Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val DNAJC8 0 genome.wustl.edu 37 1 28536509 28536509 + Missense_Mutation SNP C C A TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 1 28536509 28536509 C A SNP DNAJC8 ENST00000263697 human ensembl 74_37 -1 known missense c.373 p.A125S 1 superfamily_DnaJ_domain pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain 0 no_errors 0 0 0 42 0 0 46 15 24.59 76 0 0.00 82 31 27.43 NRAS 0 genome.wustl.edu 37 1 115256529 115256529 + Missense_Mutation SNP T T C TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 1 115256529 115256529 T C SNP NRAS ENST00000369535 human ensembl 74_37 -1 known missense c.182 p.Q61R 1 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors rs11554290 T->A,C,G 0 60 0 0 58 21 26.58 223 0 0.00 140 93 39.74 ATP1A2 0 genome.wustl.edu 37 1 160098515 160098515 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 1 160098515 160098515 C T SNP ATP1A2 ENST00000361216 human ensembl 74_37 1 known missense c.1091 p.T364M 1 pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase 0 no_errors 0 0 0 28 0 0 16 23 58.97 60 0 0.00 37 32 46.38 RFWD2 0 genome.wustl.edu 37 1 176105648 176105648 + Missense_Mutation SNP C C G TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 1 176105648 176105648 C G SNP RFWD2 ENST00000367669 human ensembl 74_37 -1 known missense c.867 p.L289F 1 NULL pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom 0 no_errors 0 0 0 26 0 0 21 2 8.7 151 0 0.00 177 11 5.85 ADCY3 0 genome.wustl.edu 37 2 25043661 25043661 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 2 25043661 25043661 C T SNP ADCY3 ENST00000260600 human ensembl 74_37 -1 known missense c.3184 p.D1062N 1 pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase 0 no_errors 0 0 0 80 0 0 57 24 29.63 159 0 0.00 136 67 33.00 ANXA4 0 genome.wustl.edu 37 2 70008648 70008648 + RNA SNP A A T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 2 70008648 70008648 A T SNP ANXA4 ENST00000460439 human ensembl 74_37 1 known rna NULL NULL 0.807 0 0 0 no_errors 0 0 0 53 0 0 34 13 27.66 197 0 0.00 113 77 40.31 PLXND1 0 genome.wustl.edu 37 3 129278491 129278491 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 3 129278491 129278491 C T SNP PLXND1 ENST00000324093 human ensembl 74_37 -1 known missense c.5269 p.D1757N 1 pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom 0 no_errors 0 0 0 83 0 0 92 7 7.07 120 0 0.00 158 11 6.51 SLC23A1 0 genome.wustl.edu 37 5 138716555 138716555 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 5 138716555 138716555 C T SNP SLC23A1 ENST00000353963 human ensembl 74_37 -1 known missense c.329 p.S110N 1 pfam_Xant/urac/vitC pfam_Xant/urac/vitC 0 no_errors 0 0 0 23 0 0 15 6 28.57 33 0 0.00 44 20 30.77 PCDHB18 0 genome.wustl.edu 37 5 140615380 140615380 + RNA SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 5 140615380 140615380 C T SNP PCDHB18 ENST00000526308 human ensembl 74_37 1 known rna NULL NULL 0.871 0 0 0 no_errors 0 0 0 86 0 0 52 27 33.75 72 0 0.00 62 43 40.19 ENSG00000254741 0 genome.wustl.edu 37 8 144661891 144661891 + RNA SNP C C A TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 8 144661891 144661891 C A SNP ENSG00000254741 ENST00000529247 human ensembl 74_37 1 known rna NULL NULL 0.01 0 0 0 no_errors 0 0 0 20 0 0 17 8 32 128 0 0.00 87 43 33.08 GBA2 0 genome.wustl.edu 37 9 35748561 35748561 + Missense_Mutation SNP A A T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 9 35748561 35748561 A T SNP GBA2 ENST00000545786 human ensembl 74_37 -1 known missense c.141 p.S47R 0.001 NULL pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type 0 no_errors 0 0 0 36 0 0 21 13 38.24 164 2 1.20 144 53 26.90 GFI1B 0 genome.wustl.edu 37 9 135862743 135862743 + Missense_Mutation SNP A A C TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 9 135862743 135862743 A C SNP GFI1B ENST00000339463 human ensembl 74_37 1 known missense c.175 p.N59H 0 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 0 no_errors 0 0 0 56 0 0 27 7 20.59 121 0 0.00 106 45 29.80 NRG3 0 genome.wustl.edu 37 10 83992498 83992498 + Missense_Mutation SNP G G T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 10 83992498 83992498 G T SNP NRG3 ENST00000556918 human ensembl 74_37 1 novel missense c.236 p.C79F 0.001 NULL pfam_Neuregulin_1_C,pfscan_EG-like_dom 0 no_errors 0 0 0 51 0 0 22 11 32.35 120 0 0.00 124 31 20.00 GALNT9 0 genome.wustl.edu 37 12 132683757 132683757 + Missense_Mutation SNP G G A TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 12 132683757 132683757 G A SNP GALNT9 ENST00000328957 human ensembl 74_37 -1 known missense c.1459 p.R487W 0.983 pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin 0 no_errors 0 0 0 90 0 0 62 45 42.06 29 0 0.00 35 17 32.69 TBC1D3P5 0 genome.wustl.edu 37 17 25756876 25756876 + RNA SNP G G A TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 17 25756876 25756876 G A SNP TBC1D3P5 ENST00000581469 human ensembl 74_37 1 known rna NULL NULL 0.229 0 0 0 no_errors rs564957228 G->A 0.9998,0.0001997 51 0 0 27 10 27.03 69 0 0.00 64 35 35.35 EVI5L 0 genome.wustl.edu 37 19 7913876 7913876 + Missense_Mutation SNP G G A TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 19 7913876 7913876 G A SNP EVI5L ENST00000538904 human ensembl 74_37 1 known missense c.397 p.D133N 0.977 pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom 0 no_errors 0 0 0 55 0 0 36 18 33.33 55 0 0.00 40 13 24.53 MUC16 0 genome.wustl.edu 37 19 9088508 9088508 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 19 9088508 9088508 C T SNP MUC16 ENST00000397910 human ensembl 74_37 -1 known missense c.3307 p.V1103I 0 NULL pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom 0 no_errors rs533537740 C->T 0.9998,0.0001997 57 0 0 54 15 21.74 121 0 0.00 95 35 26.72 ANGPTL6 0 genome.wustl.edu 37 19 10205575 10205575 + Missense_Mutation SNP G G C TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 19 10205575 10205575 G C SNP ANGPTL6 ENST00000253109 human ensembl 74_37 -1 known missense c.622 p.R208G 0.006 NULL pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom 0 no_errors 0 0 0 30 0 0 18 13 40.62 122 0 0.00 92 45 32.85 SMARCA4 0 genome.wustl.edu 37 19 11141406 11141406 + Missense_Mutation SNP G G T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 19 11141406 11141406 G T SNP SMARCA4 ENST00000358026 human ensembl 74_37 1 known missense c.3383 p.G1128V 1 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,prints_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain 0 no_errors 0 0 0 61 0 0 48 17 26.15 158 2 1.25 149 83 35.78 NF2 0 genome.wustl.edu 37 22 30050679 30050679 + Nonsense_Mutation SNP G G T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 22 30050679 30050679 G T SNP NF2 ENST00000338641 human ensembl 74_37 1 known nonsense c.481 p.G161* 1 pirsf_ERM,pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,prints_Tropomyosin 0 no_errors 0 0 0 60 0 0 23 18 42.86 255 0 0.00 98 107 52.20 C22orf24 0 genome.wustl.edu 37 22 32330345 32330345 + Missense_Mutation SNP G G T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 22 32330345 32330345 G T SNP C22orf24 