Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CTPS2	0	genome.wustl.edu	37	X	16711302	16711302	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	X	16711302	16711302	C	T	SNP	CTPS2	ENST00000359276	human	ensembl	74_37	-1	known	missense	c.601	p.V201I	1	pfam_CTP_synthase_N,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	0	no_errors	0	0	0	67	0	0	69	17	19.77	230	0	0.00	124	31	20.00
DMD	0	genome.wustl.edu	37	X	32482815	32482815	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	X	32482815	32482815	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.3164	p.N1055T	1	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	0	no_errors	0	0	0	69	0	0	57	46	44.66	364	0	0.00	147	87	37.18
CCDC22	0	genome.wustl.edu	37	X	49106160	49106160	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	X	49106160	49106160	C	T	SNP	CCDC22	ENST00000376227	human	ensembl	74_37	1	known	missense	c.1744	p.R582W	0.998	pfam_DUF812	pfam_DUF812	0	no_errors	rs201021614	C->A,T	0	121	0	0	24	15	38.46	63	0	0.00	31	9	21.95
PAX7	0	genome.wustl.edu	37	1	19027246	19027246	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	1	19027246	19027246	G	A	SNP	PAX7	ENST00000375375	human	ensembl	74_37	1	known	missense	c.886	p.G296S	0.999	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	0	no_errors	rs370742910	G->A	0	32	0	0	21	12	36.36	83	0	0.00	40	20	33.33
UBR4	0	genome.wustl.edu	37	1	19470510	19470510	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	1	19470510	19470510	T	C	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8143	p.T2715A	1	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	0	no_errors	0	0	0	71	1	1.37	94	40	29.85	232	0	0.00	135	54	28.57
NPHS2	0	genome.wustl.edu	37	1	179528897	179528897	+	Splice_Site	SNP	C	C	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	1	179528897	179528897	C	A	SNP	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	splice_site	c.452-1	e4-1	1	0	0	0	no_errors	0	0	0	24	0	0	20	7	25.93	204	0	0.00	107	7	6.14
RYR2	0	genome.wustl.edu	37	1	237777980	237777980	+	Missense_Mutation	SNP	T	T	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	1	237777980	237777980	T	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	1	known	missense	c.5546	p.F1849Y	1	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	0	no_errors	0	0	0	28	0	0	15	21	58.33	129	0	0.00	59	32	34.78
ADAM23	0	genome.wustl.edu	37	2	207459556	207459556	+	Missense_Mutation	SNP	G	G	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	2	207459556	207459556	G	A	SNP	ADAM23	ENST00000264377	human	ensembl	74_37	1	known	missense	c.2174	p.C725Y	1	smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	0	no_errors	0	0	0	70	0	0	51	33	39.29	232	0	0.00	81	56	40.58
SCARB2	0	genome.wustl.edu	37	4	77100714	77100714	+	Missense_Mutation	SNP	C	C	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	4	77100714	77100714	C	A	SNP	SCARB2	ENST00000264896	human	ensembl	74_37	-1	known	missense	c.568	p.V190F	0	pfam_CD36,prints_LimpII	pfam_CD36,superfamily_NA-bd_OB-fold,prints_LimpII,prints_CD36,prints_CD36_antigen	0	no_errors	0	0	0	53	0	0	83	44	34.38	345	0	0.00	126	81	39.13
TAF9	0	genome.wustl.edu	37	5	68665316	68665316	+	Missense_Mutation	SNP	A	A	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	5	68665316	68665316	A	C	SNP	TAF9	ENST00000380822	human	ensembl	74_37	-1	known	missense	c.2	p.M1R	1	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase	0	no_errors	0	0	0	17	0	0	11	5	31.25	54	0	0.00	33	16	32.65
LOC202181	0	genome.wustl.edu	37	5	177059218	177059218	+	RNA	SNP	G	G	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	5	177059218	177059218	G	A	SNP	LOC202181	ENST00000515045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.513	0	0	0	no_errors	0	0	0	61	0	0	40	11	21.57	69	0	0.00	39	9	18.75
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	442	0	0	637	248	28.02	197	0	0.00	116	48	29.27
KHDRBS3	0	genome.wustl.edu	37	8	136554927	136554927	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	8	136554927	136554927	C	T	SNP	KHDRBS3	ENST00000355849	human	ensembl	74_37	1	known	missense	c.238	p.R80C	0.998	smart_KH_dom	smart_KH_dom	0	no_errors	0	0	0	69	0	0	72	51	41.46	355	0	0.00	124	93	42.66
RALGPS1	0	genome.wustl.edu	37	9	129815132	129815132	+	Silent	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	9	129815132	129815132	C	T	SNP	RALGPS1	ENST00000259351	human	ensembl	74_37	1	known	silent	c.397	p.L133	1	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	0	no_errors	rs150464808	C->T	0	78	0	0	77	51	39.53	330	2	0.60	130	98	42.79
ZNF438	0	genome.wustl.edu	37	10	31138511	31138511	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	10	31138511	31138511	T	C	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	missense	c.823	p.T275A	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	79	0	0	87	45	34.09	325	0	0.00	105	83	44.15
