Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
UHMK1	0	genome.wustl.edu	37	1	162469895	162469895	+	Missense_Mutation	SNP	G	G	T			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	1	162469895	162469895	G	T	SNP	UHMK1	ENST00000489294	human	ensembl	74_37	1	known	missense	c.419	p.R140L	1	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RRM_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Prot_kinase_dom	0	no_errors	0	0	0	80	0	0	64	15	18.99	313	0	0.00	275	49	15.12
ANGPTL1	0	genome.wustl.edu	37	1	178821913	178821913	+	Missense_Mutation	SNP	C	C	A			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	1	178821913	178821913	C	A	SNP	ANGPTL1	ENST00000234816	human	ensembl	74_37	-1	known	missense	c.1193	p.R398L	1	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	0	no_errors	0	0	0	53	0	0	67	13	16.25	379	2	0.52	311	18	5.47
CD46	0	genome.wustl.edu	37	1	207941138	207941138	+	Missense_Mutation	SNP	A	A	G			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	1	207941138	207941138	A	G	SNP	CD46	ENST00000322875	human	ensembl	74_37	1	known	missense	c.916	p.T306A	0.182	pirsf_M_CF_CD46	pirsf_M_CF_CD46,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	0	no_errors	0	0	0	82	1	1.2	88	7	7.37	451	0	0.00	440	24	5.17
OR2T1	0	genome.wustl.edu	37	1	248569756	248569756	+	Missense_Mutation	SNP	A	A	G			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	1	248569756	248569756	A	G	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	1	known	missense	c.461	p.Y154C	0.475	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	0	no_errors	0	0	0	40	0	0	50	16	24.24	254	1	0.39	193	55	22.18
MTX3	0	genome.wustl.edu	37	5	79284999	79284999	+	Silent	SNP	G	G	T			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	5	79284999	79284999	G	T	SNP	MTX3	ENST00000512528	human	ensembl	74_37	-1	known	silent	c.297	p.L99	0.004	pfam_Sam37/metaxin,pirsf_Metaxin	pfam_Sam37/metaxin,superfamily_Glutathione-S-Trfase_C-like,pirsf_Metaxin	0	no_errors	0	0	0	170	0	0	147	15	9.26	241	2	0.82	244	20	7.55
EID1	0	genome.wustl.edu	37	15	49170368	49170368	+	RNA	SNP	T	T	C			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	15	49170368	49170368	T	C	SNP	EID1	ENST00000558295	human	ensembl	74_37	1	putative	rna	NULL	NULL	0	0	0	0	no_errors	0	0	0	44	0	0	34	7	17.07	219	0	0.00	161	21	11.48
CFDP1	0	genome.wustl.edu	37	16	75428996	75428996	+	Silent	SNP	G	G	A			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	16	75428996	75428996	G	A	SNP	CFDP1	ENST00000283882	human	ensembl	74_37	-1	known	silent	c.642	p.A214	0.722	NULL	pfam_BCNT-C	0	no_errors	rs371488344	G->A	0.9998,0.0001997	65	0	0	52	4	7.14	259	0	0.00	180	10	5.26
SYN3	0	genome.wustl.edu	37	22	32923933	32923933	+	Silent	SNP	G	G	A			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	22	32923933	32923933	G	A	SNP	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	silent	c.1290	p.G430	1	NULL	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	0	no_errors	0	0	0	77	0	0	62	5	7.35	73	0	0.00	70	3	4.11
EP400NL	0	genome.wustl.edu	37	12	132589423	132589423	+	Silent	SNP	G	G	A			TCGA-4V-A9QS-01A-11D-A423-09	TCGA-4V-A9QS-10A-01D-A426-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2a777225-39dc-48da-b630-ae004006f6db	17622cfb-dcdf-43b3-b287-3beaca4b2980	12	132589423	132589423	G	A	SNP	EP400NL	ENST00000376625	human	ensembl	74_37	1	known	silent	c.858	p.T286	0.189	NULL	NULL	0	no_errors	rs374559184	G->A	0	10	0	0	14	3	17.65	12	0	0.00	7	0	0.00