Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	rsID	rsID_ref_var_alleles	CAF	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumor_var_reads	tumor_vaf	normal_ref_reads_val	normal_var_reads_val	normal_vaf_val	tumor_ref_reads_val	tumor_var_reads_val	tumor_vaf_val
MT-CO1	0	genome.wustl.edu	37	MT	7364	7364	+	Missense_Mutation	SNP	A	A	C			TCGA-4V-A9QI-01A-11D-A423-09	TCGA-4V-A9QI-10A-01D-A426-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf0b83a4-4850-4332-8adc-1974c46ae6d8	88fd09ae-4414-4bbf-b37d-94c9ed74c7b7	MT	7364	7364	A	C	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	1	known	missense	c.1461	p.E487D	NULL	superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	0	no_errors	0	0	0	146	0	0	88	21	19.27	3	0	0.00	2	0	0.00
CHEK2	0	genome.wustl.edu	37	22	29083913	29083913	+	Missense_Mutation	SNP	C	C	T			TCGA-4V-A9QI-01A-11D-A423-09	TCGA-4V-A9QI-10A-01D-A426-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cf0b83a4-4850-4332-8adc-1974c46ae6d8	88fd09ae-4414-4bbf-b37d-94c9ed74c7b7	22	29083913	29083913	C	T	SNP	CHEK2	ENST00000382580	human	ensembl	74_37	-1	known	missense	c.1733	p.R578H	0.189	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_dom	0	no_errors	rs544216926	C->T	0.9996,0.0003994	77	0	0	51	4	7.27	0	0	0.00	0	0	0.00