Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ATAD3B 83858 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 1431185 1431185 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . ATAD3B NM_031921 exon16 c.C1935A p.H645Q AGGGCACCCCCTG 34 5 0.15 22 0 0 68 438 100 0.23 PRDM16 63976 mdanderson.org 37 1 3328826 3328826 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_022114 exon9 c.G2065T p.A689S GGCGCCGCCGGGG 40 3 0.08 41 0 0 0 0 TARDBP 23435 bcgsc.ca 37 1 11082189 11082189 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . TARDBP NM_007375 exon6 c.G723T p.Q241H TGCGCAGTCTCTT 62 4 0.06 92 0 0 31 29 0 0.00 . 100421113 bcgsc.ca 37 1 17077216 17077216 + RNA SNP G G T rs1759214 bycluster;byfrequency TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . CTGGAGGAGGAGC 52 9 0.17 60 1 0.0166666667 0 0 WASF2 10163 broad.mit.edu 37 1 27736326 27736328 + In_Frame_Del DEL GGA GGA - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 GGA GGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . WASF2 NM_006990 exon8 c.1197_1199del p.399_400del GGCCCCGGAGGAG 164 0 0.00 131 0 0 41 6 0 0.00 WASF2 10163 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27736390 27736390 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . WASF2 NM_006990 exon8 c.C1135T p.P379S GTGGTGGCAGAGT 183 25 0.14 127 1 0.0078740157 41 7 1 0.14 AK2 204 bcgsc.ca 37 1 33476435 33476435 + Splice_Site SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . AK2 NM_013411 exon8 c.695-1G>T . ACTAGGCTGAAAT 32 6 0.19 45 0 0 27 5 0 0.00 SNIP1 79753 broad.mit.edu 37 1 38019751 38019751 + Missense_Mutation SNP A A C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . SNIP1 NM_024700 exon1 c.T80G p.V27G ACCACCACCCCCG 72 22 0.31 73 14 0.1917808219 44 4 0 0.00 PTGER3 5733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 71512740 71512740 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001126044 exon1 c.C521T p.T174I GCGCGGGTGGCAC 59 9 0.15 45 0 0 0 0 AMY2A 279 broad.mit.edu 37 1 104160107 104160107 + Silent SNP T T C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . AMY2A NM_000699 exon1 c.T45C p.A15A CTGGGCTCAGTAT 668 8 0.01 468 0 0 36 1 0 0.00 NTNG1 22854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 107866930 107866930 + Silent SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_014917 exon3 c.G273A p.E91E TAATGAGTGTGAT 184 12 0.07 140 0 0 7 0 0.00 MAB21L3 126868 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 116670202 116670202 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_152367 exon5 c.G597T p.K199N GTCCAAGAAAGCC 186 16 0.09 125 0 0 0 0 . 0 broad.mit.edu 37 1 121245721 121245721 + RNA DEL A A - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . CAAAACAAAAAAA 6 2 0.33 8 0 0 1 0 0.00 PAQR6 79957 broad.mit.edu;mdanderson.org 37 1 156216033 156216033 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . PAQR6 NM_001272104 exon3 c.G60T p.W20C ATCTTCCCAGAAC 66 4 0.06 44 0 0 23 7 1 0.14 . 0 bcgsc.ca 37 1 160905610 160905610 + RNA SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . GAGCTGGCACAGC 62 6 0.10 31 0 0 0 0 DARS2 55157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 173802622 173802622 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_018122 exon6 c.C601A p.L201I GAATATCTCTGTA 66 7 0.11 56 0 0 0 0 TOR1AIP1 26092 broad.mit.edu 37 1 179851685 179851685 + Silent SNP T T G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . TOR1AIP1 NM_001267578 exon1 c.T48G p.G16G ATGGGGTGTGTAC 46 17 0.37 39 9 0.2307692308 58 2 1 0.50 OR2L3 391192 hgsc.bcm.edu 37 1 248224864 248224864 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb