Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SLC35E2B 728661 mdanderson.org 37 1 1601537 1601537 + Nonsense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001110781 exon6 c.C761A p.S254X ACTTACGAGAACC 44 3 0.07 52 0 0 21 0 0.00 KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 10394661 10394661 + Missense_Mutation SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_015074 exon26 c.G2870A p.R957Q AAGTGCGGGGATT 73 16 0.22 75 0 0 9 1 0.11 CROCC 9696 broad.mit.edu 37 1 17272075 17272075 + Missense_Mutation SNP G G A rs2781608 bycluster;by1000genomes TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 CROCC,NS,carcinoma,0,10 CROCC NM_014675 exon15 c.G2110A p.A704T GAGAAGGCCGAGG 81 4 0.05 73 1 0.0136986301 185 10 17 1 0.06 CDCP2 200008 mdanderson.org 37 1 54618525 54618525 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_201546 exon1 c.C71A p.A24D TCCATGGCTTGGG 80 4 0.05 88 0 0 0 0 PGBD2 267002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 249211094 249211094 + Missense_Mutation SNP C C G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_170725 exon3 c.C311G p.A104G AGAAAGCAGTTGT 65 18 0.28 52 0 0 30 14 0.47 KIAA1279 26128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70760227 70760227 + Silent SNP A A C novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_015634 exon2 c.A474C p.A158A AACTGCACAGGCT 33 11 0.33 27 0 0 27 14 0.52 EXOSC1 51013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 99205531 99205531 + Silent SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_016046 exon2 c.G105A p.S35S AAGCGACGAAAAG 39 11 0.28 50 0 0 74 31 0.42 BRSK2 9024 mdanderson.org 37 11 1467102 1467102 + Silent SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001256630 exon12 c.G1329T p.A443A GCCTGCGCGGCGG 43 3 0.07 51 0 0 3 0 0.00 HARBI1 283254 mdanderson.org 37 11 46637619 46637619 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_173811 exon2 c.C169A p.L57I TAGAAAGATTCGC 41 3 0.07 53 0 0 7 0 0.00 CKAP5 9793 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 46819368 46819368 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001008938 exon11 c.C1325A p.A442D AGTGCAGCACAAA 114 7 0.06 151 0 0 31 3 0.10 PGR 5241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 100933354 100933354 + Missense_Mutation SNP T T A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_000926 exon4 c.A2036T p.Q679L ATGTCTTGACCTG 102 12 0.12 123 0 0 0 0 MLL2 8085 hgsc.bcm.edu;mdanderson.org 37 12 49427679 49427679 + Silent SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 MLL2_ENST00000301067,NS,carcinoma,0,2 MLL2_ENST00000301067 NM_003482 exon39 c.G10809A p.Q3603Q CTGCTGCTGTTGT 31 3 0.10 26 0 0 0 2 17 0 0.00 ASIC1 41 mdanderson.org 37 12 50452708 50452708 + Silent SNP C C A rs653576 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_020039 exon2 c.C159A p.S53S GGGCTCCCTGGCT 62 2 0.03 48 0 0 4 0 0.00 CALCOCO1 57658 hgsc.bcm.edu 37 12 54115831 54115831 + Missense_Mutation SNP G G T rs146731373 bycluster;alternate_allele TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 CALCOCO1,NS,carcinoma,0,1 CALCOCO1 NM_020898 exon5 c.C587A p.T196K AGCTCCGTGTGCT 45 2 0.04 43 0 0 0 1 64 0 0.00 MMP17 4326 mdanderson.org 37 12 132326266 132326266 + Silent SNP G G A rs141989989 bycluster;by1000genomes TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_016155 exon5 c.G804A p.P268P GCGGCCGTACTAC 40 3 0.08 55 0 0 0.001 3 0 0.00 ULK1 8408 mdanderson.org 37 12 132403798 132403798 + Silent SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_003565 exon24 c.G2553A p.L851L CACGCTGCTGTTC 14 3 0.21 24 0 0 82 0 0.00 LMO7 4008 mdanderson.org 37 13 76391409 76391409 + Nonsense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_015842 exon9 c.C1360T p.Q454X AAATGGCAGGATG 16 3 0.19 18 0 0 16 0 0.00 . 