Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
ANKRD36	0	genome.wustl.edu	37	2	97830036	97830036	+	Silent	SNP	G	G	A			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	2	97830036	97830036	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	1	known	silent	c.1446	p.P482	0	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	0	no_errors	rs202135818	G->A	0	68	1	1.45	102	8	7.27	114	1	0.86	110	5	4.31
SCUBE3	0	genome.wustl.edu	37	6	35199578	35199578	+	Silent	SNP	C	C	T			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	6	35199578	35199578	C	T	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	1	known	silent	c.411	p.H137	1	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	0	no_errors	0	0	0	40	0	0	40	4	9.09	70	1	1.41	59	3	4.84
ENSG00000269888	0	genome.wustl.edu	37	3	161146937	161146937	+	RNA	SNP	G	G	A			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	3	161146937	161146937	G	A	SNP	ENSG00000269888	ENST00000602890	human	ensembl	74_37	1	known	rna	NULL	NULL	1	0	0	0	no_errors	0	0	0	14	0	0	53	6	10.17	0	0	0.00	0	0	0.00
GPR125	0	genome.wustl.edu	37	4	22517362	22517362	+	Silent	SNP	A	A	G			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	4	22517362	22517362	A	G	SNP	GPR125	ENST00000334304	human	ensembl	74_37	-1	known	silent	c.46	p.L16	0.99	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_GPCR_2_extracellular_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom	0	no_errors	0	0	0	8	0	0	22	4	15.38	4	0	0.00	3	0	0.00
ENSG00000221504	0	genome.wustl.edu	37	19	32417530	32417530	+	RNA	SNP	T	T	C			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	19	32417530	32417530	T	C	SNP	ENSG00000221504	ENST00000408577	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.106	0	0	0	no_errors	rs61243180	T->C	0	25	0	0	30	9	23.08	0	0	0.00	0	0	0.00
CAPNS1	0	genome.wustl.edu	37	19	36632025	36632027	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-4V-A9QT-01A-11D-A423-09	TCGA-4V-A9QT-10A-01D-A426-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f2634e39-99e9-4922-9887-b6339973887e	04c8a313-a212-4711-bf41-f0001686e75d	19	36632025	36632027	GGC	0	DEL	CAPNS1	ENST00000588780	human	ensembl	74_37	1	known	in_frame_del	c.112_114	p.G41in_frame_del	0.907:0.986:0.987	NULL	pfscan_EF_hand_dom	0	no_errors	0	0	0	31	0	0	37	5	11.9	2	0	0.00	5	0	0.00