Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain IGSF21 84966 genome.wustl.edu 37 1 18691718 18691718 + Missense_Mutation SNP T T G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_032880.3 +1 validated p.V181G 1.000 15 0% 10 40% - - probably_damaging(0.999) deleterious(0.01) deleterious(0.896) superfamily_SSF48726 RPTN 126638 genome.wustl.edu 37 1 152128310 152128310 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001122965.1 -1 validated p.G422D 0.000 660 0% 769 39.3% - - benign(0.001) tolerated(0.73) neutral(0.002) NULL AHCTF1 25909 genome.wustl.edu 37 1 247040296 247040296 + Missense_Mutation SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_015446.4 -1 validated p.V965L 0.994 167 0% 203 28.1% - - benign(0.104) deleterious(0.04) neutral(0.357) NULL NEB 4703 genome.wustl.edu 37 2 152511861 152511861 + Missense_Mutation SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_004543.4 -1 reviewed p.D2244Y 1.000 291 0% 258 33.7% - - probably_damaging(1) tolerated(0.13) deleterious(0.752) HMMPfam_Nebulin ANKMY1 51281 genome.wustl.edu 37 2 241468496 241468496 + Missense_Mutation SNP G G T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_016552.2 -1 validated p.T215N 1.000 203 0% 160 41.2% - - probably_damaging(0.995) deleterious(0.05) deleterious(0.803) NULL ITPR1 3708 genome.wustl.edu 37 3 4774832 4774832 + Missense_Mutation SNP C C G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001099952.2 +1 reviewed p.R1713G 1.000 138 0% 91 24.2% - - benign(0.002) tolerated(0.06) neutral(0.323) NULL C3orf35 339883 genome.wustl.edu 37 3 37458905 37458905 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_178339.2 +1 validated p.R50W 0.001 171 0% 115 34.8% - - benign(0.227) - - NULL KLHL18 23276 genome.wustl.edu 37 3 47385136 47385136 + Missense_Mutation SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_025010.4 +1 validated p.S477N 1.000 47 0% 26 38.5% - - possibly_damaging(0.513) tolerated(0.35) neutral(0.193) HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain WNT5A 7474 genome.wustl.edu 37 3 55504336 55504336 + Missense_Mutation SNP G G C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_003392.3 -1 reviewed p.C309W 0.998 58 0% 46 15.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_wnt,HMMSmart_SM00097 MITF 4286 genome.wustl.edu 37 3 69928461 69928461 + Missense_Mutation SNP A A C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_198159.2 +1 reviewed p.Q94P 1.000 70 0% 57 29.8% - - probably_damaging(0.983) tolerated(0.19) deleterious(0.478) NULL LPHN3 23284 genome.wustl.edu 37 4 62812764 62812764 + Nonsense_Mutation SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000502815 +1 known p.Y240* 1.000 216 0% 193 13.5% - - benign(0.146) deleterious(0.01) neutral(0.418) superfamily_Family A G protein-coupled receptor-like FBXW7 55294 genome.wustl.edu 37 4 153253747 153253747 + Splice_Site DEL C C - novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_033632.2 -1 reviewed e5+1 1.000 - - - - - - - - - - ZFYVE16 9765 genome.wustl.edu 37 5 79747382 79747382 + Missense_Mutation SNP T T G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001105251.1 +1 validated p.F1154C 1.000 265 0% 214 40.7% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL RASA1 5921 genome.wustl.edu 37 5 86629152 86629152 + Frame_Shift_Del DEL A A - novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_002890.1 +1 reviewed p.S300fs 1.000 - - - - - - - - - HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain PCDHGA3 56112 genome.wustl.edu 37 5 140724410 140724410 + Silent SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_018916.3 +1 reviewed p.D270 0.064 60 0% 40 42.5% - - - - - HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like ENSG00000229119 0 genome.wustl.edu 37 5 165809378 165809378 + Silent SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000449646 +1 known p.I23 1.000 55 0% 68 13.2% - - - - - HMMPfam_Ribosomal_60s PKD1L1 168507 genome.wustl.edu 37 7 47835642 47835642 + Missense_Mutation SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_138295.2 -1 reviewed p.T2767I 0.000 263 0% 195 43.6% - - possibly_damaging(0.923) deleterious(0.01) deleterious(0.778) NULL TMEM168 64418 genome.wustl.edu 37 7 112407663 112407663 + Missense_Mutation SNP G G T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_022484.4 -1 validated p.D561E 0.998 129 0% 130 45.4% - - possibly_damaging(0.918) tolerated(0.43) neutral(0.382) NULL PTN 5764 genome.wustl.edu 37 7 136939627 136939627 + Missense_Mutation SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_002825.5 -1 validated