Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain UBR4 23352 genome.wustl.edu 37 1 19482148 19482148 + Silent SNP A A G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_020765.2 -1 validated p.C2029 0.073 115 0% 106 63.2% 0 - - - - superfamily_ARM repeat HSPG2 3339 genome.wustl.edu 37 1 22174370 22174370 + Missense_Mutation SNP G G C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000453796 -1 known p.H28D 0.430 66 0% 17 41.2% 0 - benign(0.014) tolerated(0.42) neutral(0.015) NULL RPTN 126638 genome.wustl.edu 37 1 152127255 152127255 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001122965.1 -1 validated p.Q774* 0.007 993 0% 587 30.2% 0 - - - - NULL ASH1L 55870 genome.wustl.edu 37 1 155491095 155491095 + Silent SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018489.2 -1 reviewed p.Q72 1.000 314 0% 245 33.1% 0 - - - - NULL SOS1 6654 genome.wustl.edu 37 2 39281778 39281778 + Missense_Mutation SNP T T A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_005633.3 -1 reviewed p.N233Y 1.000 74 0% 124 31.5% 2 50% possibly_damaging(0.647) tolerated(0.27) neutral(0.261) HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain) FOXD4L1 200350 genome.wustl.edu 37 2 114257810 114257810 + Missense_Mutation SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_012184.4 +1 reviewed p.I326T 1.000 38 0% 15 46.7% 0 - benign(0.204) deleterious(0) neutral(0.464) NULL LRP1B 53353 genome.wustl.edu 37 2 141143522 141143522 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018557.2 -1 validated p.D3491N 1.000 280 0% 283 27.6% 0 - probably_damaging(1) tolerated(0.49) deleterious(0.510) HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich LRP2 4036 genome.wustl.edu 37 2 170062145 170062145 + Missense_Mutation SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_004525.2 -1 reviewed p.Y2520C 1.000 62 0% 48 33.3% 0 - probably_damaging(1) tolerated(0.09) deleterious(0.796) HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825 TTN 7273 genome.wustl.edu 37 2 179469886 179469886 + Silent SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000356127 -1 known p.V15438 0.985 151 0% 142 34.5% 0 - - - - HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set WDFY1 57590 genome.wustl.edu 37 2 224763755 224763755 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_020830.3 -1 reviewed p.G173D 1.000 193 0% 115 26.1% 3 33.3% probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMSmart_SM00320,superfamily_WD40 repeat-like ARL4C 10123 genome.wustl.edu 37 2 235404686 235404686 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_005737.3 -1 reviewed p.R182H 1.000 50 0% 17 23.5% 3 66.6% unknown(0) deleterious(0.01) - HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases CAMP 820 genome.wustl.edu 37 3 48265949 48265949 + Missense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_004345.3 +1 validated p.G103R 0.985 104 0% 35 37.1% 2 0% probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_SSF54403 PIK3CA 5290 genome.wustl.edu 37 3 178916938 178916940 + In_Frame_Del DEL GAA GAA - novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_006218.2 +1 reviewed p.E110in_frame_del 1.000:1.000:1.000 - - - - - - - - - superfamily_SSF54236 PCDHAC2 56134 genome.wustl.edu 37 5 140347689 140347689 + Missense_Mutation SNP A A G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018899.5 +1 reviewed p.I446M 0.000 61 0% 20 40% 0 - benign(0) tolerated(0.07) neutral(0.319) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like PCDHB13 56123 genome.wustl.edu 37 5 140594040 140594040 + Silent SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018933.2 +1 reviewed p.F115 0.000 141 0% 105 11.4% 0 - - - - HMMSmart_CA,superfamily_Cadherin PCDHGA1 56114 genome.wustl.edu 37 5 140711672 140711672 + Missense_Mutation SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018912.2 +1 reviewed p.V474A 0.005 150 0% 137 29.2% 0 - benign(0.168) deleterious(0.01) neutral(0.421) HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like C5orf4 10826 genome.wustl.edu 37 5 154210416 154210416 + Missense_Mutation SNP G G T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_032385.3 -1 validated p.T104K 0.997 148 0% 107 29% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL TINAG 27283 genome.wustl.edu 37 6 54214660 54214660 + Missense_Mutation SNP A A C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_014464.3 +1 validated p.Y349S 1.000 124 0% 115 27.8% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases POU3F2 5454 genome.wustl.edu 37 6 99283812 99283812 