.997 70 0% 96 35.4% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_SM00028,superfamily_TPR-like CTNNB1 1499 genome.wustl.edu 37 3 41266113 41266113 + Missense_Mutation SNP C C G rs121913403 byCluster TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_001098209.1 +1 reviewed p.S37C 1.000 78 0% 133 32.3% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NAALADL2 254827 genome.wustl.edu 37 3 174814723 174814723 + Nonsense_Mutation SNP C C T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_207015.2 +1 validated p.Q63* 1.000 112 0% 133 35.3% - - - - - NULL PIK3CA 5290 genome.wustl.edu 37 3 178921553 178921553 + Missense_Mutation SNP T T A rs121913284 TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_006218.2 +1 reviewed p.N345K 1.000 132 0% 146 32.2% - - probably_damaging(1) tolerated(0.23) deleterious(0.541) HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB FAT4 79633 genome.wustl.edu 37 4 126370947 126370947 + Nonsense_Mutation SNP G G T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_024582.4 +1 validated p.E2926* 1.000 142 0% 152 27.6% - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB4 56131 genome.wustl.edu 37 5 140503755 140503755 + Silent SNP G G T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_018938.2 +1 reviewed p.S725 0.000 121 0% 134 38.1% - - - - - NULL ZFAND3 60685 genome.wustl.edu 37 6 38084517 38084517 + Splice_Site SNP T T G novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_021943.2 +1 validated e5+2 1.000 149 0% 169 42% - - - - - - POM121L12 285877 genome.wustl.edu 37 7 53103801 53103801 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_182595.3 +1 validated p.R146H 0.000 31 0% 49 46.9% - - benign(0) deleterious(0.01) neutral(0.406) NULL ENSG00000215179 0 genome.wustl.edu 37 8 47885721 47885721 + Missense_Mutation SNP C C T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 ENST00000399732 -1 known p.R171Q 1.000 118 0% 121 38.8% - - - - - HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase RAB2A 5862 genome.wustl.edu 37 8 61504446 61504448 + In_Frame_Del DEL AAG AAG - novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 AAG AAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_002865.1 +1 provisional p.E133in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases HRCT1 646962 genome.wustl.edu 37 9 35906583 35906584 + In_Frame_Ins INS - - CCA rs112821450 TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_001039792.1 +1 validated p.104in_frame_insH 0.120:0.016 - - - - - - - - - NULL PRUNE2 158471 genome.wustl.edu 37 9 79324729 79324729 + Missense_Mutation SNP T T C novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_015225.2 -1 validated p.T821A 0.000 55 0% 53 37.7% - - benign(0.067) tolerated(0.06) neutral(0.327) NULL C14orf126 112487 genome.wustl.edu 37 14 31917516 31917516 + Missense_Mutation SNP T T A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_080664.2 -1 validated p.N109I 1.000 251 0.4% 339 32.4% - - probably_damaging(0.969) deleterious(0.03) deleterious(0.776) HMMPfam_Tyr_Deacylase,superfamily_DTyrtRNA_deacyls C15orf55 256646 genome.wustl.edu 37 15 34647708 34647708 + Missense_Mutation SNP T T C novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_175741.1 +1 validated p.M472T 0.824 85 0% 117 28.2% - - benign(0.003) deleterious(0.03) neutral(0.364) NULL SGK269 79834 genome.wustl.edu 37 15 77471930 77471930 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_024776.2 -1 validated p.P780L 1.000 137 0% 200 34.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL NAGPA 51172 genome.wustl.edu 37 16 5075659 5075659 + Silent SNP C C T rs185563042 by1000genomes TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_016256.2 -1 reviewed p.A456 0.959 20 0% 23 39.1% - - - - - NULL SPOP 8405 genome.wustl.edu 37 17 47699360 47699360 + Missense_Mutation SNP C C T novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_001007226.1 -1 reviewed p.E50K 1.000 225 0% 244 27% - - benign(0.22) deleterious(0.05) neutral(0.367) HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like CARM1 10498 genome.wustl.edu 37 19 11032431 11032431 + Nonstop_Mutation SNP T T C novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_199141.1 +1 validated p.*609Q 1.000 28 0% 42 38.1% - - - - - NULL TMEM145 284339 genome.wustl.edu 37 19 42822020 42822020 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_173633.2 +1 validated p.A354T 1.000 77 0% 155 36.1% - - benign(0.076) tolerated(0.15) neutral(0.246) HMMPfam_GpcrRhopsn4 YBEY 54059 genome.wustl.edu 37 21 47707039 47707040 + Splice_Site INS - - AAAAAA rs71318058 byCluster;by1000genomes TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_058181.1 +1 validated e1+2 1.000:0.124 - - - - - - - - - - TBC1D10A 83874 genome.wustl.edu 37 22 30695512 30695512 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 NM_031937.1 -1 provisional p.P113L 1.000 37 0% 31 51.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p ENSG00000198888 0 genome.wustl.edu 37 MT 3421 3421 + Missense_Mutation SNP G G A novel TCGA-B5-A0K0-01A-11W-A062-09 TCGA-B5-A0K0-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f01c66a3-b510-46c9-839d-5f544a28ee37 02e65074-ffda-4795-b8f5-1bfd20bd1019 ENST00000361390 +1 known p.V39I NULL 30 0% 58 15.5% - - benign(0.001) tolerated(1) - HMMPfam_NADHdh