OR2L3,NS,carcinoma,+1,1 OR2L3 NM_001004687 exon1 c.A881G p.K294R GGAACAAGGAGGT 66 4 0.06 53 1 0.0188679245 1 1 0 0 ASCC1 51008 broad.mit.edu 37 10 73956741 73956741 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . ASCC1 NM_001198799 exon6 c.C401A p.T134N TGGCCAGTGATTA 61 4 0.07 96 1 0.0104166667 18 9 0 0.00 GRK5 2869 mdanderson.org 37 10 121086116 121086116 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_005308 exon2 c.G141T p.R47S CCGAAGGACCATA 44 3 0.07 45 0 0 0 0 RNASEH2C 84153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65487762 65487762 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_032193 exon2 c.G299T p.R100L GAATCCCGCAAGG 53 9 0.17 67 0 0 181 33 0.18 TENM4 26011 mdanderson.org 37 11 78614378 78614378 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001098816 exon7 c.C684A p.G228G CTGGGCGCCGCCG 34 3 0.09 38 0 0 0 0 ARHGAP32 9743 mdanderson.org 37 11 128844779 128844779 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001142685 exon20 c.C2271A p.D757E CTCATTGTCATGA 45 3 0.07 73 0 0 0 0 KIF5A 3798 broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 57965876 57965876 + Silent SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . KIF5A NM_004984 exon14 c.G1395A p.K465K CGAGAAGGTCCAG 60 5 0.08 61 0 0 143 1 0 0.00 PPM1H 57460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 63225974 63225974 + Missense_Mutation SNP T T A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_020700 exon2 c.A331T p.T111S TTGAGGTCACGGC 131 22 0.17 92 0 0 0 0 NAV3 89795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 78591111 78591111 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_014903 exon34 c.G6310C p.D2104H ATTCTTGATAATC 76 11 0.14 50 0 0 0 0 SRSF9 8683 mdanderson.org 37 12 120907259 120907259 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_003769 exon1 c.G154A p.V52M AGGGCACGAGGCC 48 3 0.06 43 0 0 85 0 0.00 HSPH1 10808 mdanderson.org 37 13 31727058 31727058 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb HSPH1,NS,carcinoma,0,1 HSPH1 NM_006644 exon5 c.C460A p.R154R CAGATCGCCTCTC 50 3 0.06 47 0 0 0 1 5 0 0.00 ABHD12B 145447 mdanderson.org 37 14 51371075 51371075 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001206673 exon13 c.G1080T p.Q360H CAAGCAGTGGTCA 43 3 0.07 53 0 0 31 0 0.00 ACOT6 641372 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 74086215 74086215 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . ACOT6 NM_001037162 exon2 c.A296G p.K99R TGGAAAAGGCGCA 86 5 0.06 102 0 0 12 0 0 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 96761397 96761397 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_018036 exon36 c.C5326G p.Q1776E CATTTTGGGAAGG 152 19 0.13 150 0 0 4 1 0.25 FAM98B 283742 broad.mit.edu 37 15 38762579 38762579 + Silent SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . FAM98B NM_001042429 exon4 c.G504A p.P168P CATTCCGCATATG 443 6 0.01 371 0 0 53 9 0 0.00 INO80 54617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41308347 41308347 + Missense_Mutation SNP T T G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_017553 exon27 c.A3341C p.K1114T TGAGACTTGAGCC 58 8 0.14 66 0 0 8 2 0.25 SLC9A3R2 9351 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 2086857 2086857 + Silent SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_004785 exon4 c.C723G p.V241V TCGGGTCACACCC 96 7 0.07 84 0 0 40 3 0.08 RNPS1 10921 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2312409 2312409 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . RNPS1 NM_006711 exon6 c.C546A p.S182S ATAGGTGGAAAAT 64 14 0.22 58 1 0.0172413793 18 46 15 