Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr20:33345744C>T	ENST00000374796.2	-	8	3377	c.807G>A	c.(805-807)caG>caA	p.Q269Q	NCOA6_ENST00000359003.2_Silent_p.Q269Q			Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	CREBBP-binding region.|Gln-rich.|NCOA1-binding region.|TBP/GTF2A-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding	p.Q269Q(15)		NS(2)|breast(6)|central_nervous_system(3)|cervix(1)|endometrium(9)|kidney(8)|large_intestine(16)|lung(37)|ovary(4)|prostate(5)|skin(13)|upper_aerodigestive_tract(2)|urinary_tract(1)	107						gctgctgctgctgttgttgtt	0.537000													4	41					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14752601	14752601	+	Silent	SNP	A	A	G			TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr18:14752601A>G	ENST00000358984.4	+	2	438	c.258A>G	c.(256-258)gcA>gcG	p.A86A	ANKRD30B_ENST00000579292.1_Intron|ANKRD30B_ENST00000447268.2_Silent_p.A86A	NM_001145029.1	NP_001138501.1	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	86										breast(3)|endometrium(4)|kidney(3)|lung(8)|ovary(1)|prostate(2)|skin(1)	22						ATGGCCATGCAGAAGTAGTAA	0.448000													3	26					0	0	1	0	0
CDCA7	83879	broad.mit.edu	37	2	174223463	174223463	+	Silent	SNP	G	G	A	rs139753635	byFrequency	TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr2:174223463G>A	ENST00000306721.3	+	2	148	c.45G>A	c.(43-45)aaG>aaA	p.K15K	CDCA7_ENST00000392567.2_Silent_p.K15K|CDCA7_ENST00000347703.3_Silent_p.K15K|CDCA7_ENST00000410101.3_Silent_p.K15K|CDCA7_ENST00000410019.3_Intron	NM_031942.4	NP_114148.3	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7	0					regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				breast(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(8)|ovary(1)	18			OV - Ovarian serous cystadenocarcinoma(117;0.116)			GAGTAAAGAAGAACTTAAAGA	0.328000													4	58					0	0	1	0	0
RP11-113D6.10	0	broad.mit.edu	37	11	18231289	18231289	+	Missense_Mutation	SNP	C	C	A	rs4757627	by1000genomes	TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr11:18231289C>A	ENST00000527059.1	+	1	535	c.75C>A	c.(73-75)ttC>ttA	p.F25L	RP11-113D6.10_ENST00000340135.3_Missense_Mutation_p.F25L|RP11-113D6.10_ENST00000534640.1_Missense_Mutation_p.F25L																							CTAACATCTTCGAAACAAGAT	0.363000													6	52					0.0215528	0.0215528	1	1	0
MICAL1	64780	broad.mit.edu	37	6	109767929	109767929	+	Silent	SNP	C	C	T	rs41288556	byFrequency	TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr6:109767929C>T	ENST00000368952.4	-	18	2621	c.2331G>A	c.(2329-2331)gcG>gcA	p.A777A	MICAL1_ENST00000358577.3_Silent_p.A672A|MICAL1_ENST00000358807.3_Silent_p.A758A			Q8TDZ2	MICA1_HUMAN	microtubule associated monooxygenase, calponin and LIM domain containing 1	758					cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			NS(1)|breast(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(6)|liver(1)|lung(7)|ovary(3)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	40		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		CGCTGCCTTCCGCTTTGTGGT	0.572000													3	21					0	0	1	0	0
RP11-404F10.2	0	broad.mit.edu	37	1	160640798	160640798	+	RNA	DEL	T	T	-			TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr1:160640798delT	ENST00000598917.1	+	0	231																											TTCTGAACAATTTTTTTTTTA	0.428													2	4	---	---	---	---					
RP11-697E22.2	0	broad.mit.edu	37	17	36003613	36003614	+	RNA	INS	-	-	T	rs10543338		TCGA-E8-A416-01A-11D-A23M-08	TCGA-E8-A416-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c8381701-31cb-465a-bdf2-1b8132be7a14	d60fc127-2b47-4ce1-a120-f43adc2ae776	g.chr17:36003613_36003614insT	ENST00000586163.1	+	0	590				RP11-697E22.2_ENST00000586950.1_RNA																							CATTAtttatcttttttttttt	0.510													2	4	---	---	---	---