Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
NHS	0	genome.wustl.edu	37	X	17745002	17745002	+	Missense_Mutation	SNP	C	C	A			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	X	17745002	17745002	C	A	SNP	NHS	ENST00000380060	human	ensembl	74_37	1	known	missense	c.2713	p.Q905K	0.986	NULL	NULL	0	no_errors	0	0	0	54	0	0	45	12	21.05	301	1	0.33	222	51	18.68
SYTL5	0	genome.wustl.edu	37	X	37979640	37979640	+	Silent	SNP	A	A	G			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	X	37979640	37979640	A	G	SNP	SYTL5	ENST00000456733	human	ensembl	74_37	1	known	silent	c.1692	p.Q564	0.487	NULL	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	0	no_errors	0	0	0	86	0	0	67	21	23.86	381	0	0.00	270	53	16.41
CNST	0	genome.wustl.edu	37	1	246810860	246810860	+	Missense_Mutation	SNP	T	T	C			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	1	246810860	246810860	T	C	SNP	CNST	ENST00000366513	human	ensembl	74_37	1	known	missense	c.1357	p.S453P	0.021	NULL	NULL	0	no_errors	0	0	0	25	0	0	37	11	22.92	236	0	0.00	236	30	11.28
ZKSCAN8	0	genome.wustl.edu	37	6	28116370	28116370	+	Missense_Mutation	SNP	C	C	T			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	6	28116370	28116370	C	T	SNP	ZKSCAN8	ENST00000330236	human	ensembl	74_37	1	known	missense	c.185	p.T62I	0.972	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	0	no_errors	0	0	0	44	0	0	15	7	30.43	120	0	0.00	67	8	10.67
ZNF311	0	genome.wustl.edu	37	6	28971674	28971674	+	Splice_Site	SNP	C	C	T			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	6	28971674	28971674	C	T	SNP	ZNF311	ENST00000483450	human	ensembl	74_37	-1	known	splice_site	c.NULL	NULL	0.127	0	0	0	no_errors	0	0	0	55	0	0	26	7	21.21	341	0	0.00	165	53	24.31
OR4C3	0	genome.wustl.edu	37	11	48347418	48347418	+	Missense_Mutation	SNP	C	C	T			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	11	48347418	48347418	C	T	SNP	OR4C3	ENST00000319856	human	ensembl	74_37	1	known	missense	c.926	p.P309L	0.959	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	61	0	0	62	5	7.46	353	0	0.00	401	20	4.75
NCAPD2	0	genome.wustl.edu	37	12	6640225	6640225	+	Missense_Mutation	SNP	A	A	G			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	12	6640225	6640225	A	G	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	1	known	missense	c.4103	p.D1368G	1	pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	0	no_errors	0	0	0	51	0	0	39	8	17.02	260	0	0.00	111	39	26.00
CDCA3	0	genome.wustl.edu	37	12	6959688	6959688	+	Missense_Mutation	SNP	C	C	A			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	12	6959688	6959688	C	A	SNP	CDCA3	ENST00000538862	human	ensembl	74_37	-1	known	missense	c.193	p.D65Y	0.998	NULL	NULL	0	no_errors	0	0	0	40	0	0	26	15	36.59	253	0	0.00	172	33	16.10
PDZRN4	0	genome.wustl.edu	37	12	41900409	41900409	+	Missense_Mutation	SNP	C	C	G			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	12	41900409	41900409	C	G	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	1	known	missense	c.995	p.A332G	1	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	0	no_errors	0	0	0	51	0	0	45	13	22.41	150	2	1.32	135	34	20.12
FAM194B	0	genome.wustl.edu	37	13	46161310	46161310	+	Silent	SNP	G	G	A			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	13	46161310	46161310	G	A	SNP	FAM194B	ENST00000298738	human	ensembl	74_37	-1	known	silent	c.744	p.F248	0	NULL	NULL	0	no_errors	rs564144924	G->A	0.9996,0.0003994	31	0	0	29	3	9.38	188	1	0.53	158	15	8.67
EVL	0	genome.wustl.edu	37	14	100563849	100563849	+	Missense_Mutation	SNP	T	T	C			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	14	100563849	100563849	T	C	SNP	EVL	ENST00000392920	human	ensembl	74_37	1	known	missense	c.212	p.L71P	1	pfam_WH1/EVH1,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	0	no_errors	0	0	0	81	0	0	50	11	18.03	232	0	0.00	179	35	16.36
PSTPIP1	0	genome.wustl.edu	37	15	77310520	77310520	+	Missense_Mutation	SNP	A	A	T			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	15	77310520	77310520	A	T	SNP	PSTPIP1	ENST00000559785	human	ensembl	74_37	1	known	missense	c.263	p.E88V	1	pfam_FCH_dom,superfamily_Prismane-like,smart_FCH_dom,pfscan_FCH_dom	pfam_FCH_dom,superfamily_Prismane-like,smart_FCH_dom,pfscan_FCH_dom	0	no_errors	0	0	0	28	0	0	27	4	12.9	82	0	0.00	61	5	7.58
AATF	0	genome.wustl.edu	37	17	35413969	35413969	+	RNA	SNP	G	G	A			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	17	35413969	35413969	G	A	SNP	AATF	ENST00000587618	human	ensembl	74_37	1	putative	rna	NULL	NULL	0.003	0	0	0	no_errors	rs375247205	G->A	0	41	0	0	29	9	23.68	127	2	1.55	102	25	19.69
UPF1	0	genome.wustl.edu	37	19	18968185	18968185	+	Silent	SNP	G	G	A			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	19	18968185	18968185	G	A	SNP	UPF1	ENST00000599848	human	ensembl	74_37	1	known	silent	c.2058	p.A686	0.905	superfamily_P-loop_NTPase	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	0	no_errors	rs369728050	G->A	0	22	0	0	20	3	13.04	65	0	0.00	29	2	6.45
IRF3	0	genome.wustl.edu	37	19	50166738	50166738	+	Missense_Mutation	SNP	C	C	T			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	19	50166738	50166738	C	T	SNP	IRF3	ENST00000309877	human	ensembl	74_37	-1	known	missense	c.199	p.G67R	0.308	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	0	no_errors	0	0	0	28	0	0	21	2	8.7	223	0	0.00	150	35	18.92
ENSG00000248015	0	genome.wustl.edu	37	19	1395488	1395490	+	RNA	DEL	CGC	CGC	-			TCGA-5G-A9ZZ-01A-31D-A423-09	TCGA-5G-A9ZZ-10A-01D-A426-09	CGC	CGC	CGC	-	CGC	CGC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	42aead9b-0670-43e8-affb-121e0357816b	a0f552f8-ec94-4296-8ce2-7d902e1d837d	19	1395488	1395490	CGC	0	DEL	ENSG00000248015	ENST00000501448	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.014:0.013	0	0	0	no_errors	0	0	0	14	0	0	4	2	33.33	30	0	0.00	25	2	7.41