Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV VPS13D 55187 mdanderson.org 37 1 12304672 12304672 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_015378 exon5 c.G445T p.E149X AATATTGAAGTAA 89 5 0.06 60 0 0 0 0 ATP13A2 23400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17312499 17312499 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001141974 exon27 c.C3458T p.S1153L AGCACTGAGGGGA 42 10 0.24 54 0 0 181 34 0.19 CELA3A 10136 ucsc.edu 37 1 22329543 22329543 + Missense_Mutation SNP C C A rs7519660 bycluster;by2hit2allele;by1000genomes TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . CELA3A NM_005747 exon2 c.C91A p.H31N GTTGTCCATGGTG 39 10 0.26 54 5 0.0925925926 35 0 0 RSPO1 284654 mdanderson.org 37 1 38078478 38078478 + Silent SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001242908 exon7 c.G741A p.Q247Q CTGCTGCTGTTGC 39 3 0.08 39 0 0 0 0 NBPF10 100132406 broad.mit.edu 37 1 145293269 145293269 + Splice_Site SNP G G A rs75226570 TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . NBPF10 . . . . ACAACAGTAAGTT 29 4 0.14 22 0 0 221 0 0 C1orf56 54964 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 151020692 151020701 + Frame_Shift_Del DEL GCTTCCCAGT GCTTCCCAGT - novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 GCTTCCCAGT GCTTCCCAGT Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . C1orf56 NM_017860 exon1 c.368_377del p.123_126del CAGAGAGCTTCCC 59 29 0.49 72 0 0 25 2 0 0.00 AXDND1 126859 broad.mit.edu 37 1 179504046 179504046 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 AXDND1,caecum,carcinoma,0,2 AXDND1 NM_144696 exon25 c.G2980C p.E994Q CAACAAGAAGAAG 215 6 0.03 160 0 0 142 2 8 0 0.00 LARP4B 23185 mdanderson.org 37 10 860954 860954 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_015155 exon16 c.C1752A p.P584P CACCGAGGGCTCT 43 3 0.07 57 0 0 13 0 0.00 PIDD 55367 mdanderson.org 37 11 799966 799966 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_145886 exon15 c.G2323A p.A775T AGGGTGCCAAGGA 32 3 0.09 69 0 0 84 0 0.00 CRY2 1408 hgsc.bcm.edu;mdanderson.org 37 11 45869127 45869127 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 CRY2,colon,carcinoma,0,1 CRY2 NM_021117 exon1 c.G149T p.R50L GGTTCCGCAAAGG 20 2 0.10 20 0 0 0 1 0 0 CHRM1 1128 mdanderson.org 37 11 62677554 62677554 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_000738 exon2 c.G1019A p.G340D TTCTGGCCCTTGC 24 2 0.08 39 0 0 0 0 FERMT3 83706 mdanderson.org 37 11 63974970 63974970 + Missense_Mutation SNP T T G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_031471 exon2 c.T134G p.V45G GCGGGGTGCTCCT 62 17 0.27 116 33 0.2844827586 5 1 0.20 ALG9 79796 mdanderson.org 37 11 111706994 111706994 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_024740 exon14 c.C1496A p.S499X AACTCTGATGGAA 43 3 0.07 72 0 0 32 0 0.00 KRT84 3890 mdanderson.org 37 12 52774348 52774348 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_033045 exon7 c.C1223T p.A408V GCCACTGCAGCCT 42 3 0.07 33 0 0 0 0 PAN2 9924 broad.mit.edu 37 12 56719235 56719235 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . PAN2 NM_014871 exon9 c.C1363A p.P455T TGTAGGGTATCTA 100 4 0.04 78 0 0 107 22 0 0.00 FAM109A 144717 mdanderson.org 37 12 111800828 111800828 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001177996 exon4 c.G443A p.G148D GCCATGCCACCCC 16 2 0.13 23 0 0 1 0 0.00 PEBP1 5037 mdanderson.org 37 12 118574112 118574112 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_002567 exon1 c.C98T p.A33V GGGCGGCGGTGGA 15 2 0.13 18 0 0 100 0 0.00 CCDC64 92558 mdanderson.org 37 12 120527873 120527873 + Nonsense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_207311 exon8 c.C1558T p.Q520X GCTTGGCAGGTAA 42 3 0.07 69 0 0 52 0 0.00 JPH4 84502 mdanderson.org 37 14 24044904 24044904 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 JPH4,NS,carcinoma,0,1 JPH4 NM_032452 exon4 c.G1141A p.A381T CAGCGGCGATCTC 41 3 0.07 44 0 0 0 1 0 0 KCNH5 