Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
NCBP2L	0	genome.wustl.edu	37	X	107037825	107037825	+	Silent	SNP	C	C	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	X	107037825	107037825	C	T	SNP	NCBP2L	ENST00000509000	human	ensembl	74_37	1	known	silent	c.375	p.R125	0	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	0	no_errors	0	0	0	40	0	0	42	7	14.29	81	0	0.00	167	11	6.11
ACTRT2	0	genome.wustl.edu	37	1	2939133	2939133	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	1	2939133	2939133	C	T	SNP	ACTRT2	ENST00000378404	human	ensembl	74_37	1	known	missense	c.883	p.L295F	0.999	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	0	no_errors	0	0	0	84	1	1.16	65	5	7.14	107	0	0.00	127	7	5.22
KCNQ4	0	genome.wustl.edu	37	1	41283912	41283912	+	Missense_Mutation	SNP	G	G	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	1	41283912	41283912	G	T	SNP	KCNQ4	ENST00000347132	human	ensembl	74_37	1	known	missense	c.482	p.R161L	1	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_KCNQ	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	0	no_errors	0	0	0	51	0	0	61	5	7.58	43	0	0.00	83	11	11.70
INTS3	0	genome.wustl.edu	37	1	153737191	153737191	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	1	153737191	153737191	C	T	SNP	INTS3	ENST00000318967	human	ensembl	74_37	1	known	missense	c.1951	p.P651S	1	NULL	pfam_Int_cplx_su3	0	no_errors	0	0	0	52	0	0	54	6	10	185	2	1.07	204	24	10.53
FAM177B	0	genome.wustl.edu	37	1	222919977	222919977	+	Silent	SNP	C	C	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	1	222919977	222919977	C	T	SNP	FAM177B	ENST00000360827	human	ensembl	74_37	1	known	silent	c.90	p.D30	0.998	NULL	NULL	0	no_errors	0	0	0	51	0	0	49	4	7.55	124	0	0.00	143	19	11.73
IMPG1	0	genome.wustl.edu	37	6	76640725	76640725	+	Missense_Mutation	SNP	A	A	G			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	6	76640725	76640725	A	G	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.2188	p.C730R	0.997	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	0	no_errors	0	0	0	54	0	0	40	4	9.09	67	0	0.00	128	11	7.86
ARID3C	0	genome.wustl.edu	37	9	34621494	34621494	+	Silent	SNP	G	G	A			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	9	34621494	34621494	G	A	SNP	ARID3C	ENST00000378909	human	ensembl	74_37	-1	known	silent	c.1200	p.P400	0.44	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	0	no_errors	0	0	0	97	0	0	89	7	7.22	21	0	0.00	52	6	10.17
GAS2	0	genome.wustl.edu	37	11	22770737	22770737	+	Missense_Mutation	SNP	C	C	G			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	11	22770737	22770737	C	G	SNP	GAS2	ENST00000278187	human	ensembl	74_37	1	known	missense	c.545	p.P182R	1	superfamily_CH-domain	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	0	no_errors	0	0	0	102	0	0	82	11	11.7	176	0	0.00	320	26	7.49
CDC42BPB	0	genome.wustl.edu	37	14	103410258	103410258	+	Missense_Mutation	SNP	G	G	A			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	14	103410258	103410258	G	A	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.4378	p.L1460F	1	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	0	no_errors	0	0	0	29	0	0	25	2	7.41	64	0	0.00	94	9	8.74
TP53	0	genome.wustl.edu	37	17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	0	no_errors	0	0	0	61	0	0	64	8	11.11	117	0	0.00	202	22	9.82
DNAH9	0	genome.wustl.edu	37	17	11757406	11757406	+	Silent	SNP	C	C	A			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	17	11757406	11757406	C	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	1	known	silent	c.9594	p.P3198	0	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	0	no_errors	0	0	0	44	0	0	29	6	16.67	93	0	0.00	134	12	8.22
NR1H2	0	genome.wustl.edu	37	19	50881580	50881580	+	Missense_Mutation	SNP	G	G	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	19	50881580	50881580	G	T	SNP	NR1H2	ENST00000253727	human	ensembl	74_37	1	known	missense	c.356	p.G119V	0.039	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Liver_X_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Ecdystd_rcpt,prints_ThyrH_rcpt	0	no_errors	0	0	0	86	0	0	66	8	10.81	55	0	0.00	100	6	5.66
KIF3B	0	genome.wustl.edu	37	20	30918006	30918006	+	Silent	SNP	T	T	C			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	20	30918006	30918006	T	C	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	1	known	silent	c.2031	p.G677	0.973	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	0	no_errors	0	0	0	43	0	0	31	3	8.82	53	0	0.00	81	5	5.81
CTBS	0	genome.wustl.edu	37	1	85040024	85040024	+	Silent	SNP	C	C	T			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	1	85040024	85040024	C	T	SNP	CTBS	ENST00000370630	human	ensembl	74_37	-1	known	silent	c.75	p.L25	0.006	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	0	no_errors	0	0	0	10	1	9.09	12	3	20	0	0	0.00	1	0	0.00
ENSG00000221395	0	genome.wustl.edu	37	16	82875716	82875717	+	RNA	DEL	TG	TG	-			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	16	82875716	82875717	TG	0	DEL	ENSG00000221395	ENST00000408468	human	ensembl	74_37	1	novel	rna	NULL	NULL	0.000:0.000	0	0	0	no_errors	0	0	0	10	1	9.09	9	7	43.75	0	0	0.00	0	0	0.00
PAX1	0	genome.wustl.edu	37	20	21686535	21686537	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-4V-A9QJ-01A-11D-A423-09	TCGA-4V-A9QJ-11A-11D-A426-09	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	371c6c30-dfcd-44c9-8a2d-d1d88a732d45	779572d5-58a0-4ba8-baa1-808c94f63b7f	20	21686535	21686537	GCG	0	DEL	PAX1	ENST00000398485	human	ensembl	74_37	1	known	in_frame_del	c.185_187	p.G66in_frame_del	0.671:0.644:0.606	NULL	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	0	no_errors	0	0	0	20	0	0	15	2	11.76	15	0	0.00	9	0	0.00