Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
PTPRD	0	genome.wustl.edu	37	9	8317920	8317920	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	9	8317920	8317920	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.5693	p.R1898H	1	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	0	no_errors	rs200610422	C->T	0.9998,0.0001997	42	0	0	52	5	8.77	251	0	0.00	196	13	6.19
NBPF9	0	genome.wustl.edu	37	1	144823868	144823868	+	Missense_Mutation	SNP	T	T	G			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	1	144823868	144823868	T	G	SNP	NBPF9	ENST00000281815	human	ensembl	74_37	1	known	missense	c.190	p.Y64D	0.001	pfam_NBPF_dom	pfam_NBPF_dom	0	no_errors	rs61807127	T->G	0	33	1	2.94	46	7	13.21	4	0	0.00	0	0	0.00
PCDHA9	0	genome.wustl.edu	37	5	140229771	140229771	+	Missense_Mutation	SNP	C	C	T			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	5	140229771	140229771	C	T	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	1	known	missense	c.1691	p.A564V	0	superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	0	no_errors	0	0	0	43	0	0	35	4	10.26	8	0	0.00	5	0	0.00
USP31	0	genome.wustl.edu	37	16	23160099	23160099	+	Missense_Mutation	SNP	G	G	A			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	16	23160099	23160099	G	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	missense	c.493	p.R165W	0.039	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	0	no_errors	0	0	0	31	0	0	39	5	11.36	11	0	0.00	6	0	0.00
ZFHX3	0	genome.wustl.edu	37	16	73092895	73092895	+	RNA	SNP	C	C	T			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	16	73092895	73092895	C	T	SNP	ZFHX3	ENST00000558842	human	ensembl	74_37	-1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	24	0	0	9	4	30.77	17	0	0.00	7	0	0.00
POTEH-AS1	0	genome.wustl.edu	37	22	16277955	16277955	+	RNA	SNP	A	A	G			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	22	16277955	16277955	A	G	SNP	POTEH-AS1	ENST00000422014	human	ensembl	74_37	1	known	rna	NULL	NULL	0.004	0	0	0	no_errors	rs4819442	A->G	0	37	1	2.63	30	5	14.29	0	0	0.00	0	0	0.00
FNIP2	0	genome.wustl.edu	37	4	159690435	159690435	+	Frame_Shift_Del	DEL	C	C	-			TCGA-X7-A8DD-01A-11D-A423-09	TCGA-X7-A8DD-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b7b649e2-9c4c-49a6-9c6a-ef46dfd56722	68688c74-b37d-43ac-a683-773db479d1fb	4	159690435	159690435	C	0	DEL	FNIP2	ENST00000264433	human	ensembl	74_37	1	known	frame_shift_del	c.71	p.Q25fs	0.994	NULL	NULL	0	no_errors	0	0	0	8	0	0	4	2	33.33	17	0	0.00	10	0	0.00