27133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 63447863 63447863 + Silent SNP A A G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_172375 exon6 c.T669C p.I223I GGTAAGAATTAAA 86 14 0.16 104 0 0 2 2 1.00 FUT8 2530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 66028473 66028473 + Silent SNP C C T rs372888976 TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_178155 exon3 c.C192T p.A64A AATGGCCGAATCT 50 5 0.10 51 0 0 1 0 0.00 EIF2B2 8892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 75475839 75475839 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_014239 exon8 c.A1004G p.Y335C CTTCCTACATCTA 120 31 0.26 182 0 0 59 15 0.25 IRF2BPL 64207 mdanderson.org 37 14 77493591 77493591 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_024496 exon1 c.G545A p.S182N CTGCTGCTTCCCA 20 2 0.10 46 0 0 9 0 0.00 . 283685 broad.mit.edu 37 15 23685464 23685465 + In_Frame_Ins INS - - TCT rs373462853 alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . . . . . CTCCTGATCTCCT 5 3 0.60 4 0 0 0 0 ISLR2 57611 mdanderson.org 37 15 74427119 74427119 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001130136 exon4 c.A2024G p.E675G AGGGGGAGGGCCT 57 6 0.11 55 0 0 0 0 IQGAP1 8826 mdanderson.org 37 15 90991921 90991921 + Missense_Mutation SNP G G T rs138254672 bycluster;byfrequency;alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_003870 exon10 c.G1030T p.D344Y AATAGCGACTGGT 45 3 0.07 85 0 0 3 0 0.00 NTN3 4917 mdanderson.org 37 16 2522076 2522076 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_006181 exon1 c.G374T p.C125F GCTTCTGCTCAGC 19 3 0.16 31 0 0 0 0 PPL 5493 broad.mit.edu 37 16 4934417 4934417 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . PPL NM_002705 exon22 c.C4239A p.R1413R CTCCCTGCGGGCC 47 3 0.06 56 0 0 168 0 0 ABCC12 94160 mdanderson.org 37 16 48180307 48180307 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_033226 exon1 c.C29A p.S10X AGATCTGAGATAA 44 3 0.07 75 1 0.0133333333 0 0 ARL2BP 23568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 57283712 57283712 + Silent SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_012106 exon4 c.C241T p.L81L GAACAGCTGCTGC 58 7 0.12 62 0 0 7 0 0.00 GALNS 2588 mdanderson.org 37 16 88884506 88884506 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_000512 exon13 c.C1391A p.A464D CTGAGGGCCTCCT 18 2 0.11 27 0 0 19 0 0.00 POLR2A 5430 ucsc.edu 37 17 7415174 7415174 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 POLR2A,NS,carcinoma,0,1 POLR2A NM_000937 exon25 c.G4146T p.L1382L GGAGCTGTACCAC 44 4 0.09 57 0 0 157 1 12 0 0.00 MYH13 8735 mdanderson.org 37 17 10204986 10204986 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 MYH13_ENST00000252172,NS,carcinoma,0,6 MYH13_ENST00000252172 NM_003802 exon40 c.G5702A p.R1901Q ACTCTCCGGCATC 23 3 0.13 42 0 0 0 6 19 0 0.00 CNP 1267 mdanderson.org 37 17 40125922 40125922 + Nonsense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_033133 exon4 c.C1246T p.Q416X GCCTTGCAGTCCT 17 2 0.12 9 0 0 42 0 0.00 VPS25 84313 broad.mit.edu 37 17 40925483 40925484 + Translation_Start_Site INS - - GGCTACTACGAT novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . VPS25 . . . . TTTCCTGGGCTAC 115 12 0.10 138 0 0 11 11 0 0.00 HELZ 9931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65119087 65119087 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_014877 exon26 c.C3629G p.P1210R CTTACAGGTAAAG 93 17 0.18 88 0 0 8 6 0.75 GALK1 2584 mdanderson.org 37 17 73759111 73759111 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_000154 exon4 c.C595A p.L199M TGAGCAGCGCGTG 31 3 0.10 42 0 0 35 0 0.00 TMEM200C 645369 mdanderson.org 37 18 5892041 5892041 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001080209 exon1 c.C22A p.L8I TCCTTAGCAGGCC 20 2 0.10 36 0 0 2 0 0.00 LAMA1 284217 mdanderson.org 37 18 7040215 7040215 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_005559 exon10 c.C1282A p.P428T TACATGGGCACTG 38 3 0.08 62 1 0.0161290323 0 0 