Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CENPI	0	genome.wustl.edu	37	X	100387419	100387419	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	X	100387419	100387419	T	G	SNP	CENPI	ENST00000372927	human	ensembl	74_37	1	known	missense	c.1444	p.F482V	1	pfam_CENP-I	pfam_CENP-I	0	no_errors	0	0	0	45	0	0	61	7	10.29	393	0	0.00	275	36	11.58
NAA10	0	genome.wustl.edu	37	X	153199411	153199411	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	X	153199411	153199411	T	C	SNP	NAA10	ENST00000464845	human	ensembl	74_37	-1	known	missense	c.164	p.Y55C	0.998	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	0	no_errors	0	0	0	45	0	0	37	6	13.64	216	0	0.00	164	24	12.70
CSMD2	0	genome.wustl.edu	37	1	34164425	34164425	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	1	34164425	34164425	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.3853	p.R1285W	1	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	0	no_errors	0	0	0	74	0	0	49	7	12.28	100	0	0.00	86	14	14.00
RAD54L	0	genome.wustl.edu	37	1	46726520	46726520	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	1	46726520	46726520	T	G	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	1	known	missense	c.599	p.L200R	1	pfam_SNF2_N,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	0	no_errors	0	0	0	40	0	0	16	8	33.33	130	0	0.00	97	12	11.01
APOB	0	genome.wustl.edu	37	2	21227522	21227522	+	Silent	SNP	A	A	G			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	2	21227522	21227522	A	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.11814	p.D3938	0.837	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	0	no_errors	0	0	0	96	0	0	87	9	9.38	347	0	0.00	254	15	5.58
TTN	0	genome.wustl.edu	37	2	179479385	179479385	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	2	179479385	179479385	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.41152	p.P13718T	1	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	0	no_errors	0	0	0	46	0	0	47	4	7.84	393	0	0.00	260	38	12.75
GFM1	0	genome.wustl.edu	37	3	158399829	158399829	+	Nonsense_Mutation	SNP	T	T	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	3	158399829	158399829	T	A	SNP	GFM1	ENST00000486715	human	ensembl	74_37	1	known	nonsense	c.1647	p.Y549*	1	pfam_Transl_elong_EFG/EF2_IV,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	0	no_errors	0	0	0	99	0	0	191	20	9.48	300	1	0.33	214	31	12.65
PCDHA13	0	genome.wustl.edu	37	5	140262573	140262573	+	Silent	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	5	140262573	140262573	G	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	1	known	silent	c.720	p.P240	0	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	0	no_errors	0	0	0	56	0	0	92	14	13.21	262	1	0.38	220	23	9.43
UTRN	0	genome.wustl.edu	37	6	145069474	145069474	+	Missense_Mutation	SNP	G	G	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	6	145069474	145069474	G	T	SNP	UTRN	ENST00000367545	human	ensembl	74_37	1	known	missense	c.8032	p.V2678L	0.007	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	0	no_errors	0	0	0	57	0	0	105	9	7.89	186	0	0.00	123	15	10.87
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	265	0	0	465	63	11.93	124	0	0.00	120	17	12.41
ZBED6CL	0	genome.wustl.edu	37	7	150028151	150028151	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	7	150028151	150028151	C	T	SNP	ZBED6CL	ENST00000343855	human	ensembl	74_37	1	known	nonsense	c.658	p.R220*	0.002	NULL	NULL	0	no_errors	0	0	0	43	0	0	48	9	15.79	203	0	0.00	123	19	13.38
ZNF658	0	genome.wustl.edu	37	9	40774255	40774255	+	Missense_Mutation	SNP	A	A	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	9	40774255	40774255	A	C	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	missense	c.1020	p.H340Q	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	0	no_errors	0	0	0	93	1	1.06	127	12	8.63	122	2	1.61	80	7	8.05
TUBBP5	0	genome.wustl.edu	37	9	141069223	141069223	+	RNA	SNP	T	T	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	9	141069223	141069223	T	C	SNP	TUBBP5	ENST00000503395	human	ensembl	74_37	1	known	rna	NULL	NULL	0.013	0	0	0	no_errors	0	0	0	51	1	1.92	78	6	7.14	22	0	0.00	28	2	6.67
KAZALD1	0	genome.wustl.edu	37	10	102827664	102827664	+	RNA	SNP	A	A	G			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	10	102827664	102827664	A	G	SNP	KAZALD1	ENST00000465807	human	ensembl	74_37	1	known	rna	NULL	NULL	0	0	0	0	no_errors	rs113092580	A->G	0	94	1	1.05	75	6	7.41	38	0	0.00	39	2	4.88