0.33 RNPS1 10921 mdanderson.org 37 16 2312754 2312754 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_006711 exon5 c.G509A p.R170Q ACATTCCGGGTGA 36 3 0.08 53 0 0 53 0 0.00 CCNF 899 mdanderson.org 37 16 2487271 2487271 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001761 exon5 c.G488T p.C163F GAAGCTGCTGCAA 28 3 0.11 16 0 0 1 0 0.00 GTF3C1 2975 mdanderson.org 37 16 27544702 27544702 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001520 exon5 c.C759A p.S253R GTATTTGCTCCTC 48 3 0.06 51 0 0 2 0 0.00 APOBR 55911 mdanderson.org 37 16 28509769 28509769 + Silent SNP G G A rs368617607 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb APOBR,NS,carcinoma,+2,1 APOBR NM_018690 exon4 c.G3237A p.A1079A CCTCGCGCACCCT 45 3 0.07 37 0 0 2 1 154 0 0.00 RNF40 9810 broad.mit.edu 37 16 30783266 30783266 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . RNF40 NM_014771 exon18 c.A2699G p.K900R GTGAGAAAGAGAG 134 5 0.04 132 0 0 83 31 0 0.00 . 0 bcgsc.ca 37 16 64294526 64294526 + RNA SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . GTTCTACCCATGA 82 5 0.06 88 1 0.0113636364 0 0 ZNF276 92822 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 89789843 89789843 + Missense_Mutation SNP C C G rs200666334 alternate_allele TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . ZNF276 NM_001113525 exon4 c.C732G p.T244T GGATACCAGCTCC 133 11 0.08 114 1 0.0087719298 70 15 2 0.13 FLJ36000 0 hgsc.bcm.edu 37 17 21904900 21904900 + RNA SNP T T A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . CCTCTCTGGACAA 56 6 0.11 63 0 0 9 0 0.00 KRT18P55 0 broad.mit.edu 37 17 26633347 26633348 + RNA INS - - G rs35679432 bycluster TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . TGTTGTTTTTTTT 10 7 0.70 12 0 0 0 0 MLLT6 0 broad.mit.edu 37 17 36861701 36861703 + RNA DEL GAG GAG - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . MLLT6 . . . . GCGAGCGAGGAGG 6 2 0.33 5 0 0 80 0 0 MRPL45P2 0 broad.mit.edu 37 17 45559947 45559947 + RNA DEL A A - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . AAAAATAAAAAAA 6 2 0.33 7 0 0 1 0 0.00 SKAP1 8631 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 46507464 46507464 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . SKAP1 NM_003726 exon1 c.C19T p.P7S CCTCAGGGAGGGC 67 6 0.09 76 0 0 41 0 0 CASKIN2 57513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73509845 73509845 + Silent SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_020753 exon2 c.C41C p.S14S ACATCTCCATTCT 82 14 0.17 65 0 0 0 0 NPC1 4864 broad.mit.edu;bcgsc.ca 37 18 21119403 21119403 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . NPC1 NM_000271 exon19 c.A2827G p.I943V CGTCGATCCAGGA 95 6 0.06 115 1 0.0086956522 114 17 0 0.00 ZNF271 10778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 32888830 32888830 + RNA SNP T T G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . TATTTTTAAATTC 184 24 0.13 165 0 0 32 3 0.09 SLC39A6 25800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 33696734 33696734 + Silent SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_012319 exon6 c.G1368A p.K456K AGGTTTCTTCTGA 73 13 0.18 50 0 0 1 0 0.00 VPS4B 9525 broad.mit.edu 37 18 61067303 61067303 + Silent SNP C C T rs146071226 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . VPS4B NM_004869 exon7 c.G768A p.T256T GAACTCCGTCTTA 146 3 0.02 147 0 0 33 1 0 0.00 CD226 10666 mdanderson.org 37 18 67563188 67563188 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_006566 exon4 c.C476A p.P159H TGCACAGGCCACG 50 3 0.06 49 0 0 2 0 0.00 MCOLN1 57192 mdanderson.org 37 19 7594053 7594053 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_020533 