C19orf35 374872 mdanderson.org 37 19 2278645 2278645 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_198532 exon3 c.G550A p.D184N GGGCGTCCCCGCT 21 3 0.14 30 0 0 1 0 0.00 MAP2K2 5605 broad.mit.edu 37 19 4090612 4090612 + Missense_Mutation SNP G G T rs117945277 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . MAP2K2 NM_030662 exon11 c.C1187A p.T396K GTGCGCGTGGGTG 102 3 0.03 124 0 0 72 933 1 0.00 ZNF653 115950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11597957 11597957 + Silent SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_138783 exon5 c.C1188T p.C396C TAGCAAGCACAGG 51 19 0.37 47 0 0 21 10 0.48 CYP4F11 57834 mdanderson.org 37 19 16025653 16025653 + Missense_Mutation SNP G G A rs374763718 alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 CYP4F11,right_upper_lobe,carcinoma,+1,1 CYP4F11 NM_021187 exon9 c.C1168T p.R390W GCAACCGCAGGCT 85 4 0.05 83 0 0 1 1 0 0 LOC284395 0 broad.mit.edu 37 19 29917557 29917558 + RNA INS - - TGC rs202133080 by1000genomes TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . . . . . ACTACATTGCTGT 10 4 0.40 3 0 0 0 0 ZNF585A 199704 hgsc.bcm.edu 37 19 37643935 37643935 + Missense_Mutation SNP C C T rs368991030 TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 ZNF585A,colon,carcinoma,0,1 ZNF585A NM_199126 exon6 c.G701A p.R234Q ATTCTTCGGTGTG 124 5 0.04 105 0 0 0 1 0 0 PXDN 7837 mdanderson.org 37 2 1653131 1653131 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_012293 exon17 c.C2421A p.T807T TGTGACGGTCTCC 53 3 0.06 69 0 0 0 0 ATP6V1C2 245973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 10908882 10908882 + Missense_Mutation SNP C C T rs201753402 by1000genomes TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001039362 exon6 c.C416T p.T139M CCCGAACGGCCGC 55 9 0.16 102 0 0 0 0 0 DYNC2LI1 51626 mdanderson.org 37 2 44028793 44028793 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001193464 exon10 c.G750T p.V250V ATGTGTGGATCAG 48 3 0.06 63 0 0 28 0 0.00 SMYD1 150572 mdanderson.org 37 2 88367450 88367450 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_198274 exon1 c.G67T p.A23S CTGAAGGCCACCA 74 4 0.05 137 0 0 0 0 CNPPD1 27013 mdanderson.org 37 2 220040955 220040955 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_015680 exon2 c.C168A p.S56R CACCGGGCTGGAG 47 3 0.06 57 0 0 32 0 0.00 CHGB 1114 mdanderson.org 37 20 5903989 5903989 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001819 exon4 c.G1199T p.G400V CACATGGATATGG 16 3 0.19 30 0 0 2 0 0.00 ADAMTS5 11096 broad.mit.edu;mdanderson.org 37 21 28296507 28296507 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . ADAMTS5 NM_007038 exon8 c.C2658A p.A886A AGAGCAGGCGAGC 80 4 0.05 83 0 0 184 0 0 OSBP2 23762 mdanderson.org 37 22 31091149 31091149 + Nonsense_Mutation SNP G G T rs375188093 alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_030758 exon1 c.G253T p.E85X GTGTCCGAGACGA 37 3 0.08 79 0 0 0 0 SOX10 6663 mdanderson.org 37 22 38369790 38369790 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_006941 exon4 c.C1113A p.D371E TGGCTGGTCGGTG 32 3 0.09 50 0 0 0 0 DDX17 10521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 38895499 38895499 + Missense_Mutation SNP C C G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_006386 exon3 c.G444C p.E148D ATCAACCTCATAC 105 18 0.17 98 0 0 7 0 0.00 FBLN1 2192 mdanderson.org 37 22 45958794 45958794 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001996 exon15 c.G1700A p.R567H GCAGCCGCTGTGA 28 3 0.11 38 0 0 325 0 0.00 SLC51A 200931 mdanderson.org 37 3 195955103 195955103 + Nonsense_Mutation SNP C C A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_152672 exon5 c.C480A p.C160X CCCCTGCTGCTGC 29 3 0.10 32 0 0 1 0 0.00 PPA2 27068 mdanderson.org 37 4 106367654 106367654 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_176869 exon5 c.C327A p.A109A CTTGGTGGCAATC 20 2 0.10 46 0 0 3 0 0.00 PDZD2 23037 mdanderson.org 37 5 32098697 32098697 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_178140 exon22 c.G8175T p.K2725N TGGGAAGGGTTTG 48 3 0.06 49 0 0 3 0 0.00 CCNO 10309 mdanderson.org 37 5 54528990 54528990 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_021147 exon1 c.C362A p.A121E GCCAGCGCCTCCC 20 2 0.10 26 0 0 1 0 0.00 ADAMTS2 9509 mdanderson.org 37 5 178564813 178564813 + Missense_Mutation SNP G G T rs1862211 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_014244 exon12 c.C1908A p.H636Q GTCGCCGTGCTCG 22 2 0.09 31 0 0 0 0 SLC25A27 9481 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 46621035 46621035 + Splice_Site SNP G G C novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . SLC25A27 NM_001204051 exon1 c.G106C p.A36P GAGCTAGGTACCC 23 5 0.22 33 0 0 22 0 0 ELOVL4 6785 mdanderson.org 37 6 80656990 80656990 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_022726 exon1 c.C7A p.L3I CCAGGAGCCCCAT 27 3 0.11 42 0 0 0 0 MMS22L 253714 mdanderson.org 37 6 97702453 97702453 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_198468 exon10 c.C1099A p.H367N CTCCATGGCGATC 51 3 0.06 52 0 0 1 0 0.00 EPB41L2 2037 mdanderson.org 37 6 131191163 131191163 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001431 exon15 c.C2147A p.P716H CTCCCAGGTGATA 48 3 0.06 29 0 0 35 0 0.00 HGC6.3 0 broad.mit.edu 37 6 168376821 168376821 + RNA SNP T T C novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001129895 exon1 c.A512G p.E171G GGTCACTCCCCCT 176 4 0.02 191 0 0 47 1 0.02 TNRC18 84629 mdanderson.org 37 7 5352833 5352833 + Silent SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001080495 exon27 c.C7689T p.S2563S ACTACTGCTGCTG 28 3 0.11 39 1 0.0256410256 23 0 0.00 CCT6P1 0 broad.mit.edu 37 7 65226641 65226641 + RNA SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . . . . . TCTTGCGCAGAAT 92 5 0.05 76 1 0.0131578947 24 0 0.00 RBM33 155435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 155556646 155556646 + Silent SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_053043 exon15 c.G3120T p.G1040G AGCGGGGCCCCAC 101 23 0.23 182 0 0 5 1 0.20 MAPK15 225689 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 144804021 144804021 + Missense_Mutation SNP G G A rs376274608 TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . MAPK15 NM_139021 exon13 c.G1429A p.G477S CGGGGCGGTGGGG 39 11 0.28 38 1 0.0263157895 32 1 0 0.00 BICD2 23299 broad.mit.edu;mdanderson.org 37 9 95477707 95477707 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 BICD2,NS,carcinoma,0,1 BICD2 NM_001003800 exon7 c.G2297A p.R766Q AGCTGCCGCTGCA 82 4 0.05 118 0 0 68 1 0 0 PPP3R2 5535 mdanderson.org 37 9 104357065 104357065 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 PPP3R2,caecum,carcinoma,+2,1 PPP3R2 NM_147180 exon1 c.C148T p.P50S GCTCCGGCAGGGA 37 3 0.08 63 0 0 2 1 0 0 CRB2 286204 broad.mit.edu 37 9 126132724 126132724 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . CRB2 NM_173689 exon7 c.G1392T p.R464S ACTGAGGTTTCGC 53 3 0.06 84 0 0 86 2 0 0.00 SCAI 286205 broad.mit.edu 37 9 127783012 127783012 + Silent SNP T T G novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . SCAI NM_173690 exon8 c.A618C p.A206A AAATCTTGCATAA 206 6 0.03 208 0 0 84 0 0 ACOT9 23597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 23740077 23740077 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001037171 exon8 c.C509T p.P170L TGTTCTGGGCTCA 67 19 0.28 72 0 0 12 4 0.33 SLC6A14 11254 mdanderson.org 37 X 115568988 115568988 + Missense_Mutation SNP G G T rs61740723 alternate_allele TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_007231 exon2 c.G79T p.V27F TTCCATGTTGGTG 43 3 0.07 41 0 0 0 0 FAM3A 60343 mdanderson.org 37 X 153736636 153736636 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0B-01A-11D-A435-10 TCGA-ZM-AA0B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 084a80d6-bc9b-40e7-8964-49d8f56e651f c4912418-4a95-409b-8512-ac4c94533b97 . . NM_001171134 exon5 c.C318A p.N106K GGCGATGTTCAGC 11 2 0.18 8 0 0 31 0 0.00