Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error rsID rsID_ref_var_alleles CAF normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumor_var_reads tumor_vaf normal_ref_reads_val normal_var_reads_val normal_vaf_val tumor_ref_reads_val tumor_var_reads_val tumor_vaf_val MT-RNR2 0 genome.wustl.edu 37 MT 2778 2778 + RNA SNP T T C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 2778 2778 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 350 1 0.28 124 238 65.75 0 0 0.00 0 3 100.00 MT-RNR2 0 genome.wustl.edu 37 MT 2833 2833 + RNA SNP A A G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 2833 2833 A G SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors rs3928312 A->G 0 212 1 0.47 128 84 39.62 2 0 0.00 0 2 100.00 EIF1AX 0 genome.wustl.edu 37 X 20159748 20159748 + Missense_Mutation SNP T T C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 T T T C T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b X 20159748 20159748 T C SNP EIF1AX ENST00000379607 human ensembl 74_37 -1 known missense c.11 p.N4S 1 superfamily_NA-bd_OB-fold pfam_RNA-binding_domain_S1_IF1,superfamily_NA-bd_OB-fold,smart_TIF_eIF-1A,pfscan_RNA-binding_domain_S1_IF1,tigrfam_TIF_eIF-1A 0 no_errors 0 0 0 31 0 0 40 7 14.89 49 0 0.00 24 4 14.29 ENSG00000224066 0 genome.wustl.edu 37 1 32670768 32670768 + RNA SNP A A G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 1 32670768 32670768 A G SNP ENSG00000224066 ENST00000373604 human ensembl 74_37 -1 known rna NULL NULL 0 0 0 0 no_errors 0 0 0 34 0 0 44 8 15.38 71 0 0.00 40 8 16.67 NRAS 0 genome.wustl.edu 37 1 115258734 115258734 + Missense_Mutation SNP T T G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 T T T G T T Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 1 115258734 115258734 T G SNP NRAS ENST00000369535 human ensembl 74_37 -1 known missense c.48 p.K16N 1 pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom 0 no_errors 0 0 0 72 0 0 103 12 10.43 287 1 0.35 239 30 11.07 SLC29A1 0 genome.wustl.edu 37 6 44200586 44200586 + Missense_Mutation SNP C C G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 C C C G C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 6 44200586 44200586 C G SNP SLC29A1 ENST00000313248 human ensembl 74_37 1 known missense c.1339 p.R447G 0.699 pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt pfam_Eqnu_transpt,superfamily_MFS_dom_general_subst_transpt,prints_Eqnu_transpt,tigrfam_Eqnu_transpt 0 no_errors 0 0 0 48 0 0 74 12 13.95 46 0 0.00 56 3 5.08 RNF146 0 genome.wustl.edu 37 6 127608562 127608562 + Missense_Mutation SNP A A T TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A A T A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 6 127608562 127608562 A T SNP RNF146 ENST00000368314 human ensembl 74_37 1 known missense c.804 p.E268D 1 NULL pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING 0 no_errors 0 0 0 36 0 0 31 6 16.22 206 0 0.00 140 19 11.95 TNFRSF11B 0 genome.wustl.edu 37 8 119938903 119938903 + Missense_Mutation SNP G G A TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 8 119938903 119938903 G A SNP TNFRSF11B ENST00000297350 human ensembl 74_37 -1 known missense c.647 p.T216M 0.918 pirsf_TNFR_11B,superfamily_DEATH-like_dom pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg 0 no_errors 0 0 0 51 0 0 75 8 9.64 293 0 0.00 216 28 11.43 GABBR2 0 genome.wustl.edu 37 9 101133807 101133807 + Missense_Mutation SNP G G A TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 9 101133807 101133807 G A SNP GABBR2 ENST00000259455 human ensembl 74_37 -1 known missense c.1709 p.A570V 1 pfam_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B,pfscan_GPCR_3_C pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C 0 no_errors 0 0 0 62 0 0 58 5 7.94 208 0 0.00 164 12 6.78 CD163L1 0 genome.wustl.edu 37 12 7548911 7548911 + Silent SNP G G A TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 12 7548911 7548911 G A SNP CD163L1 ENST00000313599 human ensembl 74_37 -1 known silent c.1830 p.D610 0.001 pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR 0 no_errors rs140225151 G->A 0 23 1 4.17 31 8 20.51 145 0 0.00 108 5 4.42 MT-RNR2 0 genome.wustl.edu 37 MT 2455 2455 + RNA SNP T T C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 2455 2455 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 381 1 0.26 191 137 41.64 14 0 0.00 2 0 0.00 MT-RNR2 0 genome.wustl.edu 37 MT 3038 3038 + RNA SNP T T C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 3038 3038 T C SNP MT-RNR2 ENST00000387347 human ensembl 74_37 1 known rna NULL NULL NULL 0 0 0 no_errors 0 0 0 54 0 0 50 4 7.41 5 0 0.00 4 0 0.00 MT-CO1 0 genome.wustl.edu 37 MT 6444 6444 + Missense_Mutation SNP A A C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 6444 6444 A C SNP MT-CO1 ENST00000361624 human ensembl 74_37 1 known missense c.541 p.T181P NULL pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1 0 no_errors 0 0 0 22 0 0 3 6 66.67 3 0 0.00 4 0 0.00 MT-CO1 0 genome.wustl.edu 37 MT 7364 7364 + Silent SNP A A G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 7364 7364 A G SNP MT-CO1 ENST00000361624 human ensembl 74_37 1 known silent c.1461 p.E487 NULL superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1 0 no_errors rs376846215 A->G 0 110 0 0 80 11 12.09 6 0 0.00 0 0 0.00 MT-ATP6 0 genome.wustl.edu 37 MT 8577 8577 + Silent SNP A A C TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 8577 8577 A C SNP MT-ATP6 ENST00000361899 human ensembl 74_37 1 known silent c.51 p.L17 NULL tigrfam_ATPase_F0-cplx_asu pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu 0 no_errors 0 0 0 8 0 0 1 2 33.33 7 0 0.00 0 0 0.00 MT-ATP6 0 genome.wustl.edu 37 MT 8725 8725 + Missense_Mutation SNP A A G TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 A A Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b MT 8725 8725 A G SNP MT-ATP6 ENST00000361899 human ensembl 74_37 1 known missense c.199 p.T67A NULL pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu pfam_ATPase_F0-cplx_asu,superfamily_ATPase_F0-cplx_asu,prints_ATPase_F0-cplx_asu,tigrfam_ATPase_F0-cplx_asu 0 no_errors 0 0 0 17 0 0 6 2 25 9 0 0.00 1 0 0.00 KRTAP4-11 0 genome.wustl.edu 37 17 39274432 39274432 + Missense_Mutation SNP C C T TCGA-XM-AAZ1-01A-11D-A423-09 TCGA-XM-AAZ1-10A-01D-A426-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq 6d3d8395-059b-4af7-a1cc-7b79c3030a56 439f8e89-3586-4a4f-bb80-f161de88804b 17 39274432 39274432 C T SNP KRTAP4-11 ENST00000391413 human ensembl 74_37 -1 known missense c.136 p.V46M 0 pfam_Keratin-assoc pfam_Keratin-assoc 0 no_errors 0 0 0 115 0 0 132 10 7.04 2 0 0.00 2 0 0.00