Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
CTNNA1	0	genome.wustl.edu	37	5	138163321	138163321	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DE-01A-11D-A423-09	TCGA-X7-A8DE-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	5f544715-5a3a-4997-9151-5337c216d8ab	b7884a46-d16c-4a00-94f0-fa869d26c7be	5	138163321	138163321	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	1	known	missense	c.976	p.R326C	0.997	pfam_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	0	no_errors	0	0	0	37	0	0	15	3	16.67	204	0	0.00	101	13	11.30
LINC00265	0	genome.wustl.edu	37	7	39832528	39832528	+	RNA	SNP	A	A	G			TCGA-X7-A8DE-01A-11D-A423-09	TCGA-X7-A8DE-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5f544715-5a3a-4997-9151-5337c216d8ab	b7884a46-d16c-4a00-94f0-fa869d26c7be	7	39832528	39832528	A	G	SNP	LINC00265	ENST00000340510	human	ensembl	74_37	1	known	rna	NULL	NULL	0.594	0	0	0	no_errors	0	0	0	44	1	2.22	42	4	8.7	19	0	0.00	2	0	0.00
CBWD3	0	genome.wustl.edu	37	9	70912543	70912543	+	Missense_Mutation	SNP	A	A	T			TCGA-X7-A8DE-01A-11D-A423-09	TCGA-X7-A8DE-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5f544715-5a3a-4997-9151-5337c216d8ab	b7884a46-d16c-4a00-94f0-fa869d26c7be	9	70912543	70912543	A	T	SNP	CBWD3	ENST00000360171	human	ensembl	74_37	1	known	missense	c.864	p.E288D	0.9	pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	0	no_errors	0	0	0	60	1	1.64	64	8	11.11	0	0	0.00	0	0	0.00
GTF2I	0	genome.wustl.edu	37	7	74149837	74149840	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-X7-A8DE-01A-11D-A423-09	TCGA-X7-A8DE-10A-01D-A426-09	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5f544715-5a3a-4997-9151-5337c216d8ab	b7884a46-d16c-4a00-94f0-fa869d26c7be	7	74149837	74149840	AAGA	0	DEL	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	frame_shift_del	c.1398_1401	p.K468fs	0.824:0.950:0.992:0.989	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	58	0	0	72	8	10	17	0	0.00	7	0	0.00
MUC12	0	genome.wustl.edu	37	7	100641727	100641728	+	In_Frame_Ins	INS	-	-	TGA			TCGA-X7-A8DE-01A-11D-A423-09	TCGA-X7-A8DE-10A-01D-A426-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	5f544715-5a3a-4997-9151-5337c216d8ab	b7884a46-d16c-4a00-94f0-fa869d26c7be	7	100641727	100641728	0	TGA	INS	MUC12	ENST00000536621	human	ensembl	74_37	1	known	in_frame_ins	c.7883_7884	p.2630in_frame_insE	0.002:0.002	NULL	pfam_SEA_dom	0	no_errors	0	0	0	22	0	0	14	3	17.65	10	0	0.00	3	0	0.00