exon10 c.G1201A p.V401M GTGGGCGTGATCC 46 3 0.07 49 0 0 33 0 0.00 MUC16 94025 mdanderson.org 37 19 9057408 9057408 + Missense_Mutation SNP A A T rs1423051 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_024690 exon3 c.T30038A p.L10013H ACAAAGAGAGAGC 66 3 0.05 63 0 0 0 0 CCDC151 115948 broad.mit.edu;mdanderson.org 37 19 11534699 11534699 + Splice_Site SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . CCDC151 NM_145045 exon9 c.964-1G>C . GTGGGTCTGCTCG 27 3 0.11 22 0 0 44 0 0 NFIX 4784 mdanderson.org 37 19 13192670 13192670 + Splice_Site SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_002501 exon8 c.1254+1G>T . GGACAGGTGAGTC 43 3 0.07 39 0 0 0 0 SPINT2 10653 bcgsc.ca 37 19 38779803 38779807 + Frame_Shift_Del DEL CCACT CCACT - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 CCACT CCACT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . SPINT2 NM_021102 exon4 c.363_367del p.121_123del TGAAGACCACTCC 59 5 0.08 76 0 0 17 135 0 0.00 GMFG 9535 mdanderson.org 37 19 39819174 39819174 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_004877 exon7 c.C372A p.R124R AGTGGTGCGGATT 43 3 0.07 43 0 0 491 0 0.00 POU2F2 5452 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42599534 42599534 + Silent SNP G G A rs369799078 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . POU2F2 NM_001207025 exon11 c.C1035T p.F345F GTTGCAGAACCAG 44 7 0.16 26 0 0 106 3 0 0.00 ZNF283 284349 mdanderson.org 37 19 44352551 44352551 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_181845 exon7 c.G1798T p.E600X TCTTATGAATGTA 81 5 0.06 70 0 0 6 0 0.00 RPS7 6201 broad.mit.edu;bcgsc.ca 37 2 3627893 3627894 + Frame_Shift_Del DEL GA GA - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 GA GA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . RPS7 . . . . CACAGTGAGAGTG 68 8 0.12 90 0 0 13 22 0 0.00 YWHAQ 10971 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 9727624 9727624 + Silent SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_006826 exon5 c.C597T p.A199A AGCAATGGCCTCA 166 20 0.12 145 0 0 117 14 0.12 HEATR5B 54497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 37235845 37235845 + Silent SNP T T C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_019024 exon28 c.A4431G p.L1477L TGTTGGTAGTTCA 81 8 0.10 93 0 0 41 8 0.20 MTIF2 4528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 55479643 55479643 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_002453 exon8 c.G811A p.E271K TAGATTCTACAGT 171 30 0.18 160 0 0 17 1 0.06 POTEE 445582 broad.mit.edu 37 2 132021542 132021542 + Silent SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001083538 exon15 c.C2514T p.A838A CCAGGCCGTGCCG 128 5 0.04 113 1 0.0088495575 0 0 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141093382 141093382 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_018557 exon78 c.A11918G p.D3973G GCAATGTCCCTGG 117 13 0.11 144 0 0 0 0 DNAJC10 54431 mdanderson.org 37 2 183583004 183583004 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001271581 exon3 c.C191A p.P64H TACATCCTGATAA 35 3 0.09 21 0 0 3 0 0.00 PECR 55825 mdanderson.org 37 2 216930061 216930061 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_018441 exon3 c.C398T p.T133M GTACCCGTCAGGT 61 4 0.07 73 0 0 1 0 0.00 CDC25B 994 mdanderson.org 37 20 3785522 3785522 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_021873 exon16 c.G1657T p.E553X AAGGATGAGCTAA 41 3 0.07 33 0 0 50 0 0.00 MIR647 693232 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 20 62573996 62573996 + RNA SNP G G C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . CCCCCAGCCCTGC 58 7 