TECTA	0	genome.wustl.edu	37	11	120996317	120996317	+	Missense_Mutation	SNP	G	G	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	11	120996317	120996317	G	C	SNP	TECTA	ENST00000264037	human	ensembl	74_37	1	known	missense	c.1510	p.V504L	0.127	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	0	no_errors	0	0	0	20	0	0	11	3	21.43	37	0	0.00	25	2	7.41
RAB3IP	0	genome.wustl.edu	37	12	70195489	70195489	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	12	70195489	70195489	G	A	SNP	RAB3IP	ENST00000550536	human	ensembl	74_37	1	known	missense	c.1166	p.C389Y	1	NULL	pfam_Sec2p	0	no_errors	0	0	0	70	0	0	83	7	7.78	336	0	0.00	203	28	12.12
ELF1	0	genome.wustl.edu	37	13	41515206	41515206	+	Silent	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	13	41515206	41515206	C	T	SNP	ELF1	ENST00000239882	human	ensembl	74_37	-1	known	silent	c.1107	p.R369	1	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	0	no_errors	0	0	0	80	0	0	86	12	12.24	241	1	0.41	169	26	13.33
TRIM9	0	genome.wustl.edu	37	14	51561552	51561552	+	Missense_Mutation	SNP	T	T	G			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	14	51561552	51561552	T	G	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.106	p.N36H	1	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	0	no_errors	0	0	0	68	0	0	82	11	11.83	88	0	0.00	69	4	5.48
GTF3C1	0	genome.wustl.edu	37	16	27523094	27523094	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	16	27523094	27523094	T	C	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.1102	p.M368V	1	NULL	pfam_TFIIIC_Bblock-bd	0	no_errors	0	0	0	50	0	0	50	13	20.63	210	0	0.00	122	19	13.48
DNAH9	0	genome.wustl.edu	37	17	11700946	11700946	+	Missense_Mutation	SNP	C	C	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	17	11700946	11700946	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	1	known	missense	c.8256	p.S2752R	0.065	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	66	0	0	67	9	11.84	285	0	0.00	195	22	10.14
CATSPERD	0	genome.wustl.edu	37	19	5772832	5772832	+	Silent	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	19	5772832	5772832	C	T	SNP	CATSPERD	ENST00000381624	human	ensembl	74_37	1	known	silent	c.1797	p.D599	0	NULL	superfamily_WD40_repeat_dom	0	no_errors	0	0	0	99	0	0	72	9	11.11	157	0	0.00	148	24	13.95
NPHS1	0	genome.wustl.edu	37	19	36332649	36332649	+	Missense_Mutation	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	19	36332649	36332649	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.2783	p.S928L	0.897	pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	0	no_errors	0	0	0	39	0	0	64	6	8.57	236	0	0.00	166	20	10.75
TLDC2	0	genome.wustl.edu	37	20	35507540	35507540	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	20	35507540	35507540	C	T	SNP	TLDC2	ENST00000217320	human	ensembl	74_37	1	known	missense	c.286	p.R96W	1	pfam_TLDc,smart_TLDc	pfam_TLDc,smart_TLDc	0	no_errors	rs147062113	C->A,T	0.9996,.,0.0003994	43	0	0	49	6	10.91	60	0	0.00	56	6	9.68
APOL5	0	genome.wustl.edu	37	22	36122858	36122858	+	Missense_Mutation	SNP	T	T	C			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	22	36122858	36122858	T	C	SNP	APOL5	ENST00000249044	human	ensembl	74_37	1	known	missense	c.743	p.M248T	0.002	pfam_ApoL	pfam_ApoL	0	no_errors	0	0	0	34	0	0	38	3	7.32	240	0	0.00	219	13	5.60
MON1A	0	genome.wustl.edu	37	3	49948021	49948021	+	Missense_Mutation	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	3	49948021	49948021	C	T	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	missense	c.1201	p.D401N	1	pfam_Vacuolar_fusion_protein_MON1,prints_Vacuolar_fusion_protein_MON1	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	0	no_errors	0	0	0	12	0	0	14	4	22.22	8	0	0.00	5	0	0.00
MUC21	0	genome.wustl.edu	37	6	30955023	30955023	+	Silent	SNP	C	C	T			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	6	30955023	30955023	C	T	SNP	MUC21	ENST00000376296	human	ensembl	74_37	1	known	silent	c.1071	p.A357	0.029	NULL	NULL	0	no_errors	rs143942912	C->T	0	40	1	2.44	70	21	23.08	0	0	0.00	0	0	0.00
DNM1P47	0	genome.wustl.edu	37	15	102294758	102294758	+	RNA	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	15	102294758	102294758	G	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	1	known	rna	NULL	NULL	0.988	0	0	0	no_errors	rs370993817	G->A	0	16	0	0	19	4	16	0	0	0.00	2	0	0.00
MIR941-1	0	genome.wustl.edu	37	20	62551440	62551440	+	RNA	SNP	G	G	A			TCGA-XU-A92R-01A-11D-A423-09	TCGA-XU-A92R-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	465f7775-14ff-4b3d-9902-19d99c3b6305	e536e2ef-56dc-46e5-b544-172c23e92c33	20	62551440	62551440	G	A	SNP	MIR941-1	ENST00000401127	human	ensembl	74_37	1	known	rna	NULL	NULL	0.148	0	0	0	no_errors	0	0	0	74	0	0	75	8	9.64	0	0	0.00	0	0	0.00