ENST00000543051 human ensembl 74_37 -1 known missense c.443 p.P148H 0.009 NULL NULL 0 no_errors 0 0 0 48 0 0 34 11 24.44 158 0 0.00 95 29 23.39 CUL4B 0 genome.wustl.edu 37 X 119694117 119694119 + In_Frame_Del DEL GAG GAG - TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 GAG GAG GAG - GAG GAG Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 X 119694117 119694119 GAG 0 DEL CUL4B ENST00000404115 human ensembl 74_37 -1 known in_frame_del c.431_429 p.S146in_frame_del 0.999:1.000:1.000 NULL pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology 0 no_errors 0 0 0 36 1 2.7 31 4 11.43 76 1 1.30 110 6 5.17 MALAT1 0 genome.wustl.edu 37 11 65269764 65269765 + RNA INS - - T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 - - - T - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 11 65269764 65269765 0 T INS MALAT1 ENST00000534336 human ensembl 74_37 1 known rna NULL NULL 0.981:0.994 0 0 0 no_errors 0 0 0 64 0 0 63 38 37.62 283 0 0.00 232 100 30.12 IRX3 0 genome.wustl.edu 37 16 54318612 54318614 + In_Frame_Del DEL GCG GCG - TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 GCG GCG GCG - GCG GCG Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 16 54318612 54318614 GCG 0 DEL IRX3 ENST00000329734 human ensembl 74_37 -1 known in_frame_del c.1181_1179 p.A394in_frame_del 0.605:0.606:0.549 NULL pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom 0 no_errors 0 0 0 14 0 0 13 3 18.75 25 0 0.00 11 2 15.38 ZNF714 0 genome.wustl.edu 37 19 21300350 21300350 + Frame_Shift_Del DEL A A - TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 A A A - A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 19 21300350 21300350 A 0 DEL ZNF714 ENST00000596143 human ensembl 74_37 1 known frame_shift_del c.880 p.N294fs 0.085 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box 0 no_errors 0 0 0 43 0 0 37 14 27.45 78 0 0.00 64 21 24.71 ERVW-1 0 genome.wustl.edu 37 7 92098389 92098389 + Missense_Mutation SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 7 92098389 92098389 C T SNP ERVW-1 ENST00000493463 human ensembl 74_37 -1 known missense c.1307 p.G436E 0.295 pfam_TLV/ENV_coat_polyprotein pfam_TLV/ENV_coat_polyprotein 0 no_errors 0 0 0 29 0 0 15 11 42.31 0 0 0.00 0 0 0.00 ENSG00000252176 0 genome.wustl.edu 37 8 39418512 39418512 + RNA SNP C C T TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 8 39418512 39418512 C T SNP ENSG00000252176 ENST00000516367 human ensembl 74_37 1 novel rna NULL NULL 0 0 0 0 no_errors rs79987949 C->T 0 17 0 0 24 8 25 0 0 0.00 0 0 0.00 COL4A2-AS2 0 genome.wustl.edu 37 13 111109415 111109415 + RNA SNP C C G TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 13 111109415 111109415 C G SNP COL4A2-AS2 ENST00000458403 human ensembl 74_37 -1 known rna NULL NULL 0.656 0 0 0 no_errors rs9521779 C->G 0 16 0 0 9 12 57.14 0 0 0.00 0 0 0.00 GOLGA6L5 0 genome.wustl.edu 37 15 85053254 85053254 + RNA SNP T T C TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 15 85053254 85053254 T C SNP GOLGA6L5 ENST00000414190 human ensembl 74_37 -1 known rna NULL NULL 0.973 0 0 0 no_errors 0 0 0 12 0 0 6 3 33.33 0 0 0.00 0 0 0.00 ENSG00000252176 0 genome.wustl.edu 37 8 39418521 39418522 + RNA DEL AC AC - TCGA-XU-A92Z-01A-11D-A423-09 TCGA-XU-A92Z-10A-01D-A426-09 AC AC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq ec301622-3933-4ba4-8190-7bb2a99e3a8d 281773d4-370a-40bc-aa2e-eaa2777e70f3 8 39418521 39418522 AC 0 DEL ENSG00000252176 ENST00000516367 human ensembl 74_37 1 novel rna NULL NULL 0.000:0.000 0 0 0 no_errors rs370187960 TAC->T 0 15 0 0 21 4 16 0 0 0.00 0 0 0.00