0.12 54 0 0 4 0 0.00 GART 2618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 34889725 34889725 + Silent SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001136005 exon15 c.G1893A p.V631V TTTTGCCACGATT 65 5 0.08 73 0 0 26 4 0.15 TTC3 7267 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 38468893 38468893 + Silent SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001001894 exon10 c.C795T p.Y265Y AAACTACCTTCTT 168 16 0.10 108 0 0 17 2 0.12 MYO18B 84700 mdanderson.org 37 22 26173563 26173563 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_032608 exon8 c.G1883A p.R628H AGGGCCGCCGGGA 36 3 0.08 42 0 0 0 0 KIAA1656 0 hgsc.bcm.edu 37 22 30766163 30766163 + RNA SNP T T A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . GAAAGTTCTCTCT 14 5 0.36 16 0 0 0 0 LMF2 91289 mdanderson.org 37 22 50944795 50944795 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_033200 exon4 c.C514A p.R172R GCCATCGCACCAG 27 3 0.11 15 0 0 18 0 0.00 ATP2B2 491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 10417235 10417235 + Missense_Mutation SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001001331 exon11 c.G1295C p.C432S GGCGTGCACTCAG 120 14 0.12 116 0 0 0 0 SLITRK3 22865 broad.mit.edu 37 3 164905991 164905991 + Silent SNP T T C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb SLITRK3,NS,carcinoma,-1,1 SLITRK3 NM_014926 exon2 c.A2628G p.G876G ACAGCCTCCCCCA 93 4 0.04 70 0 0 263 1 0 0 FAM157A 728262 hgsc.bcm.edu 37 3 197880169 197880169 + Missense_Mutation SNP A A T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001145248 exon2 c.A248T p.Q83L AGCAGCAGCAACT 228 11 0.05 258 0 0 0 0 HTT 3064 broad.mit.edu 37 4 3076603 3076604 + In_Frame_Ins INS - - CAG rs10618869 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . HTT NM_002111 exon1 c.51_52insCAG p.F17delinsFQ GTCCTTCCAGCAG 8 3 0.38 6 0 0 221 0 0 LIMCH1 22998 broad.mit.edu 37 4 41615586 41615586 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . LIMCH1 NM_014988 exon7 c.G590T p.G197V GCCACGGCAGAGA 108 4 0.04 111 0 0 233 0 0 BEND4 389206 broad.mit.edu;mdanderson.org 37 4 42145560 42145560 + Silent SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . BEND4 NM_001159547 exon3 c.G939A p.E313E CTCCTCCTCTTCT 79 4 0.05 95 0 0 67 3 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55602664 55602664 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb KIT,caecum,carcinoma,0,3 KIT NM_000222 exon18 c.G2485C p.A829P TTACAGGCTCGAC 74 18 0.24 72 0 0 0 3 11 9 0.82 LARP7 51574 mdanderson.org 37 4 113575239 113575239 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001267039 exon14 c.G1613T p.R538M AACAAAGGTATTG 85 4 0.05 81 0 0 343 0 0.00 PCDH18 54510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 138452613 138452613 + Silent SNP T T G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_019035 exon1 c.A630C p.S210S GTAGCTTGACTTC 62 6 0.10 69 0 0 0 0 TENM3 55714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 183664532 183664532 + Missense_Mutation SNP A A T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001080477 exon18 c.A3589T p.I1197L CGGCGGATATTCC 138 29 0.21 113 0 0 1 0 0.00 CHD1 1105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 98234123 98234123 + Missense_Mutation SNP T T A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001270 exon9 c.A1202T p.K401M GCTGACTTTTGAT 56 10 0.18 71 0 0 0 0 RUFY1 80230 mdanderson.org 37 5 179036460 179036460 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_025158 exon18 c.G2067T p.V689V GCCGGTGCGAGTG 35 3 0.09 38 0 0 99 0 0.00 HIST1H3C 8352 broad.mit.edu 37 6 26045967 26045968 + Frame_Shift_Del