Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain LCE2C 353140 genome.wustl.edu 37 1 152648758 152648758 + Silent SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_178429.2 +1 validated p.P89 0.000 119 0% 71 29.6% - - - - - NULL CADM3 57863 genome.wustl.edu 37 1 159169659 159169659 + Silent SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_021189.3 +1 validated p.R391 1.000 106 0% 108 30.6% - - - - - HMMSmart_4.1m STAMBP 10617 genome.wustl.edu 37 2 74089382 74089382 + Missense_Mutation SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_006463.3 +1 reviewed p.R424Q 1.000 74 0% 90 25.6% - - probably_damaging(1) deleterious(0) deleterious(0.945) NULL DRD5 1816 genome.wustl.edu 37 4 9784321 9784321 + Missense_Mutation SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_000798.4 +1 reviewed p.R223Q 1.000 84 0% 85 18.8% - - probably_damaging(0.979) tolerated(0.14) deleterious(0.671) HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like N4BP2 55728 genome.wustl.edu 37 4 40146282 40146282 + Missense_Mutation SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_018177.3 +1 reviewed p.A1669T 1.000 171 0% 172 24.4% - - probably_damaging(0.995) deleterious(0.03) deleterious(0.822) HMMPfam_DUF1771 RBM47 54502 genome.wustl.edu 37 4 40438541 40438541 + Frame_Shift_Del DEL C C - novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001098634.1 -1 validated p.G416fs 1.000 - - - - - - - - - NULL ODZ3 55714 genome.wustl.edu 37 4 183714430 183714430 + Missense_Mutation SNP C C T rs146065963 by1000genomes TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001080477.1 +1 provisional p.T2202M 0.998 144 0% 145 31.7% - - possibly_damaging(0.579) tolerated(0.07) deleterious(0.518) NULL CDH10 1008 genome.wustl.edu 37 5 24487772 24487772 + Nonstop_Mutation SNP T T A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_006727.2 -1 reviewed p.*789Y 1.000 337 0% 415 16.1% - - - - - NULL PIK3R1 5295 genome.wustl.edu 37 5 67589577 67589609 + In_Frame_Del DEL AAAAATTACATGAATATAACACTCAGTTTCAAG AAAAATTACATGAATATAACACTCAGTTTCAAG - novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 AAAAATTACATGAATATAACACTCAGTTTCAAG AAAAATTACATGAATATAACACTCAGTTTCAAG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_181523.1 +1 reviewed p.LHEYNTQFQEK449in_frame_del 1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - NULL ENSG00000250004 0 genome.wustl.edu 37 5 140603036 140603036 + RNA SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000515856 -1 novel NULL 0.000 64 0% 57 63.2% - - - - - - ENSG00000248255 0 genome.wustl.edu 37 5 147040101 147040102 + RNA INS - - AAAC novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000506321 +1 known NULL 0.002:0.003 - - - - - - - - - - DHX16 8449 genome.wustl.edu 37 6 30633356 30633356 + Missense_Mutation SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_003587.4 -1 reviewed p.R274Q 0.691 100 1% 78 30.8% - - possibly_damaging(0.943) tolerated(0.13) deleterious(0.640) NULL AIM1 202 genome.wustl.edu 37 6 107008712 107008712 + Frame_Shift_Del DEL C C - novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001624.2 +1 validated p.R1556fs 0.273 - - - - - - - - - HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF HECA 51696 genome.wustl.edu 37 6 139488422 139488422 + Missense_Mutation SNP C C A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_016217.2 +1 reviewed p.H425N 1.000 91 0% 101 28.7% - - possibly_damaging(0.797) tolerated(0.17) neutral(0.358) NULL AUTS2 26053 genome.wustl.edu 37 7 70231244 70231244 + Missense_Mutation SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_015570.2 +1 validated p.T538M 1.000 23 0% 37 21.6% - - probably_damaging(0.999) deleterious(0.05) deleterious(0.836) NULL LRRN3 54674 genome.wustl.edu 37 7 110763280 110763280 + Missense_Mutation SNP T T G novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001099658.1 +1 validated p.L151W 1.000 198 0% 170 12.9% - - probably_damaging(0.977) deleterious(0.02) deleterious(0.802) HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like ZNF462 58499 genome.wustl.edu 37 9 109690955 109690964 + Frame_Shift_Del DEL ACTTTGGAGA ACTTTGGAGA - novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 ACTTTGGAGA ACTTTGGAGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_021224.4 +1 validated p.T1588fs 1.000:1.000:0.002:0.006:0.998:1.000:1.000:1.000:1.000:1.000 - - - - - - - - - HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24 PTEN 5728 genome.wustl.edu 37 10 89692905 89692905 + Missense_Mutation SNP G G A rs121913292 TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000371953 +1 known p.R130Q 1.000 279 0% 458 20.5% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II PTEN 5728 genome.wustl.edu 37 10 89720803 89720804 + Frame_Shift_Ins INS - - A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000371953 +1 known p.T318fs 0.997:1.000 - - - - - - - - - superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 PTEN 5728 genome.wustl.edu 37 10 89720852 89720852 + Missense_Mutation SNP C C G rs121909231 byCluster TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000371953 +1 known p.R335G 1.000 298 0% 387 38.8% - - probably_damaging(0.986) deleterious(0) deleterious(0.879) superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2 CRTAC1 55118 genome.wustl.edu 37 10 99667888 99667888 + Silent SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_018058.4 -1 validated p.S244 0.999 21 0% 38 44.7% - - - - - superfamily_Integrin alpha N-terminal domain OR4C3 256144 genome.wustl.edu 37 11 48346568 48346568 + Nonsense_Mutation SNP G G T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001004702.1 +1 provisional p.E26* 0.000 411 0% 494 13.4% - - - - - NULL RNF151 146310 genome.wustl.edu 37 16 2017804 2017804 + Missense_Mutation SNP T T G rs146108433 by1000genomes TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_174903.4 +1 provisional p.I76M 0.997 5 0.000 13 0.769 - - probably_damaging(0.995) deleterious(0.04) deleterious(0.806) superfamily_SSF57850 GSG1L 146395 genome.wustl.edu 37 16 27895830 27895830 + Missense_Mutation SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_001109763.1 -1 validated p.A176V 1.000 30 0% 36 16.7% - - possibly_damaging(0.864) tolerated(0.07) deleterious(0.653) NULL BPTF 2186 genome.wustl.edu 37 17 65889598 65889598 + Missense_Mutation SNP G G C novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_182641.3 +1 reviewed p.R723P 1.000 173 0% 186 28% - - probably_damaging(0.998) deleterious(0.01) deleterious(0.880) NULL LOC100287226 100287226 genome.wustl.edu 37 19 22498499 22498499 + Silent SNP A A G novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 XM_002343636.1 +1 model p.V627 0.014 217 0% 177 26.6% - - - - - HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers ZNF585A 199704 genome.wustl.edu 37 19 37647249 37647249 + Silent SNP C C A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000356958 -1 known p.V27 0.997 247 0% 255 17.3% - - - - - HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352) MARK4 57787 genome.wustl.edu 37 19 45774910 45774910 + Missense_Mutation SNP G G T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_031417.2 +1 provisional p.V244F 1.000 72 0% 69 18.8% - - probably_damaging(1) deleterious(0) deleterious(0.945) HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase PGLYRP1 8993 genome.wustl.edu 37 19 46522650 46522650 + Missense_Mutation SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_005091.2 -1 validated p.R146Q 0.970 69 0% 66 30.3% - - probably_damaging(1) tolerated(0.33) deleterious(0.524) HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP ARHGAP35 2909 genome.wustl.edu 37 19 47424544 47424544 + Missense_Mutation SNP G G C novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_004491.4 +1 reviewed p.R871P 1.000 148 0% 180 26.1% - - probably_damaging(0.964) tolerated(0.23) neutral(0.448) NULL ZBTB46 140685 genome.wustl.edu 37 20 62421796 62421796 + Silent SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_025224.2 -1 provisional p.V105 1.000 16 0% 17 35.3% - - - - - HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB SCAF4 57466 genome.wustl.edu 37 21 33074669 33074669 + Missense_Mutation SNP G G T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_020706.2 -1 reviewed p.N115K 1.000 204 0% 201 22.4% - - unknown(0) deleterious(0.02) - HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain TEX13A 56157 genome.wustl.edu 37 X 104464339 104464339 + Missense_Mutation SNP G G A novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 ENST00000413579 -1 known p.A180V 0.000 86 0% 76 23.7% - - benign(0.001) tolerated(0.37) neutral(0.019) NULL NKAP 79576 genome.wustl.edu 37 X 119077524 119077524 + Silent SNP C C T novel TCGA-A5-A0GE-01A-11W-A062-09 TCGA-A5-A0GE-10A-01W-A062-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7133a4bd-c17c-43b9-9059-1d4156d910a4 8d1600e5-36d2-47fe-bf28-9b415771eba4 NM_024528.3 -1 reviewed p.S15 0.000 39 0% 21 28.6% - - - - - NULL