PPFIBP1	0	genome.wustl.edu	37	12	27835371	27835371	+	Nonsense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	12	27835371	27835371	C	T	SNP	PPFIBP1	ENST00000318304	human	ensembl	74_37	1	known	nonsense	c.2116	p.Q706*	1	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	0	no_errors	0	0	0	67	0	0	100	66	39.76	344	0	0.00	122	96	44.04
SLC22A17	0	genome.wustl.edu	37	14	23816667	23816667	+	Splice_Site	SNP	A	A	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	14	23816667	23816667	A	C	SNP	SLC22A17	ENST00000206544	human	ensembl	74_37	-1	known	splice_site	c.1216+2	e7+2	0.988	0	0	0	no_errors	0	0	0	41	0	0	18	10	35.71	129	0	0.00	69	32	31.37
MAP2K1	0	genome.wustl.edu	37	15	66727443	66727443	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	15	66727443	66727443	T	G	SNP	MAP2K1	ENST00000307102	human	ensembl	74_37	1	known	missense	c.159	p.F53L	0.995	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	0	no_errors	0	0	0	41	0	0	22	38	63.33	182	0	0.00	56	83	59.71
AMDHD2	0	genome.wustl.edu	37	16	2577812	2577812	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	16	2577812	2577812	C	T	SNP	AMDHD2	ENST00000413459	human	ensembl	74_37	1	known	missense	c.454	p.R152W	1	superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,pfam_Amidohydro_3,superfamily_Metal-dep_hydrolase_composite	0	no_errors	0	0	0	14	0	0	2	9	81.82	70	0	0.00	26	13	33.33
FAM65A	0	genome.wustl.edu	37	16	67575618	67575618	+	Missense_Mutation	SNP	C	C	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	16	67575618	67575618	C	T	SNP	FAM65A	ENST00000422602	human	ensembl	74_37	1	known	missense	c.1073	p.T358I	1	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	0	no_errors	0	0	0	33	0	0	20	11	35.48	175	0	0.00	84	44	34.38
SNORD3B-1	0	genome.wustl.edu	37	17	18965422	18965422	+	RNA	SNP	G	G	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	17	18965422	18965422	G	A	SNP	SNORD3B-1	ENST00000363359	human	ensembl	74_37	1	known	rna	NULL	NULL	0.075	0	0	0	no_errors	rs200752056	G->A	0	41	0	0	27	6	18.18	32	0	0.00	22	7	24.14
KRT26	0	genome.wustl.edu	37	17	38927440	38927440	+	Missense_Mutation	SNP	T	T	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	17	38927440	38927440	T	C	SNP	KRT26	ENST00000335552	human	ensembl	74_37	-1	known	missense	c.490	p.N164D	1	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	0	no_errors	0	0	0	127	0	0	119	77	39.29	191	0	0.00	96	50	34.25
RLN3	0	genome.wustl.edu	37	19	14141521	14141521	+	Splice_Site	SNP	G	G	A			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	19	14141521	14141521	G	A	SNP	RLN3	ENST00000431365	human	ensembl	74_37	1	known	splice_site	c.191-1	e2-1	0.987	0	0	0	no_errors	0	0	0	43	0	0	21	9	30	92	0	0.00	44	11	19.64
PINLYP	0	genome.wustl.edu	37	19	44085496	44085496	+	Missense_Mutation	SNP	G	G	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	19	44085496	44085496	G	C	SNP	PINLYP	ENST00000562255	human	ensembl	74_37	1	known	missense	c.56	p.C19S	1	NULL	pfam_LY6_UPAR	0	no_errors	0	0	0	47	0	0	28	13	31.71	189	0	0.00	98	42	29.58
BDNF-AS	0	genome.wustl.edu	37	11	27681170	27681171	+	RNA	INS	-	-	TC			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	-	-	-	TC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	11	27681170	27681171	0	TC	INS	BDNF-AS	ENST00000530313	human	ensembl	74_37	1	known	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	0	0	0	57	0	0	67	10	12.99	145	0	0.00	95	19	16.67
ABCD4	0	genome.wustl.edu	37	14	74759934	74759935	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	-	-	-	GC	-	-	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	14	74759934	74759935	0	GC	INS	ABCD4	ENST00000356924	human	ensembl	74_37	-1	known	frame_shift_ins	c.737_736	p.H246fs	1.000:1.000	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	0	no_errors	0	0	0	34	0	0	23	11	32.35	125	0	0.00	64	21	24.71
SETMAR	0	genome.wustl.edu	37	3	4358878	4358878	+	Missense_Mutation	SNP	T	T	G			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	3	4358878	4358878	T	G	SNP	SETMAR	ENST00000358065	human	ensembl	74_37	1	known	missense	c.2003	p.L668R	0.939	NULL	pfam_Transposase_1,pfam_SET_dom,pfam_Pre-SET_dom,pfam_Transposase_Tc1-like,pfam_Transposase_14,superfamily_Homeodomain-like,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	0	no_errors	0	0	0	30	0	0	35	23	39.66	0	0	0.00	0	0	0.00
DSPP	0	genome.wustl.edu	37	4	88537216	88537216	+	Silent	SNP	T	T	C			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	4	88537216	88537216	T	C	SNP	DSPP	ENST00000282478	human	ensembl	74_37	1	known	silent	c.3402	p.D1134	0.798	NULL	NULL	0	no_errors	0	0	0	17	0	0	40	10	19.61	5	0	0.00	1	0	0.00
DNAH5	0	genome.wustl.edu	37	5	13810293	13810293	+	Missense_Mutation	SNP	G	G	T			TCGA-XM-A8RF-01A-11D-A423-09	TCGA-XM-A8RF-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2671e3eb-3719-4b12-9cda-fd4f03999e93	87fd64b3-7a52-4876-ab3d-ca465f60355b	5	13810293	13810293	G	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.7484	p.A2495E	0.309	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	37	0	0	46	4	7.84	11	0	0.00	10	0	0.00