p.A32S 1.000 183 0% 123 36.6% - - benign(0.256) tolerated(0.1) neutral(0.313) NULL EPHX2 2053 genome.wustl.edu 37 8 27361218 27361218 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001979.4 +1 reviewed p.A95V 0.000 38 0% 38 50% - - benign(0.051) tolerated(0.4) neutral(0.019) HMMPfam_Hydrolase,superfamily_SSF56784 ENSG00000213003 0 genome.wustl.edu 37 8 71185743 71185746 + Frame_Shift_Del DEL AAAG AAAG - novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 AAAG AAAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000391685 +1 known p.K46fs 0.998:1.000:1.000:1.000 - - - - - - - - - HMMPfam_NAC CSMD3 114788 genome.wustl.edu 37 8 113364727 113364727 + Missense_Mutation SNP G G T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_198123.1 -1 validated p.P2058H 1.000 181 0% 115 28.7% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain EPPK1 83481 genome.wustl.edu 37 8 144946612 144946612 + Silent SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_031308.1 -1 validated p.D270 0.001 10 0.000 9 0.778 - - - - - superfamily_Plakin repeat TLR4 7099 genome.wustl.edu 37 9 120475396 120475396 + Silent SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_138554.3 +1 reviewed p.F330 0.000 63 0% 70 34.3% - - - - - superfamily_L domain-like GPR21 2844 genome.wustl.edu 37 9 125797430 125797430 + Silent SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_005294.1 +1 provisional p.I195 0.994 128 0% 92 13% - - - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like ARID5B 84159 genome.wustl.edu 37 10 63851073 63851073 + Silent SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_032199.2 +1 validated p.P617 0.140 57 0% 51 52.9% - - - - - NULL KIAA0913 23053 genome.wustl.edu 37 10 75558185 75558185 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_015037.2 +1 validated p.R1384W 1.000 73 0% 59 35.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL DUPD1 338599 genome.wustl.edu 37 10 76797716 76797716 + Missense_Mutation SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001003892.1 -1 provisional p.R181C 1.000 52 0% 36 13.9% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799 OPN4 94233 genome.wustl.edu 37 10 88417837 88417837 + Silent SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001030015.2 +1 validated p.A124 0.001 178 0% 203 65% - - - - - HMMPfam_7tm_1,superfamily_SSF81321 NELL1 4745 genome.wustl.edu 37 11 21555947 21555947 + Missense_Mutation SNP T T C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_006157.3 +1 reviewed p.I558T 1.000 201 0% 202 51.5% - - benign(0.023) tolerated(0.45) neutral(0.013) HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin FOLH1 2346 genome.wustl.edu 37 11 49221914 49221914 + Missense_Mutation SNP C C G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_004476.1 -1 reviewed p.E102Q 1.000 248 0% 271 32.1% - - benign(0.249) tolerated(0.16) neutral(0.085) NULL ALG10 84920 genome.wustl.edu 37 12 34177007 34177007 + Silent SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_032834.3 +1 reviewed p.G94 0.974 480 0% 466 11.2% - - - - - HMMPfam_DIE2_ALG10 TMEM132D 121256 genome.wustl.edu 37 12 130184694 130184694 + Missense_Mutation SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_133448.2 -1 validated p.A210V 0.883 42 0% 21 38.1% - - benign(0) tolerated(0.09) neutral(0.296) NULL LOC341689 341689 genome.wustl.edu 37 13 59103249 59103249 + RNA SNP G G A rs139861067 by1000genomes TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 XR_017487.3 +1 model NULL 0.476 137 0% 132 34.1% - - - - - - NAA30 122830 genome.wustl.edu 37 14 57876144 57876144 + Nonsense_Mutation SNP T T A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001011713.2 +1 validated p.Y333* 1.000 154 0% 158 32.9% - - - - - HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat) RBM25 58517 genome.wustl.edu 37 14 73554760 73554760 + Missense_Mutation SNP G G C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_021239.2 +1 validated p.R145T 1.000 168 0% 199 35.2% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD CLMN 79789 genome.wustl.edu 37 14 95669923 95669923 + Missense_Mutation SNP T T C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_024734.3 -1 validated p.E588G 0.007 202 0% 207 35.7% - - possibly_damaging(0.951) deleterious(0) deleterious(0.839) NULL ZFAND6 54469 genome.wustl.edu 37 15 80429841 80429841 + Silent SNP A A C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_019006.2 +1 provisional p.G166 1.000 202 0% 197 35.5% - - - - - HMMPfam_zf-AN1,HMMSmart_SM00154 MPG 4350 genome.wustl.edu 37 16 129496 129496 + Missense_Mutation SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_002434.2 +1 validated p.A38T 0.023 55 0% 45 11.1% - - benign(0.164) tolerated(0.14) neutral(0.265) NULL TRIM72 493829 genome.wustl.edu 37 16 31235527 31235527 + Silent SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001008274.3 +1 validated p.P295 0.035 25 0% 17 70.6% - - - - - HMMSmart_SM00589 CDH13 1012 genome.wustl.edu 37 16 83065765 83065765 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001257.3 +1 reviewed p.A103V 0.936 110 0% 37 67.6% - - benign(0.101) tolerated(0.33) neutral(0.032) HMMPfam_Cadherin_pro,superfamily_Cadherin TP53 7157 genome.wustl.edu 37 17 7577105 7577106 + Frame_Shift_Ins INS - - GA novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_000546.4 -1 reviewed p.P278fs 1.000:1.000 - - - - - - - - - superfamily_p53-like transcription factors,HMMPfam_P53 SHISA6 388336 genome.wustl.edu 37 17 11459147 11459147 + Missense_Mutation SNP C C T rs185956842 by1000genomes TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_207386.3 +1 validated p.P348L 1.000 162 0.6% 101 62.4% - - probably_damaging(1) deleterious(0.01) deleterious(0.905) NULL CEACAM1 634 genome.wustl.edu 37 19 43031527 43031527 + Silent SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001712.4 -1 reviewed p.P30 0.000 240 0% 357 38.7% - - - - - HMMPfam_V-set LAMP5 24141 genome.wustl.edu 37 20 9496993 9496993 + Missense_Mutation SNP A A G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_012261.2 +1 validated p.K154E 1.000 73 0% 70 18.6% - - possibly_damaging(0.623) tolerated(0.98) neutral(0.217) HMMPfam_Lamp SRMS 6725 genome.wustl.edu 37 20 62173616 62173616 + Silent SNP G G A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_080823.2 -1 provisional p.H282 0.995 96 0% 94 30.9% - - - - - HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like PARVG 64098 genome.wustl.edu 37 22 44583758 44583758 + Nonsense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001137605.1 +1 validated p.Q83* 1.000 155 0% 58 41.4% - - - - - HMMPfam_CH,superfamily_Calponin-homology domain CH-domain RS1 6247 genome.wustl.edu 37 X 18690186 18690186 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_000330.3 -1 reviewed p.M1I 1.000 148 0% 108 32.4% - - unknown(0) deleterious(0) - NULL EFHC2 80258 genome.wustl.edu 37 X 44171993 44171993 + Missense_Mutation SNP C C G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000333807 -1 known p.E18Q 1.000 140 0% 124 13.7% - - possibly_damaging(0.916) tolerated(0.27) neutral(0.400) NULL GATA1 2623 genome.wustl.edu 37 X 48651670 48651670 + Missense_Mutation SNP G G T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_002049.3 +1 reviewed p.C279F 1.000 99 0% 59 23.7% - - probably_damaging(0.999) deleterious(0) deleterious(0.935) HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain) UPRT 139596 genome.wustl.edu 37 X 74516200 74516200 + Silent SNP A A G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_145052.3 +1 reviewed p.G151 0.996 212 0.5% 211 34.1% - - unknown(0) - - superfamily_PRTase-like AMOT 154796 genome.wustl.edu 37 X 112059079 112059079 + Frame_Shift_Del DEL A A - novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_001113490.1 -1 reviewed p.L300fs 0.092 - - - - - - - - - NULL LAMP2 3920 genome.wustl.edu 37 X 119573032 119573032 + Missense_Mutation SNP A A G novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_013995.2 -1 reviewed p.Y404H 1.000 203 0% 165 32.7% - - benign(0) tolerated(1) - HMMPfam_Lamp ENSG00000184785 0 genome.wustl.edu 37 X 134125220 134125220 + Missense_Mutation SNP C C A novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000330288 +1 known p.P110Q 0.001 34 0% 22 18.2% - - benign(0.002) tolerated(0.11) neutral(0.272) NULL MIR891B 100126304 genome.wustl.edu 37 X 145082599 145082599 + RNA SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 ENST00000401245 -1 known NULL 0.000 265 0.4% 213 39% - - - - - - PLXNB3 5365 genome.wustl.edu 37 X 153034623 153034623 + Missense_Mutation SNP C C T novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_005393.2 +1 reviewed p.R468W 0.071 62 0% 36 22.2% - - probably_damaging(0.982) deleterious(0) deleterious(0.871) superfamily_Sema NAA10 8260 genome.wustl.edu 37 X 153199858 153199858 + Missense_Mutation SNP T T C novel TCGA-AX-A0IU-01A-11D-A10B-09 TCGA-AX-A0IU-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 3ea4951a-a8b6-4685-a53e-06a642856f0d 0f48c4a2-2bbf-4c5d-a664-ba8ad412c6e0 NM_003491.2 -1 provisional p.Y31C 1.000 168 0% 110 41.8% - - possibly_damaging(0.936) deleterious(0.01) deleterious(0.787) superfamily_Acyl_CoA_acyltransferase