Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
XPO1	0	genome.wustl.edu	37	2	61706054	61706054	+	Silent	SNP	T	T	C			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	2	61706054	61706054	T	C	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	silent	c.3117	p.E1039	1	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	0	no_errors	0	0	0	46	0	0	23	33	58.93	269	0	0.00	222	141	38.84
GLI2	0	genome.wustl.edu	37	2	121745912	121745912	+	Missense_Mutation	SNP	A	A	G			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	2	121745912	121745912	A	G	SNP	GLI2	ENST00000361492	human	ensembl	74_37	1	known	missense	c.2422	p.S808G	1	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	0	no_errors	0	0	0	16	0	0	7	9	56.25	14	0	0.00	9	4	30.77
TSSK1B	0	genome.wustl.edu	37	5	112770143	112770143	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	5	112770143	112770143	C	T	SNP	TSSK1B	ENST00000390666	human	ensembl	74_37	-1	known	missense	c.394	p.V132I	0.982	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	0	no_errors	rs556130601	C->T	0.9998,0.0001997	38	0	0	31	21	40.38	80	0	0.00	93	75	44.64
PI16	0	genome.wustl.edu	37	6	36930927	36930927	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	6	36930927	36930927	C	T	SNP	PI16	ENST00000373674	human	ensembl	74_37	1	known	missense	c.809	p.T270M	0.836	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	0	no_errors	0	0	0	43	0	0	6	23	79.31	208	0	0.00	35	101	74.26
ENSG00000272782	0	genome.wustl.edu	37	7	97937592	97937592	+	RNA	SNP	G	G	A			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	7	97937592	97937592	G	A	SNP	ENSG00000272782	ENST00000609873	human	ensembl	74_37	1	known	rna	NULL	NULL	0.005	0	0	0	no_errors	0	0	0	27	0	0	33	4	10.81	257	0	0.00	233	24	9.34
KCNV2	0	genome.wustl.edu	37	9	2717989	2717989	+	Missense_Mutation	SNP	G	G	A			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	9	2717989	2717989	G	A	SNP	KCNV2	ENST00000382082	human	ensembl	74_37	1	known	missense	c.250	p.A84T	0	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	0	no_errors	0	0	0	29	0	0	14	17	54.84	90	0	0.00	42	31	42.47
NR2F2	0	genome.wustl.edu	37	15	96875650	96875650	+	Missense_Mutation	SNP	A	A	C			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	15	96875650	96875650	A	C	SNP	NR2F2	ENST00000394166	human	ensembl	74_37	1	known	missense	c.316	p.S106R	1	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	0	no_errors	0	0	0	29	0	0	19	12	38.71	83	0	0.00	64	33	34.02
RLIM	0	genome.wustl.edu	37	X	73815642	73815647	+	Splice_Site	DEL	ACCTGG	ACCTGG	-			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	ACCTGG	ACCTGG	ACCTGG	-	ACCTGG	ACCTGG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	X	73815642	73815647	ACCTGG	0	DEL	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	splice_site_del	c.169+5_169+1	e2-1	1.000:1.000:1.000:1.000:1.000:1.000	0	0	0	no_errors	0	0	0	157	0	0	78	11	12.36	313	0	0.00	199	25	11.16
ANKRD17	0	genome.wustl.edu	37	4	74124012	74124017	+	In_Frame_Del	DEL	TCGTCG	TCGTCG	-			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	TCGTCG	TCGTCG	TCGTCG	-	TCGTCG	TCGTCG	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	4	74124012	74124017	TCGTCG	0	DEL	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	in_frame_del	c.374_369	p.DD123in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	0	no_errors	0	0	0	59	0	0	27	18	40	139	0	0.00	111	32	22.38
POU3F2	0	genome.wustl.edu	37	6	99283173	99283175	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-4V-A9QN-01A-11D-A423-09	TCGA-4V-A9QN-11A-11D-A426-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	95bd2a4a-0a22-458a-8987-f10d8d60073a	fe5dc7bc-e97b-4d07-91f1-3abcbb984f36	6	99283173	99283175	CAG	0	DEL	POU3F2	ENST00000328345	human	ensembl	74_37	1	known	in_frame_del	c.424_426	p.Q145in_frame_del	1.000:1.000:1.000	pirsf_Transcription_factor_POU	pirsf_Transcription_factor_POU,pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	0	no_errors	0	0	0	21	0	0	12	3	20	7	0	0.00	2	0	0.00