DEL TG TG - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . HIST1H3C NM_003531 exon1 c.329_330del p.110_110del CCAATCTGTGCGC 63 7 0.11 59 0 0 34 4 0 0.00 ZNF184 7738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27419641 27419641 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_007149 exon6 c.C1697T p.T566I CTGAAGGTTTTCC 65 9 0.14 53 0 0 9 3 0.33 MICB 4277 ucsc.edu;mdanderson.org 37 6 31474930 31474930 + Missense_Mutation SNP A A G rs201701343 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . MICB NM_005931 exon4 c.A745G p.N249D AGCCACAACACCC 123 18 0.15 119 6 0.0504201681 26 8 2 0.25 PBX2 5089 broad.mit.edu 37 6 32155509 32155509 + Missense_Mutation SNP T T A rs202223627 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb PBX2,NS,carcinoma,0,4 PBX2 NM_002586 exon5 c.A785T p.Y262F TAGAAATACTCAT 86 5 0.06 86 1 0.011627907 29 4 46 0 0.00 COL11A2 1302 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 33139321 33139321 + Silent SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_080680 exon43 c.C3181A p.R1061R CATCTCGGCCAGT 81 6 0.07 81 0 0 0 0 EZR 7430 mdanderson.org 37 6 159188482 159188482 + Silent SNP T T G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_003379 exon12 c.A1407C p.A469A CGGGGGTGCTGTC 48 14 0.29 35 2 0.0571428571 67 3 0.04 C6orf99 100130967 mdanderson.org 37 6 159316338 159316338 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001195032 exon2 c.G71T p.R24L ATTACCGTTTCCA 36 4 0.11 41 0 0 1 0 0.00 IGF2R 3482 broad.mit.edu 37 6 160445736 160445736 + Splice_Site SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . IGF2R NM_000876 exon5 c.G646T p.D216Y GACATAGGTATGA 63 3 0.05 63 0 0 251 1 0 0.00 MLLT4 4301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 168276034 168276034 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_001040000 exon5 c.G598A p.A200T CTGGCTGCTGAGG 68 7 0.10 77 0 0 1 0 0.00 . 0 broad.mit.edu 37 7 65888170 65888170 + RNA DEL A A - novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . CAGAGCAAAAAAA 5 3 0.60 6 0 0 19 0 0.00 LRCH4 4034 mdanderson.org 37 7 100179705 100179705 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_002319 exon3 c.C451A p.L151M GGGGCAGGGCTCC 47 3 0.06 33 0 0 30 0 0.00 . 0 broad.mit.edu;bcgsc.ca 37 8 30209831 30209831 + RNA SNP A A C novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . GGGCCAAAGGCCA 131 7 0.05 110 0 0 63 0 0.00 NRG1 3084 bcgsc.ca 37 8 32617775 32617775 + Missense_Mutation SNP G G T rs373062517 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . NRG1 NM_013956 exon12 c.G1134T p.M378I CGTGATGTCATCC 128 6 0.05 102 0 0 260 0 0 RAB11FIP1 80223 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 37756869 37756869 + Missense_Mutation SNP G G A rs372489374 TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . RAB11FIP1 NM_025151 exon1 c.C91T p.R31W TGGCCCGCAGGCC 31 4 0.13 43 0 0 105 0 0 HOOK3 84376 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 42798490 42798490 + Missense_Mutation SNP C C G novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_032410 exon5 c.C302G p.P101R CCCTTCCTGATGT 118 11 0.09 79 0 0 3 0 0.00 ABCD1 215 mdanderson.org 37 X 153008788 153008788 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . NM_000033 exon9 c.G1979A p.R660Q CCCACCGGCCCTC 36 3 0.08 28 0 0 43 0 0.00 LTBP4 8425 mdanderson.org 37 19 41128450 41128450 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0H-01A-11D-A435-10 TCGA-ZM-AA0H-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b4d6bc81-a99b-4529-bdcc-1b06b8a0cb17 279b58a7-0a6f-44f8-bf5c-d16e07ee0dfb . . . . . . ACACAGCGGCCCC 47 3 0.06 56 0 0 41 0 0.00