0 bcgsc.ca 37 14 20138135 20138135 + RNA SNP C C T rs77023132 TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . . . . . CAATTACTCTCCA 42 18 0.43 36 8 0.2222222222 0 0 APOPT1 84334 mdanderson.org 37 14 104056568 104056568 + Missense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_032374 exon5 c.C566T p.A189V AAGTGGCCCTGGA 37 3 0.08 50 0 0 113 0 0.00 PACS2 23241 mdanderson.org 37 14 105859025 105859025 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001100913 exon23 c.G2325T p.R775S GGACAGGAAGAGG 40 3 0.08 35 0 0 57 0 0.00 LTK 4058 mdanderson.org 37 15 41800323 41800323 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_002344 exon9 c.C1193A p.A398D CATTCAGCCAGCT 46 3 0.07 32 0 0 12 0 0.00 SCAPER 49855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 76668615 76668615 + Missense_Mutation SNP C C A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_020843 exon28 c.G3743T p.R1248L ATGTGCCGGAATG 68 7 0.10 70 0 0 23 3 0.13 NTHL1 4913 mdanderson.org 37 16 2089944 2089944 + Missense_Mutation SNP G G T rs367629024 alternate_allele TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_002528 exon6 c.C920A p.P307Q GCGGCCGGGCAGA 15 2 0.13 15 0 0 28 0 0.00 MYH11 4629 mdanderson.org 37 16 15841974 15841974 + Missense_Mutation SNP C C A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 MYH11_ENST00000396324,NS,carcinoma,+1,2 MYH11_ENST00000396324 NM_001040114 exon18 c.G2131T p.V711L CCAGCACCCCATT 45 3 0.07 48 0 0 1 2 6 0 0.00 QPRT 23475 mdanderson.org 37 16 29706335 29706335 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_014298 exon2 c.G364T p.V122L GCTGCAGTGGAGG 19 2 0.11 23 0 0 137 0 0.00 RPGRIP1L 23322 hgsc.bcm.edu 37 16 53682980 53682980 + Silent SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001127897 exon16 c.C2200A p.R734R TTAATCGGAACCA 88 4 0.05 114 0 0 2 0 0.00 EFCAB13 124989 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 17 45438806 45438806 + Missense_Mutation SNP G G A rs377500863 TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_152347 exon10 c.G724A p.V242M GATGACGTGTTTG 151 8 0.05 142 0 0 0 0 CLTC 1213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 57721790 57721790 + Missense_Mutation SNP A A G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_004859 exon2 c.A196G p.I66V AGACCAATTTCAG 125 33 0.26 106 0 0 99 22 0.22 EPG5 57724 mdanderson.org 37 18 43469833 43469833 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_020964 exon28 c.C4882A p.Q1628K CTGCTTGCAACTG 41 3 0.07 59 0 0 8 0 0.00 FBN3 84467 mdanderson.org 37 19 8148193 8148193 + Missense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_032447 exon56 c.G7151A p.G2384D AAGGAGCCAAGGC 39 3 0.08 32 0 0 71 0 0.00 ZNF799 90576 ucsc.edu 37 19 12501560 12501560 + Missense_Mutation SNP T T C novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . ZNF799 NM_001080821 exon4 c.A1652G p.E551G ATTCTTTCATGTC 183 3 0.02 161 1 0.0062111801 111 30 6 0.20 rescued with RNA-seq CYP4F8 11283 