Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV EVA1B 55194 mdanderson.org 37 1 36788207 36788207 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_018166 exon3 c.G187A p.A63T GCTGAGCCGGGCC 18 2 0.11 15 0 0 28 0 0.00 EPS8L3 79574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110300454 110300454 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_139053 exon10 c.C867A p.F289L CTTCTGGAAGCAG 164 27 0.16 124 0 0 0 0 PRG4 10216 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 186276725 186276725 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . PRG4 NM_005807 exon7 c.C1874T p.T625M AGCTCACGCCCAC 58 7 0.12 40 0 0 259 0 0 ANXA11 311 mdanderson.org 37 10 81921708 81921708 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_145868 exon12 c.G1163A p.R388Q TGGGCCCGGCTCC 23 3 0.13 27 0 0 37 1 0.03 MAT1A 4143 mdanderson.org 37 10 82036264 82036264 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 MAT1A,NS,carcinoma,0,1 MAT1A NM_000429 exon6 c.C636A p.D212E CGTGATGTCTTCG 40 3 0.08 50 0 0 0 1 0 0 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134663865 134663865 + Silent SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001200049 exon41 c.C5835T p.S1945S GCCCACGCTCAGC 101 12 0.12 116 0 0 0 0 KNDC1 85442 mdanderson.org 37 10 135012548 135012548 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_152643 exon14 c.G2536T p.G846C CCAGAGGGCCCCG 33 3 0.09 20 0 0 0 0 NRXN2 9379 mdanderson.org 37 11 64374979 64374979 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_015080 exon23 c.C4828T p.P1610S CTGTGGGCAGATG 16 3 0.19 22 0 0 23 0 0.00 ARL2 402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64786160 64786160 + Silent SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 ARL2,NS,carcinoma,+1,1 ARL2 NM_001667 exon3 c.C294T p.R98R CCAGCGCATGCAG 43 7 0.16 53 0 0 1 1 89 38 0.43 CHRDL2 25884 ucsc.edu 37 11 74424504 74424504 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . CHRDL2 NM_015424 exon3 c.C216A p.Y72X GAGGCGGTAACAA 38 4 0.11 61 0 0 47 0 0 ACER3 55331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 76726118 76726118 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_018367 exon8 c.T556C p.F186L TTGGGATTTTTAT 38 7 0.18 51 0 0 1 0 0.00 GRM5 2915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 88338026 88338026 + Silent SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_000842 exon5 c.C1254T p.L418L TGGGCAGAGGGAC 110 18 0.16 110 0 0 0 0 MAML2 84441 broad.mit.edu;mdanderson.org 37 11 95825263 95825263 + Silent SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . MAML2 NM_032427 exon2 c.G1932A p.Q644Q TTGTTGCTGCTGC 47 3 0.06 55 1 0.0181818182 94 1 0 0.00 PLXNC1 10154 bcgsc.ca;mdanderson.org 37 12 94637739 94637739 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . PLXNC1 NM_005761 exon12 c.G2326T p.G776C ATGATGGGCAGAA 98 5 0.05 72 0 0 135 0 0 OXA1L 5018 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 23239418 23239418 + Silent SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_005015 exon5 c.G780A p.S260S TTCCTCGGAGATG 117 9 0.08 98 0 0 41 6 0.15 TRMT61A 115708 broad.mit.edu 37 14 104001019 104001019 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . TRMT61A NM_152307 exon4 c.G731T p.S244I CTGTCAGCCTGCC 47 6 0.13 40 1 0.025 15 24 0 0.00 FBN1 2200 broad.mit.edu 37 15 48703418 48703418 + Silent SNP G G T rs138574576 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . FBN1 NM_000138 exon66 c.C8385A p.I2795I AGATTCGATCAAG 124 5 0.04 111 0 0 310 2 0 0.00 WDR90 197335 mdanderson.org 37 16 717551 717551 + Missense_Mutation SNP C C T rs370037118 TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 WDR90,NS,carcinoma,0,1 WDR90 NM_145294 exon41 c.C5209T p.R1737C GCCGCCCGCAACG 30 3 0.10 33 0 0 0 1 144 0 0.00 UNKL 64718 mdanderson.org 37 16 1417324 1417324 + Silent SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001193388 exon14 c.G1815A p.A605A CTCCTGCGCCTCT 20 2 0.10 22 0 0 5 0 0.00 KLHL36 79786 mdanderson.org 37 16 84690889 84690889 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_024731 exon3 c.G476T p.S159I TCTACAGCCTCAA 38 3 0.08 61 0 0 1 0 0.00 TP53 7157 broad.mit.edu 37 17 7574024 7574024 + Missense_Mutation SNP G G T rs375444154 alternate_allele TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 TP53_ENST00000269305,colon,carcinoma,+2,3 TP53 NM_000546 exon10 c.C1003A p.R335S GCTCACGCCCACG 102 3 0.03 126 1 0.0079365079 33396 3 0 0 WNK4 65266 mdanderson.org 37 17 40936077 40936077 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_032387 exon3 c.G914T p.C305F TCAAGTGCGACAA 36 3 0.08 34 0 0 3 0 0.00 LRRC37A4P 0 broad.mit.edu 37 17 43587323 43587326 + RNA DEL GTAA GTAA - novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 GTAA GTAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . ATTAGGGTAAGTA 6 2 0.33 14 0 0 1 0 0.00 RGS9 8787 mdanderson.org 37 17 63186321 63186321 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_003835 exon11 c.G713T p.R238M TGATGAGGTCCAC 49 3 0.06 42 0 0 0 0 BPTF 2186 ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65890179 65890179 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 BPTF_ENST00000335221,NS,carcinoma,0,2 BPTF NM_004459 exon9 c.G2819T p.C940F AGATGTGTAGCAA 52 5 0.10 65 0 0 415 2 2 0 0.00 FSCN2 25794 mdanderson.org 37 17 79496002 79496002 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_012418 exon1 c.C445T p.R149W AGCCGGCGGCGCT 17 2 0.12 18 0 0 0 0 MKNK2 2872 mdanderson.org 37 19 2039711 2039711 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_199054 exon14 c.C1299A p.C433X CTGCAGGCAGCGT 34 3 0.09 36 0 0 9 0 0.00 NFIC 4782 broad.mit.edu 37 19 3453852 3453852 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . NFIC NM_001245002 exon9 c.T1361C p.L454P TGGCGCTCCCCCC 116 22 0.19 83 9 0.1084337349 36 0 0 HSH2D 84941 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 16263920 16263920 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_032855 exon6 c.G283A p.E95K CCCGGGGAGAAGG 74 15 0.20 47 0 0 6 0 0.00 DHDH 27294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49442835 49442835 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_014475 exon4 c.G496C p.D166H GCCGTAGACCGGG 87 13 0.15 79 0 0 0 0 TTYH1 57348 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 54942000 54942000 + Missense_Mutation SNP C C T rs199946983 by1000genomes TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . TTYH1 NM_020659 exon9 c.C949T p.L317L CTGACTCTGTCCC 64 5 0.08 69 0 0 78 29 3 0.10 VWA3B 200403 mdanderson.org 37 2 98810929 98810929 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_144992 exon12 c.G1711T p.A571S GAACAGGCTCAGT 47 3 0.06 72 0 0 0 0 IL18RAP 8807 broad.mit.edu 37 2 103067331 103067331 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . IL18RAP NM_003853 exon11 c.G1234A p.V412I GCTTTCGTATCCT 72 3 0.04 69 0 0 102 4 0 0.00 ANKRD30BL 554226 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 132919171 132919171 + Silent SNP A A G rs199695856 bycluster TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . ANKRD30BL . . . . ATCCCCATGGTGA 138 12 0.09 119 0 0 36 0 0 ANKRD30BL 554226 broad.mit.edu;mdanderson.org 37 2 132919192 132919192 + Silent SNP G G A rs111295191 bycluster TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . ANKRD30BL . . . . AGAGTCGTTGTTG 136 8 0.06 130 0 0 36 0 0 SPAG16 79582 mdanderson.org 37 2 214149325 214149325 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_024532 exon1 c.G118A p.G40S GCTGAGGGCGCCT 41 3 0.07 42 0 0 1 0 0.00 GPC1 2817 mdanderson.org 37 2 241404986 241404986 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_002081 exon8 c.G1365T p.Q455H CCGGCAGCAGATC 73 4 0.05 81 0 0 41 0 0.00 SIRPG 55423 mdanderson.org 37 20 1610930 1610930 + Silent SNP C C T rs114055242 bycluster;by1000genomes TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_018556 exon5 c.G1104A p.A368A GAGCAGCGCAGTA 52 3 0.06 49 0 0 0.001 58 0 0.00 RBBP8NL 140893 mdanderson.org 37 20 60989122 60989122 + Nonsense_Mutation SNP C C A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_080833 exon10 c.G1285T p.E429X CAGCCTCTGTCCT 34 3 0.09 49 0 0 0 0 BAGE 85319 broad.mit.edu 37 21 11058613 11058614 + RNA INS - - A rs377480117 bycluster TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . TTTTTTTAAAGCA 9 3 0.33 7 0 0 0 0 MED15 51586 bcgsc.ca 37 22 20918767 20918767 + Missense_Mutation SNP A A T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . MED15 NM_015889 exon6 c.A482T p.Q161L CGCTGCAGCAGCA 140 5 0.04 114 0 0 68 49 0 0.00 ADORA2A 135 mdanderson.org 37 22 24829692 24829692 + Missense_Mutation SNP G G A rs202185195 TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_000675 exon2 c.G320A p.R107H CCATCCGCATCCC 27 3 0.11 28 0 0 2 0 0.00 EMID1 129080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29654850 29654850 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_133455 exon15 c.C1249A p.P417T GGCACCCCCAGCC 81 9 0.11 58 0 