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_005604.2 +1 validated p.R355W 1.000 83 0% 34 29.4% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like SLC22A2 6582 genome.wustl.edu 37 6 160662520 160662520 + Missense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_003058.2 -1 reviewed p.P496L 1.000 96 0% 61 27.9% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) superfamily_MFS general substrate transporter MGAM 8972 genome.wustl.edu 37 7 141778630 141778630 + Missense_Mutation SNP C C A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000475668 +1 known p.P1891H 0.991 108 0% 74 56.8% 0 - unknown(0) deleterious(0) - HMMSmart_SM00018,superfamily_Trefoil GAPVD1 26130 genome.wustl.edu 37 9 128113134 128113134 + Silent SNP G G T rs181809764 by1000genomes TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_015635.2 +1 validated p.S1211 0.554 174 0% 144 12.5% 0 - - - - NULL ARMC4 55130 genome.wustl.edu 37 10 28272825 28272825 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018076.2 -1 validated p.D256N 0.981 75 0% 73 19.2% 0 - probably_damaging(0.996) deleterious(0) deleterious(0.906) NULL PARD3 56288 genome.wustl.edu 37 10 34805912 34805912 + Missense_Mutation SNP C C G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_019619.3 -1 validated p.R133P 1.000 192 0% 157 26.8% 4 50% probably_damaging(0.955) tolerated(0.08) deleterious(0.699) NULL PTEN 5728 genome.wustl.edu 37 10 89653836 89653837 + Frame_Shift_Ins INS - - ATAC novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000371953 +1 known p.R47fs 1.000:1.000 - - - - - - - - - HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89692922 89692922 + Missense_Mutation SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000371953 +1 known p.C136R 1.000 189 0% 280 22.1% 26 50% probably_damaging(0.995) deleterious(0) deleterious(0.902) HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II BTAF1 9044 genome.wustl.edu 37 10 93778569 93778569 + Missense_Mutation SNP C C A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_003972.2 +1 validated p.N1580K 1.000 162 1.2% 151 21.9% 0 - possibly_damaging(0.95) deleterious(0.04) deleterious(0.742) HMMPfam_SNF2_N EXOC6 54536 genome.wustl.edu 37 10 94757350 94757350 + Silent SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_019053.4 +1 reviewed p.N691 1.000 265 0% 319 26.3% 1 100% - - - HMMPfam_Sec15 ALDH18A1 5832 genome.wustl.edu 37 10 97388190 97388190 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_002860.3 -1 reviewed p.G290R 1.000 108 0% 153 12.4% 1 0% possibly_damaging(0.893) tolerated(0.34) neutral(0.375) HMMPfam_AA_kinase,superfamily_Carbamate kinase-like C11orf42 160298 genome.wustl.edu 37 11 6231683 6231683 + Missense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_173525.2 +1 validated p.V226I 1.000 56 0% 29 48.3% 0 - benign(0.056) tolerated(0.14) neutral(0.253) NULL COPB1 1315 genome.wustl.edu 37 11 14487925 14487925 + Silent SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001144061.1 -1 reviewed p.Y731 1.000 260 0% 194 32% 2 0% - - - HMMPfam_Coatamer_beta_C ESAM 90952 genome.wustl.edu 37 11 124623724 124623724 + Silent SNP A A G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_138961.2 -1 validated p.L331 0.000 160 0% 44 36.4% 0 - - - - NULL TBC1D15 64786 genome.wustl.edu 37 12 72288565 72288565 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_022771.4 +1 reviewed p.Q270* 1.000 146 0% 105 35.2% 3 0% - - - NULL NOS1 4842 genome.wustl.edu 37 12 117710315 117710315 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_000620.2 -1 reviewed p.V572M 1.000 70 0% 25 28% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain MLXIP 22877 genome.wustl.edu 37 12 122618238 122618238 + Missense_Mutation SNP A A G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000319080 +1 known p.K479R 0.263 137 0% 39 28.2% 0 - possibly_damaging(0.793) tolerated(0.19) neutral(0.347) NULL AHNAK2 113146 genome.wustl.edu 37 14 105407004 105407004 + Silent SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_138420.2 -1 validated p.S4928 0.000 99 0% 47 38.3% 1 0% - - - NULL TMC3 342125 genome.wustl.edu 37 15 81625494 81625494 + Nonsense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001080532.1 -1 provisional p.R857* 0.972 119 0% 76 34.2% 0 - - - - NULL TNK1 8711 genome.wustl.edu 37 17 7286288 7286288 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_003985.3 +1 validated p.R15W 1.000 72 0% 39 25.6% 0 - benign(0.167) tolerated(0.08) neutral(0.315) NULL CHD3 1107 genome.wustl.edu 37 17 7813839 7813839 + Missense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001005271.2 +1 reviewed p.R1954H 1.000 94 0% 24 16.7% 7 42.8% probably_damaging(1) - - HMMPfam_CHDCT2 FBXW10 10517 genome.wustl.edu 37 17 18681918 18681918 + Silent SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_031456.3 +1 validated p.L821 0.989 41 0% 57 28.1% 0 - - - - NULL KRT13 3860 genome.wustl.edu 37 17 39659672 39659672 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_153490.2 -1 reviewed p.R201H 1.000 215 0% 104 26.9% 6 66.6% probably_damaging(1) tolerated(0.28) deleterious(0.531) superfamily_Prefoldin,HMMPfam_Filament MYCBPAP 84073 genome.wustl.edu 37 17 48600414 48600414 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_032133.4 +1 validated p.R501W 0.930 123 0.8% 73 11% 0 - probably_damaging(1) deleterious(0.02) deleterious(0.883) NULL B3GNTL1 146712 genome.wustl.edu 37 17 80992968 80992968 + Silent SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001009905.1 -1 validated p.Y95 1.000 117 0.9% 120 31.7% 0 - - - - HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases DCC 1630 genome.wustl.edu 37 18 49867227 49867227 + Missense_Mutation SNP A A T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_005215.3 +1 reviewed p.S24C 1.000 327 0% 211 34.6% 0 - benign(0.23) deleterious(0.04) neutral(0.372) NULL MBP 4155 genome.wustl.edu 37 18 74729151 74729151 + Silent SNP C C A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001025101.1 -1 reviewed p.A71 0.994 163 0% 48 22.9% 3 0% - - - NULL HIF3A 64344 genome.wustl.edu 37 19 46834437 46834437 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 ENST00000457771 +1 known p.R433* 0.638 135 0% 63 27% 0 - - - - NULL ZNF701 55762 genome.wustl.edu 37 19 53086548 53086548 + Missense_Mutation SNP T T G novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_018260.2 +1 validated p.C412W 0.826 252 0% 158 27.2% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes TMC4 147798 genome.wustl.edu 37 19 54668298 54668298 + Missense_Mutation SNP G G A novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001145303.1 -1 validated p.A334V 0.069 31 0% 12 33.3% 2 50% probably_damaging(0.979) deleterious(0.02) deleterious(0.805) NULL SSTR4 6754 genome.wustl.edu 37 20 23016655 23016655 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001052.2 +1 validated p.L179F 0.863 60 0% 22 36.4% 0 - probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMPfam_7tm_1,superfamily_SSF81321 EP300 2033 genome.wustl.edu 37 22 41562637 41562637 + Nonsense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001429.3 +1 reviewed p.R1281* 1.000 176 0% 241 31.1% 0 - - - - HMMPfam_DUF906 SMC1B 27127 genome.wustl.edu 37 22 45809375 45809375 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_148674.3 -1 validated p.R25Q 0.950 37 0% 11 36.4% 0 - benign(0.028) tolerated(0.19) neutral(0.051) HMMPfam_SMC_N,superfamily_SSF52540 BMX 660 genome.wustl.edu 37 X 15560257 15560257 + Missense_Mutation SNP T T C novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001721.6 +1 reviewed p.M516T 1.000 193 0% 146 30.8% 0 - probably_damaging(0.973) tolerated(0.07) deleterious(0.734) HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like ZRSR2 8233 genome.wustl.edu 37 X 15838437 15838439 + In_Frame_Del DEL GTG GTG - novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 GTG GTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_005089.3 +1 reviewed p.G313in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1 GPRASP1 9737 genome.wustl.edu 37 X 101910265 101910265 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001099410.1 +1 reviewed p.T475I 0.367 110 0% 62 27.4% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) NULL FAM122C 159091 genome.wustl.edu 37 X 133948871 133948871 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_138819.3 +1 validated p.R61C 0.002 142 0% 104 18.3% 0 - possibly_damaging(0.875) deleterious(0) deleterious(0.784) NULL BRS3 680 genome.wustl.edu 37 X 135570682 135570682 + Frame_Shift_Del DEL A A - novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_001727.1 +1 validated p.T137fs 1.000 - - - - - - - - - HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321 GABRA3 2556 genome.wustl.edu 37 X 151514086 151514086 + Missense_Mutation SNP C C T novel TCGA-AP-A0LQ-01A-12D-A10B-09 TCGA-AP-A0LQ-10A-01D-A10B-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 94e0a8d1-ee84-436f-a51d-d6b0368613b7 f68f7d0c-ff51-4987-8da9-468f4709f279 NM_000808.3 -1 reviewed p.G77S 1.000 168 0% 93 34.4% 0 - probably_damaging(1) deleterious(0.03) deleterious(0.865) HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD