Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val GPR112 0 genome.wustl.edu 37 X 135428327 135428327 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f X 135428327 135428327 G A SNP GPR112 ENST00000370652 human ensembl 74_37 1 known missense c.2462 p.G821D 0.006 NULL pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like 0 no_errors 0 0 0 36 0 0 26 12 31.58 252 0 0.00 203 109 34.94 MST1L 0 genome.wustl.edu 37 1 17084313 17084313 + RNA SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 1 17084313 17084313 C T SNP MST1L ENST00000455405 human ensembl 74_37 -1 known rna NULL NULL 1 0 0 0 no_errors 0 0 0 253 0 0 201 18 8.22 379 1 0.26 446 34 7.08 OPRD1 0 genome.wustl.edu 37 1 29189517 29189517 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 1 29189517 29189517 G A SNP OPRD1 ENST00000234961 human ensembl 74_37 1 known missense c.841 p.V281I 1 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Neuropept_B/W_rcpt pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Delta_opi_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt 0 no_errors 0 0 0 61 0 0 20 8 28.57 86 0 0.00 54 31 36.05 ZBED6 0 genome.wustl.edu 37 1 203768760 203768760 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 1 203768760 203768760 G A SNP ZBED6 ENST00000550078 human ensembl 74_37 1 known missense c.2110 p.V704M 1 superfamily_RNaseH-like_dom pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd 0 no_errors 0 0 0 29 1 3.33 22 13 37.14 191 0 0.00 168 77 31.43 CCDC142 0 genome.wustl.edu 37 2 74708427 74708427 + Missense_Mutation SNP A A C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 74708427 74708427 A C SNP CCDC142 ENST00000393965 human ensembl 74_37 -1 known missense c.1181 p.L394R 0.116 NULL NULL 0 no_errors 0 0 0 30 0 0 12 12 50 115 1 0.86 94 26 21.67 FIGN 0 genome.wustl.edu 37 2 164466135 164466135 + Missense_Mutation SNP A A T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 164466135 164466135 A T SNP FIGN ENST00000333129 human ensembl 74_37 -1 known missense c.2207 p.I736N 1 superfamily_P-loop_NTPase pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase 0 no_errors 0 0 0 69 0 0 50 22 30.14 184 0 0.00 127 54 29.83 HJURP 0 genome.wustl.edu 37 2 234749861 234749861 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 234749861 234749861 G A SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.1565 p.S522L 0 NULL pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N 0 no_errors 0 0 0 71 0 0 33 17 34 246 0 0.00 159 76 32.20 HJURP 0 genome.wustl.edu 37 2 234750245 234750245 + Missense_Mutation SNP G G C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 234750245 234750245 G C SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.1181 p.A394G 0 NULL pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N 0 no_errors 0 0 0 63 0 0 30 11 26.83 247 0 0.00 201 101 33.33 HJURP 0 genome.wustl.edu 37 2 234750577 234750577 + Missense_Mutation SNP G G C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 234750577 234750577 G C SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.849 p.I283M 1 pfam_HJURP pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N 0 no_errors 0 0 0 45 0 0 18 12 40 220 0 0.00 133 60 31.09 HJURP 0 genome.wustl.edu 37 2 234750681 234750681 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 234750681 234750681 G A SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.745 p.P249S 0 NULL pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N 0 no_errors 0 0 0 44 0 0 27 6 18.18 257 0 0.00 191 72 27.38 HJURP 0 genome.wustl.edu 37 2 234750835 234750835 + Missense_Mutation SNP G G C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 234750835 234750835 G C SNP HJURP ENST00000411486 human ensembl 74_37 -1 known missense c.591 p.I197M 0.001 NULL pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N 0 no_errors 0 0 0 19 0 0 9 6 40 213 0 0.00 182 59 24.38 PPARGC1A 0 genome.wustl.edu 37 4 23814740 23814740 + Missense_Mutation SNP T T C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 4 23814740 23814740 T C SNP PPARGC1A ENST00000264867 human ensembl 74_37 -1 known missense c.1802 p.Y601C 1 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom 0 no_errors 0 0 0 54 0 0 28 26 48.15 200 0 0.00 115 54 31.95 ZNF192P1 0 genome.wustl.edu 37 6 28134312 28134312 + RNA SNP C C G TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 6 28134312 28134312 C G SNP ZNF192P1 ENST00000440790 human ensembl 74_37 1 known rna NULL NULL 0 0 0 0 no_errors 0 0 0 41 0 0 22 18 45 230 0 0.00 197 86 30.39 HLA-DMA 0 genome.wustl.edu 37 6 32920785 32920785 + Missense_Mutation SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 6 32920785 32920785 G A SNP HLA-DMA ENST00000374843 human ensembl 74_37 -1 known missense c.29 p.A10V 0.043 NULL pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom 0 no_errors 0 0 0 58 0 0 36 18 33.33 181 0 0.00 132 73 35.44 RFX6 0 genome.wustl.edu 37 6 117246707 117246707 + Missense_Mutation SNP G G C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G C G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 6 117246707 117246707 G C SNP RFX6 ENST00000332958 human ensembl 74_37 1 known missense c.1770 p.K590N 1 NULL pfam_DNA-bd_RFX 0 no_errors 0 0 0 34 0 0 17 3 15 154 0 0.00 113 42 27.10 UTRN 0 genome.wustl.edu 37 6 144744742 144744742 + Nonsense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 6 144744742 144744742 C T SNP UTRN ENST00000367545 human ensembl 74_37 1 known nonsense c.292 p.Q98* 1 pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pirsf_Dystrophin/utrophin,pfscan_CH-domain pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ 0 no_errors 0 0 0 46 0 0 48 5 9.43 282 0 0.00 262 15 5.42 MPLKIP 0 genome.wustl.edu 37 7 40173957 40173957 + Silent SNP G G A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 7 40173957 40173957 G A SNP MPLKIP ENST00000306984 human ensembl 74_37 -1 known silent c.210 p.G70 0.98 NULL NULL 0 no_errors 0 0 0 19 0 0 8 9 52.94 61 0 0.00 57 46 44.66 COBL 0 genome.wustl.edu 37 7 51287490 51287490 + Missense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 7 51287490 51287490 C T SNP COBL ENST00000395542 human ensembl 74_37 -1 known missense c.193 p.V65I 0.107 pfam_Cordon-bleu_ubiquitin_domain pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom 0 no_errors 0 0 0 37 0 0 18 9 33.33 60 0 0.00 69 25 26.60 GTF2I 0 genome.wustl.edu 37 7 74146970 74146970 + Missense_Mutation SNP T T A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 T T T A T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 7 74146970 74146970 T A SNP GTF2I ENST00000324896 human ensembl 74_37 1 known missense c.1271 p.L424H 1 pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I 0 no_errors 0 0 0 350 0 0 238 104 30.41 127 1 0.78 97 51 34.46 DGKI 0 genome.wustl.edu 37 7 137330273 137330273 + Missense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 7 137330273 137330273 C T SNP DGKI ENST00000288490 human ensembl 74_37 -1 known missense c.749 p.R250H 1 NULL pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom 0 no_errors rs148415050 C->T 0 59 0 0 33 13 28.26 139 0 0.00 104 59 36.20 NPR2 0 genome.wustl.edu 37 9 35808516 35808516 + Missense_Mutation SNP T T C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 9 35808516 35808516 T C SNP NPR2 ENST00000342694 human ensembl 74_37 1 known missense c.2723 p.I908T 1 pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase 0 no_errors rs369313283 T->C 0.9998,0.0001997 11 0 0 7 3 30 312 0 0.00 256 24 8.54 DMBT1 0 genome.wustl.edu 37 10 124390692 124390692 + Missense_Mutation SNP G G T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 10 124390692 124390692 G T SNP DMBT1 ENST00000338354 human ensembl 74_37 1 known missense c.5854 p.D1952Y 0.794 pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR 0 no_errors 0 0 0 49 1 2 40 21 34.43 177 0 0.00 151 59 28.10 PRR13 0 genome.wustl.edu 37 12 53837543 53837543 + Missense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 12 53837543 53837543 C T SNP PRR13 ENST00000429243 human ensembl 74_37 1 known missense c.388 p.H130Y 0.999 NULL NULL 0 no_errors 0 0 0 27 0 0 19 4 17.39 101 0 0.00 56 35 38.46 ACACB 0 genome.wustl.edu 37 12 109637257 109637257 + Missense_Mutation SNP A A C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 12 109637257 109637257 A C SNP ACACB ENST00000338432 human ensembl 74_37 1 known missense c.2678 p.D893A 1 superfamily_Single_hybrid_motif pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl 0 no_errors 0 0 0 37 0 0 16 8 33.33 171 0 0.00 142 57 28.64 SLITRK1 0 genome.wustl.edu 37 13 84454909 84454909 + Missense_Mutation SNP G G T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 13 84454909 84454909 G T SNP SLITRK1 ENST00000377084 human ensembl 74_37 -1 known missense c.734 p.T245N 1 smart_Cys-rich_flank_reg_C pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C 0 no_errors 0 0 0 81 0 0 61 16 20.78 195 0 0.00 156 29 15.68 ARHGEF40 0 genome.wustl.edu 37 14 21542584 21542584 + Missense_Mutation SNP A A G TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 14 21542584 21542584 A G SNP ARHGEF40 ENST00000298694 human ensembl 74_37 1 known missense c.695 p.N232S 0.978 NULL pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain 0 no_errors 0 0 0 39 0 0 19 7 26.92 79 0 0.00 76 36 32.14 N4BP1 0 genome.wustl.edu 37 16 48594885 48594885 + Missense_Mutation SNP T T C TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 16 48594885 48594885 T C SNP N4BP1 ENST00000262384 human ensembl 74_37 -1 known missense c.1669 p.N557D 0 NULL pfam_RNase_Zc3h12 0 no_errors 0 0 0 40 0 0 25 14 35.9 339 0 0.00 236 119 33.52 ONECUT3 0 genome.wustl.edu 37 19 1754836 1754836 + Nonsense_Mutation SNP C C A TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C A C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 19 1754836 1754836 C A SNP ONECUT3 ENST00000382349 human ensembl 74_37 1 known nonsense c.1175 p.S392* 1 pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT 0 no_errors 0 0 0 41 0 0 17 8 32 37 0 0.00 20 23 53.49 FCAR 0 genome.wustl.edu 37 19 55396876 55396876 + Silent SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 19 55396876 55396876 C T SNP FCAR ENST00000355524 human ensembl 74_37 1 known silent c.300 p.C100 0.011 smart_Ig_sub smart_Ig_sub 0 no_errors 0 0 0 35 0 0 13 6 31.58 139 0 0.00 128 61 32.28 NLRP5 0 genome.wustl.edu 37 19 56539531 56539531 + Silent SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 19 56539531 56539531 C T SNP NLRP5 ENST00000390649 human ensembl 74_37 1 known silent c.1932 p.D644 0 NULL pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN 0 no_errors 0 0 0 36 0 0 24 6 20 125 0 0.00 88 47 34.56 PMEPA1 0 genome.wustl.edu 37 20 56227302 56227302 + Missense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 20 56227302 56227302 C T SNP PMEPA1 ENST00000341744 human ensembl 74_37 -1 known missense c.671 p.R224H 1 NULL NULL 0 no_errors 0 0 0 32 0 0 20 6 23.08 17 0 0.00 16 4 20.00 CSF2RB 0 genome.wustl.edu 37 22 37334245 37334245 + Missense_Mutation SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 22 37334245 37334245 C T SNP CSF2RB ENST00000262825 human ensembl 74_37 1 known missense c.2413 p.R805C 0.001 pirsf_IL3_rcpt_beta pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 0 no_errors rs544020050 C->T 0.9996,0.0003994 76 0 0 52 10 16.13 146 0 0.00 183 13 6.63 C11orf45 0 genome.wustl.edu 37 11 128772397 128772398 + RNA INS - - GTCTGCAT TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 - - - GTCTGCAT - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 11 128772397 128772398 0 GTCTGCAT INS C11orf45 ENST00000530168 human ensembl 74_37 -1 known rna NULL NULL 0.000:0.000 0 0 0 no_errors 0 0 0 37 0 0 16 4 20 80 0 0.00 81 5 5.81 ENSG00000239012 0 genome.wustl.edu 37 1 142653748 142653748 + RNA SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 1 142653748 142653748 C T SNP ENSG00000239012 ENST00000459390 human ensembl 74_37 1 novel rna NULL NULL 0 0 0 0 no_errors 0 0 0 206 0 0 171 39 18.57 0 0 0.00 0 0 0.00 FBXO18 0 genome.wustl.edu 37 10 5932262 5932262 + RNA SNP C C T TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 10 5932262 5932262 C T SNP FBXO18 ENST00000462507 human ensembl 74_37 1 known rna NULL NULL 0.145 0 0 0 no_errors 0 0 0 44 0 0 26 4 13.33 4 0 0.00 3 0 0.00 ENSG00000221388 0 genome.wustl.edu 37 2 213628294 213628297 + RNA DEL TGTG TGTG - TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 TGTG TGTG Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 2 213628294 213628297 TGTG 0 DEL ENSG00000221388 ENST00000408461 human ensembl 74_37 -1 novel rna NULL NULL 0.000:0.000:0.000:0.000 0 0 0 no_errors 0 0 0 22 0 0 7 2 22.22 0 0 0.00 0 0 0.00 WASH3P 0 genome.wustl.edu 37 15 102506815 102506816 + RNA DEL CC CC - TCGA-XU-A92V-01A-11D-A423-09 TCGA-XU-A92V-10A-01D-A426-09 CC CC Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 07df341c-dadd-4806-8206-293b966635c8 b9db8a9c-bfe7-4157-81db-2b038358930f 15 102506815 102506816 CC 0 DEL WASH3P ENST00000559884 human ensembl 74_37 1 known rna NULL NULL 0.000:0.000 0 0 0 no_errors rs151176585 ACC->A 0 10 0 0 6 4 40 0 0 0.00 0 0 0.00