broad.mit.edu 37 19 15726774 15726775 + RNA DEL CC CC - novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . CYP4F8 . . . . TCCTCTCCTCACT 18 5 0.28 10 0 0 64 0 0 SCAF1 58506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50148669 50148669 + Splice_Site SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 SCAF1,NS,carcinoma,0,1 SCAF1 NM_021228 exon3 c.166+1G>A . ATAAAGGTATGGC 163 31 0.19 125 0 0 0 1 0 0 ZNF628 89887 mdanderson.org 37 19 55995616 55995616 + Missense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_033113 exon3 c.C3056T p.P1019L GGGCTCCAGCCTC 34 3 0.09 38 0 0 16 0 0.00 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32667481 32667481 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_016252 exon19 c.G4196T p.S1399I GACGAAGTATAGC 90 9 0.10 57 0 0 4 0 0.00 GPR39 2863 hgsc.bcm.edu 37 2 133175021 133175021 + Missense_Mutation SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 GPR39,NS,carcinoma,0,1 GPR39 NM_001508 exon1 c.G406A p.A136T TACATCGCCATCT 74 3 0.04 62 0 0 0 1 5 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29628233 29628233 + Missense_Mutation SNP A A G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . FRG1B . . . . GGGAAAATGGCTT 383 18 0.05 301 3 0.0099667774 181 78 0 0.00 ZNF341 84905 mdanderson.org 37 20 32333094 32333094 + Missense_Mutation SNP G G T rs373744673 alternate_allele TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_032819 exon3 c.G328T p.A110S ACTCCTGCCAATC 40 3 0.08 51 0 0 5 0 0.00 BAGE2 85319 broad.mit.edu 37 21 11058282 11058282 + RNA SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_182482 exon3 c.C158T p.A53V TTCACAGCATTTG 185 6 0.03 135 2 0.0148148148 1 0 0.00 . 0 broad.mit.edu 37 22 18843462 18843462 + RNA DEL G G - novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . . . . . GGACAAGGGGCCA 108 28 0.26 60 6 0.1 0 0 TMEM175 84286 mdanderson.org 37 4 947055 947055 + Silent SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_032326 exon8 c.G540T p.L180L GGCTCTGTACCGA 41 3 0.07 66 0 0 29 0 0.00 DSPP 1834 ucsc.edu 37 4 88536880 88536880 + Silent SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . DSPP NM_014208 exon5 c.C3066T p.S1022S CAGCAGCAATAGC 44 4 0.09 63 1 0.0158730159 174 0 0 HERC5 51191 broad.mit.edu;bcgsc.ca 37 4 89388236 89388236 + Missense_Mutation SNP A A G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . HERC5 NM_016323 exon7 c.A938G p.D313G TTTCTGATTTGGG 83 6 0.07 117 1 0.0085470085 114 33 1 0.03 MEGF10 84466 mdanderson.org 37 5 126753482 126753482 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 MEGF10,NS,adenocarcinoma,-1,1 MEGF10 NM_001256545 exon10 c.G1283T p.C428F GAAAGTGCACCTG 39 3 0.08 52 0 0 -1 1 3 0 0.00 PCDHB4 56131 hgsc.bcm.edu 37 5 140503155 140503155 + Silent SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 PCDHB4,caecum,carcinoma,+1,1 PCDHB4 NM_018938 exon1 c.G1575T p.A525A GCAGGCGTTCGAG 33 4 0.12 40 2 0.05 1 1 0 0 GABRA1 2554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161277838 161277838 + Missense_Mutation SNP T T C novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001127643 exon3 c.T22C p.S8P GGTCTGTCTGACT 53 8 0.15 69 0 0 0 0 PPARD 5467 mdanderson.org 37 6 35391795 35391795 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001171818 exon7 c.G497T p.S166I AGGGGAGCCAGTA 38 3 0.08 34 0 0 26 0 0.00 TAAR9 134860 broad.mit.edu 37 6 132860291 132860291 + RNA SNP C C A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . . . . . TTATAACTCCTCC 99 4 0.04 76 0 0 0 0 SNX9 51429 bcgsc.ca;mdanderson.org 37 6 158296192 158296192 + Missense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . SNX9 NM_016224 exon4 c.C284T p.A95V CGGCTGCCAGCAA 104 5 0.05 95 0 0 43 55 0 0.00 DACT2 168002 mdanderson.org 37 6 168711949 168711949 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_214462 exon2 c.C262A p.Q88K TGTCCTGTTGTCT 28 3 0.11 29 0 0 13 0 0.00 AP5Z1 9907 mdanderson.org 37 7 4828510 4828510 + Silent SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 KIAA0415_ENST00000450194,NS,carcinoma,+1,2 KIAA0415_ENST00000450194 NM_014855 exon13 c.C1635T p.G545G GGCCGGCTGTGCC 35 3 0.09 32 0 0 1 2 42 0 0.00 RADIL 55698 mdanderson.org 37 7 4876055 4876055 + Missense_Mutation SNP G G T rs200447001 bycluster;by1000genomes TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_018059 exon3 c.C717A p.D239E CATGGCGTCGGGG 45 3 0.07 39 0 0 0.001 12 0 0.00 TWIST1 7291 mdanderson.org 37 7 19156362 19156362 + Missense_Mutation SNP C C T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_000474 exon1 c.G583A p.A195T ACCAGGCCCCCTC 37 3 0.08 40 0 0 76 0 0.00 DPY19L2P2 0 broad.mit.edu 37 7 102883750 102883750 + RNA DEL T T - novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . . . . . ACATAATTTTTTT 11 4 0.36 4 0 0 0 0 KCNH2 3757 mdanderson.org 37 7 150644785 150644785 + Missense_Mutation SNP G G T novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_000238 exon12 c.C2874A p.F958L GCTGGAGAAGGGC 40 3 0.08 54 1 0.0185185185 4 0 0.00 TNKS 8658 mdanderson.org 37 8 9627763 9627763 + Silent SNP A A G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_003747 exon26 c.A3888G p.R1296R CTACAGAGGAGAA 39 3 0.08 41 0 0 24 0 0.00 MLLT3 4300 hgsc.bcm.edu 37 9 20414373 20414373 + Silent SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 MLLT3,NS,carcinoma,0,4 MLLT3 NM_004529 exon5 c.C471T p.S157S GCTGCTGCTACTG 47 4 0.09 33 2 0.0606060606 0 4 2 0 0.00 PRSS3 5646 broad.mit.edu 37 9 33794809 33794809 + Missense_Mutation SNP G G A rs201061108 TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . PRSS3 NM_001197097 exon2 c.G20A p.S7N AGACAAGTGGCTT 61 7 0.11 44 0 0 79 0 0 LOC100132077 0 broad.mit.edu 37 9 97109268 97109275 + RNA DEL AAAAAAGA AAAAAAGA - rs371617960 bycluster;alternate_allele TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 AAAAAAGA AAAAAAGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . . . . . AAAAAGAAAAAAG 6 2 0.33 8 0 0 0 0 CYTB 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 15765 15765 + Missense_Mutation SNP G G A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . ENST00000361789 exon1 c.G1019A p.G340E TCGGAGGACAACC 12 10 0.83 23 0 0 0 0 SYTL4 94121 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 99945112 99945112 + Missense_Mutation SNP C C A novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 . . NM_001129896 exon9 c.G768T p.M256I AAATATCATCTCA 171 12 0.07 130 0 0 3 0 0.00 NBPF9 400818 hgsc.bcm.edu 37 1 144813815 144813815 + Silent SNP A A G novel TCGA-YU-AA61-01A-11D-A435-10 TCGA-YU-AA61-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a045392a-1a5d-4642-8bd1-f1671db2fd63 1a30d3c6-2e38-4057-b0a9-4509f5a563a4 NBPF9_ENST00000338347,NS,carcinoma,0,5 NBPF9_ENST00000338347 . . . . GCTTGCAGAGCAG 14 5 0.36 14 2 0.1428571429 0 5 8 0 0.00