Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
RBAK-RBAKDN	0	genome.wustl.edu	37	7	5112706	5112706	+	Missense_Mutation	SNP	G	G	C			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	7	5112706	5112706	G	C	SNP	RBAK-RBAKDN	ENST00000407184	human	ensembl	74_37	1	known	missense	c.589	p.A197P	0.001	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	77	1	1.28	65	17	20.73	84	1	1.18	67	6	8.22
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	435	0	0	391	36	8.43	147	0	0.00	132	13	8.97
GPR158	0	genome.wustl.edu	37	10	25684867	25684867	+	Missense_Mutation	SNP	G	G	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	10	25684867	25684867	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	1	known	missense	c.1036	p.V346I	1	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	0	no_errors	rs369165750	G->A	0	58	0	0	37	4	9.76	267	0	0.00	257	21	7.55
TAOK3	0	genome.wustl.edu	37	12	118599688	118599688	+	Nonsense_Mutation	SNP	C	C	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	12	118599688	118599688	C	A	SNP	TAOK3	ENST00000392533	human	ensembl	74_37	-1	known	nonsense	c.2044	p.E682*	1	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	23	0	0	18	4	18.18	187	0	0.00	253	22	7.94
DPEP1	0	genome.wustl.edu	37	16	89696827	89696827	+	Silent	SNP	C	C	T			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	16	89696827	89696827	C	T	SNP	DPEP1	ENST00000261615	human	ensembl	74_37	1	known	silent	c.9	p.S3	0.103	NULL	pfam_Peptidase_M19	0	no_errors	rs548760657	C->T	0	57	0	0	61	6	8.96	79	0	0.00	70	4	5.41
KCNH4	0	genome.wustl.edu	37	17	40318361	40318361	+	Silent	SNP	G	G	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	17	40318361	40318361	G	A	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	silent	c.1794	p.S598	0.665	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	0	no_errors	0	0	0	22	0	0	25	6	19.35	139	0	0.00	106	6	5.36
CCL25	0	genome.wustl.edu	37	19	8122791	8122791	+	Missense_Mutation	SNP	A	A	G			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	19	8122791	8122791	A	G	SNP	CCL25	ENST00000390669	human	ensembl	74_37	1	known	missense	c.432	p.I144M	0	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	0	no_errors	0	0	0	90	0	0	67	10	12.99	236	0	0.00	225	12	5.06
HELZ2	0	genome.wustl.edu	37	20	62191616	62191616	+	Missense_Mutation	SNP	G	G	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	20	62191616	62191616	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	missense	c.7565	p.T2522M	0.843	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	0	no_errors	rs561821964	G->A	0.9998,0.0001997	57	0	0	43	5	10.42	140	0	0.00	117	6	4.84
FTHL17	0	genome.wustl.edu	37	X	31089833	31089833	+	Missense_Mutation	SNP	G	G	T			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	X	31089833	31089833	G	T	SNP	FTHL17	ENST00000359202	human	ensembl	74_37	-1	known	missense	c.238	p.H80N	0.974	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	0	no_errors	0	0	0	28	0	0	22	4	15.38	8	0	0.00	5	0	0.00
PPP1R14B	0	genome.wustl.edu	37	11	64014017	64014017	+	Silent	SNP	C	C	G			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	11	64014017	64014017	C	G	SNP	PPP1R14B	ENST00000309318	human	ensembl	74_37	-1	known	silent	c.129	p.G43	0	superfamily_PP1_inhibitor	pfam_PP1_inhibitor,superfamily_PP1_inhibitor	0	no_errors	rs1063811	C->G	0	64	0	0	39	4	9.3	14	0	0.00	7	0	0.00
ENSG00000173213	0	genome.wustl.edu	37	18	47408	47408	+	Silent	SNP	G	G	A			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	18	47408	47408	G	A	SNP	ENSG00000173213	ENST00000308911	human	ensembl	74_37	-1	known	silent	c.1317	p.A439	0.931	prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	0	no_errors	0	0	0	21	0	0	20	7	25.93	0	0	0.00	0	0	0.00
BHLHA9	0	genome.wustl.edu	37	17	1174394	1174394	+	Frame_Shift_Del	DEL	C	C	-			TCGA-YT-A95E-01A-11D-A428-09	TCGA-YT-A95E-10A-01D-A42B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3bce0fcd-ac9e-4258-8d3d-512182391086	408f6213-e92d-414e-b095-4d09713ba744	17	1174394	1174394	C	0	DEL	BHLHA9	ENST00000391429	human	ensembl	74_37	1	known	frame_shift_del	c.537	p.P181fs	0.021	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	0	no_errors	0	0	0	8	0	0	8	2	20	3	0	0.00	2	0	0.00