0 1 0 0.00 FAM227A 646851 broad.mit.edu 37 22 39019280 39019280 + Silent SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001013647 exon10 c.C855A p.T285T AGGATAGGTGCCT 84 3 0.04 87 0 0 0 0 CELSR1 9620 broad.mit.edu;mdanderson.org 37 22 46931534 46931534 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . CELSR1 NM_014246 exon1 c.C1534A p.L512M CGCTCAGCGAGTG 52 4 0.08 51 0 0 242 1 0 0.00 CLASP2 23122 mdanderson.org 37 3 33543150 33543150 + Silent SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_015097 exon38 c.C4455A p.G1485G TTTACTGCCAGTA 35 3 0.09 57 0 0 16 0 0.00 KIF9-AS1 285352 hgsc.bcm.edu 37 3 47276935 47276935 + RNA SNP G G C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . AGTAGGGAATATG 42 7 0.17 61 0 0 0 0 USP19 10869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49146542 49146542 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001199160 exon27 c.G4109A p.G1370E TGGGGCCCCCAGG 142 22 0.15 187 0 0 4 3 0.75 ARHGEF3 50650 mdanderson.org 37 3 56789110 56789110 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 ARHGEF3_ENST00000338458,colon,carcinoma,0,3 ARHGEF3_ENST00000338458 NM_001128615 exon6 c.G370A p.A124T AGGGGGCGGCATT 34 4 0.12 35 0 0 0 3 0 0 DENND6A 201627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57631406 57631406 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_152678 exon11 c.C1019G p.T340S CGGGTAGTATATT 55 12 0.22 44 0 0 1 0 0.00 . 0 broad.mit.edu 37 3 63082863 63082863 + RNA DEL A A - novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . AGCTCTACCTTGT 7 2 0.29 12 0 0 0 0 GABRG2 2566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161528257 161528257 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_198904 exon5 c.G565A p.E189K GATGCTGAGTGCC 52 8 0.15 74 0 0 0 0 FAM83B 222584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 54806767 54806767 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001010872 exon5 c.A2998G p.M1000V GGATTTATGCAAA 137 21 0.15 127 0 0 0 0 BEND3 57673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 107389963 107389963 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001080450 exon5 c.G2432A p.R811H TTGGGGCGGCGGC 73 13 0.18 69 0 0 74 21 0.28 HGC6.3 0 mdanderson.org 37 6 168376840 168376840 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001129895 exon1 c.A493G p.T165A TGTGTGTGGGGAG 165 13 0.08 173 2 0.0115606936 38 1 0.03 IQCE 23288 bcgsc.ca 37 7 2627479 2627479 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . IQCE NM_152558 exon13 c.C1012T p.R338W AAGCCCCGGCTGC 72 4 0.06 54 0 0 66 3 0 0.00 ADAM22 53616 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 87780609 87780609 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_021722 exon20 c.G1655C p.R552T GAGATAGACAATG 110 7 0.06 110 0 0 0 0 SLC18A1 6570 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 20005148 20005148 + Silent SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_003053 exon14 c.C1296T p.I432I ATCAGCGATGGCG 172 12 0.07 133 0 0 0 0 GDAP1 54332 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 75272458 75272458 + Missense_Mutation SNP A A T rs368695731 alternate_allele TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_018972 exon3 c.A397T p.M133L TTGCCAATGGATG 79 8 0.10 86 0 0 0 0 tRNA-Val 0 broad.mit.edu 37 MT 1606 1606 + RNA SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . ACCAGAGTGTAGC 16 4 0.25 9 0 0 0 0 ND4 0 hgsc.bcm.edu;broad.mit.edu 37 MT 11324 11324 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . ENST00000361381 exon1 c.T565C p.S189P TCAAACTCCTGAG 29 12 0.41 11 0 0 0 0 CYTB 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 15831 15831 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . ENST00000361789 exon1 c.T1085C p.I362T CAACAATCCTAAT 14 12 0.86 13 0 0 0 0 EIF2S3 1968 mdanderson.org 37 X 24078274 24078274 + Silent SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001415 exon5 c.G453T p.V151V AGCAGTGATGGAT 48 4 0.08 58 0 0 4 0 0.00 BCAP31 10134 mdanderson.org 37 X 152981136 152981136 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . NM_001139457 exon4 c.C403A p.R135S TTTCGCGCACGGC 44 3 0.07 47 0 0 74 0 0.00 BAHCC1 57597 mdanderson.org 37 17 79422408 79422408 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0N-01A-21D-A435-10 TCGA-ZM-AA0N-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a14779a4-7bb5-4393-bf69-2fb981af9662 d558f583-6c20-4f1d-a431-dda54d4d3f05 . . . . . . CAGACTGCCTCCG 32 3 0.09 29 0 0 0 0