Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-RNR2	0	genome.wustl.edu	37	MT	2833	2833	+	RNA	SNP	A	A	G			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	MT	2833	2833	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	1	known	rna	NULL	NULL	NULL	0	0	0	no_errors	rs3928312	A->G	0	360	1	0.28	43	322	88.22	0	0	0.00	0	2	100.00
SDCCAG8	0	genome.wustl.edu	37	1	243480113	243480113	+	Missense_Mutation	SNP	C	C	A			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	1	243480113	243480113	C	A	SNP	SDCCAG8	ENST00000366541	human	ensembl	74_37	1	known	missense	c.986	p.T329K	0.159	NULL	NULL	0	no_errors	0	0	0	74	0	0	43	23	34.33	104	0	0.00	68	60	46.88
APOB	0	genome.wustl.edu	37	2	21231626	21231626	+	Missense_Mutation	SNP	C	C	G			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	2	21231626	21231626	C	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.8114	p.R2705T	0	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	0	no_errors	0	0	0	56	0	0	29	31	51.67	177	0	0.00	127	49	27.84
COL6A6	0	genome.wustl.edu	37	3	130313158	130313158	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	3	130313158	130313158	C	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	1	known	missense	c.4504	p.R1502C	0.721	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	0	no_errors	0	0	0	87	0	0	60	44	42.31	119	0	0.00	73	49	40.16
TNIP2	0	genome.wustl.edu	37	4	2749564	2749564	+	Missense_Mutation	SNP	T	T	G			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	4	2749564	2749564	T	G	SNP	TNIP2	ENST00000315423	human	ensembl	74_37	-1	known	missense	c.385	p.S129R	0.539	NULL	pfam_EABR	0	no_errors	0	0	0	35	0	0	31	4	11.43	72	0	0.00	69	3	4.17
TMEM63B	0	genome.wustl.edu	37	6	44107320	44107320	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	6	44107320	44107320	C	T	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	1	known	missense	c.524	p.P175L	1	NULL	pfam_DUF221	0	no_errors	0	0	0	56	0	0	26	10	27.78	91	0	0.00	56	39	41.05
FKBP1C	0	genome.wustl.edu	37	6	63921516	63921516	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	6	63921516	63921516	C	T	SNP	FKBP1C	ENST00000370659	human	ensembl	74_37	1	known	missense	c.55	p.R19C	0	pfam_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	0	no_errors	0	0	0	57	1	1.72	31	13	29.55	25	0	0.00	14	13	48.15
GTF2I	0	genome.wustl.edu	37	7	74146970	74146970	+	Missense_Mutation	SNP	T	T	A			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	7	74146970	74146970	T	A	SNP	GTF2I	ENST00000324896	human	ensembl	74_37	1	known	missense	c.1271	p.L424H	1	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	0	no_errors	0	0	0	351	1	0.28	230	145	38.56	80	0	0.00	85	43	33.59
TMEM139	0	genome.wustl.edu	37	7	142983162	142983162	+	Missense_Mutation	SNP	G	G	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	7	142983162	142983162	G	T	SNP	TMEM139	ENST00000359333	human	ensembl	74_37	1	known	missense	c.112	p.V38F	0.004	NULL	NULL	0	no_errors	0	0	0	77	0	0	43	29	40.28	195	0	0.00	102	68	39.77
UNC13B	0	genome.wustl.edu	37	9	35377653	35377653	+	Missense_Mutation	SNP	G	G	C			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	9	35377653	35377653	G	C	SNP	UNC13B	ENST00000378496	human	ensembl	74_37	1	known	missense	c.1777	p.D593H	1	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	0	no_errors	0	0	0	47	0	0	21	7	25	105	0	0.00	53	38	41.30
C10orf71	0	genome.wustl.edu	37	10	50532900	50532900	+	Silent	SNP	G	G	A			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	10	50532900	50532900	G	A	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	1	known	silent	c.2310	p.K770	0.725	NULL	NULL	0	no_errors	0	0	0	49	0	0	18	11	37.93	109	0	0.00	70	23	24.47
DLG5	0	genome.wustl.edu	37	10	79614094	79614094	+	Missense_Mutation	SNP	G	G	C			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	10	79614094	79614094	G	C	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.571	p.L191V	1	pfam_DUF622	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	0	no_errors	0	0	0	28	0	0	16	12	41.38	72	0	0.00	46	20	30.30
RIN1	0	genome.wustl.edu	37	11	66101499	66101499	+	Silent	SNP	T	T	C			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	11	66101499	66101499	T	C	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	silent	c.1482	p.Q494	0.998	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	0	no_errors	0	0	0	101	0	0	46	10	17.86	60	0	0.00	48	19	28.36
ARHGAP5	0	genome.wustl.edu	37	14	32563307	32563307	+	Missense_Mutation	SNP	T	T	G			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	14	32563307	32563307	T	G	SNP	ARHGAP5	ENST00000345122	human	ensembl	74_37	1	known	missense	c.3432	p.S1144R	0.995	NULL	pfam_RhoGAP_dom,pfam_FF_domain,pfam_Small_GTPase,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom,prints_Small_GTPase	0	no_errors	0	0	0	77	0	0	56	31	35.63	206	0	0.00	153	78	33.77
ANKRD20A8P	0	genome.wustl.edu	37	2	95480630	95480630	+	RNA	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	2	95480630	95480630	C	T	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0	0	0	0	no_errors	rs200849671	C->T	0	17	0	0	30	8	21.05	0	0	0.00	0	0	0.00
GLUD1	0	genome.wustl.edu	37	10	88854216	88854216	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	10	88854216	88854216	C	T	SNP	GLUD1	ENST00000277865	human	ensembl	74_37	-1	known	missense	c.311	p.G104D	1	NULL	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	0	no_errors	0	0	0	71	0	0	50	4	7.41	15	0	0.00	6	0	0.00
PRB2	0	genome.wustl.edu	37	12	11546677	11546677	+	Missense_Mutation	SNP	C	C	T			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	12	11546677	11546677	C	T	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	missense	c.335	p.R112Q	0.023	NULL	NULL	0	no_errors	rs201144571	C->T	0	135	1	0.7	236	29	10.82	0	0	0.00	0	0	0.00
TPRXL	0	genome.wustl.edu	37	3	14106280	14106285	+	In_Frame_Del	DEL	CCCCGT	CCCCGT	-			TCGA-4X-A9FA-01A-11D-A423-09	TCGA-4X-A9FA-10A-01D-A426-09	CCCCGT	CCCCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3ee013e0-9818-421d-bce1-38fc71f63ad9	c4869f46-818c-485f-aa2b-690e81859d38	3	14106280	14106285	CCCCGT	0	DEL	TPRXL	ENST00000326972	human	ensembl	74_37	1	known	in_frame_del	c.604_609	p.PR202in_frame_del	0.896:0.880:0.863:0.844:0.843:0.841	NULL	NULL	0	no_errors	0	0	0	18	0	0	8	4	33.33	8	0	0.00	5	0	0.00