Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SDHB 6390 hgsc.bcm.edu 37 1 17371263 17371263 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_003000 exon2 c.C193A p.L65I TATTAAGGTCAAC 92 4 0.04 81 0 0 158 0 0.00 EVI5 7813 broad.mit.edu 37 1 92979095 92979124 + Splice_Site DEL TATATATATATATATATATATATATATATG TATATATATATATATATATATATATATATG - novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 TATATATATATATATATATATATATATATG TATATATATATATATATATATATATATATG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . EVI5 . . . . TATATATATATAT 37 33 0.89 15 0 0 94 0 0 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 115258748 115258748 + Missense_Mutation SNP C C T rs121913250 bycluster TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 NRAS,NS,haematopoietic_neoplasm,+1,861 NRAS NM_002524 exon2 c.G34A p.G12S CACCACCTGCTCC 196 30 0.15 208 0 0 1 861 50 16 0.32 OBSCN 84033 hgsc.bcm.edu 37 1 228456342 228456342 + Missense_Mutation SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 OBSCN_ENST00000570156,NS,carcinoma,-1,8 OBSCN_ENST00000570156 NM_001271223 exon19 c.C5525T p.T1842M AGGTGACGTGGTA 98 4 0.04 102 0 0 -1 8 1 0 0.00 SMYD3 64754 mdanderson.org 37 1 246670511 246670511 + Silent SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001167740 exon1 c.G9A p.P3P CTTCAGCGGCTCC 76 4 0.05 51 0 0 16 0 0.00 C11orf16 56673 mdanderson.org 37 11 8947472 8947472 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_020643 exon5 c.C742A p.P248T TGATTGGCCCTAG 38 3 0.08 80 0 0 0 0 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . GGTGCAGCATGCC 24 11 0.46 22 0 0 0 0 ATG2A 23130 mdanderson.org 37 11 64678133 64678133 + Silent SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_015104 exon12 c.C1662A p.P554P GGCGCAGGGCCGA 29 3 0.10 27 0 0 58 0 0.00 B3GNT1 11041 mdanderson.org 37 11 66114323 66114323 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_006876 exon1 c.C694A p.P232T CGCTGGGCACCAT 44 3 0.07 66 0 0 31 0 0.00 GRIN2B 2904 mdanderson.org 37 12 13716591 13716591 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 GRIN2B,NS,carcinoma,-1,1 GRIN2B NM_000834 exon13 c.C3581A p.P1194H GGTGCAGGTACCC 43 3 0.07 41 0 0 -1 1 0 0 SMARCD1 6602 hgsc.bcm.edu 37 12 50492743 50492743 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_003076 exon13 c.G1508T p.R503L AGAGACGACAAGA 96 4 0.04 83 0 0 262 0 0.00 AAAS 8086 broad.mit.edu;bcgsc.ca 37 12 53702803 53702804 + Splice_Site DEL CT CT - novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 CT CT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . AAAS NM_015665 exon10 c.936_937del p.312_313del CCCAGACTCTGAG 72 9 0.13 62 0 0 46 159 0 0.00 TIMELESS 8914 broad.mit.edu 37 12 56817448 56817448 + Silent SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 TIMELESS,NS,carcinoma,0,1 TIMELESS NM_003920 exon17 c.G2010A p.E670E CTCCTCCTCTTCT 97 4 0.04 66 1 0.0151515152 107 1 121 1 0.01 POC1B 282809 mdanderson.org 37 12 89885738 89885738 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_172240 exon4 c.C427A p.H143N GTGTATGTCGATA 71 4 0.06 46 0 0 6 0 0.00 CHFR 55743 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 133424713 133424713 + Silent SNP G G A rs372404283 TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001161344 exon14 c.C1641T p.D547D CACGCCGTCCAGA 135 6 0.04 109 0 0 54 1 0.02 MTMR6 9107 mdanderson.org 37 13 25840300 25840300 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_004685 exon4 c.C429A p.H143Q CTGCCAGTGTGAG 41 3 0.07 62 0 0 9 0 0.00 FARP1 10160 mdanderson.org 37 13 99093031 99093031 + Missense_Mutation SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_005766 exon24 c.C2737T p.H913Y ATGGTGCACGTGT 36 3 0.08 49 0 0 25 0 0.00 TMEM55B 90809 mdanderson.org 37 14 20928916 20928916 + Silent SNP C C A rs149796661 alternate_allele TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 TMEM55B,NS,carcinoma,-2,1 TMEM55B NM_001100814 exon2 c.G252T p.G84G GGCACTCCCACTG 42 3 0.07 50 0 0 -2 1 63 0 0.00 LOC727924 0 broad.mit.edu 37 15 22332213 22332214 + RNA INS - - A rs144162914 bycluster;by1000genomes TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . TCAATATAAGACT 6 2 0.33 6 0 0 1 0 0.00 GOLGA8DP 0 broad.mit.edu 37 15 22709885 22709885 + RNA DEL G G - novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . TAATGTGGGGGGG 12 6 0.50 9 0 0 0 0 LRRK1 79705 mdanderson.org 37 15 101593438 101593438 + Silent SNP G G A novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_024652 exon26 c.G3867A p.L1289L CATGCTGAGGCAC 11 2 0.18 18 0 0 0 0 COG7 91949 broad.mit.edu 37 16 23415150 23415150 + Silent SNP T T C novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . COG7 NM_153603 exon13 c.A1668G p.K556K TGACCCTTTTTCC 66 3 0.05 94 0 0 62 26 0 0.00 RRAD 6236 mdanderson.org 37 16 66956208 66956208 + Nonsense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_004165 exon5 c.C698A p.S233X GCCGCTGATGTCT 39 3 0.08 56 0 0 14 0 0.00 LOC283922 0 broad.mit.edu;bcgsc.ca 37 16 74372644 74372644 + RNA SNP A A G rs2549260 bycluster TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . CTTGTCAGGGGGA 85 8 0.09 78 2 0.0256410256 0 0 PIEZO1 9780 broad.mit.edu 37 16 88800398 88800398 + Missense_Mutation SNP G G C rs62639697 byfrequency TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . PIEZO1 NM_001142864 exon17 c.C2245G p.Q749E CCTCCTGCTGCTG 61 3 0.05 61 1 0.0163934426 79 23 0 0.00 . 0 broad.mit.edu;ucsc.edu 37 16 90162556 90162556 + RNA SNP G G A novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 ENSG00000196230,NS,malignant_melanoma,0,1 . . . . . ACGGCCGAGGAGG 40 13 0.33 45 0 0 1 9 5 0.56 SUZ12P1 0 broad.mit.edu 37 17 29061588 29061588 + RNA DEL A A - novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . TAAATTAAGCTAA 8 4 0.50 5 0 0 0 0 KRTAP4-4 84616 mdanderson.org 37 17 39316640 39316640 + Missense_Mutation SNP G G T rs73983195 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 KRTAP4-4,colon,carcinoma,0,1 KRTAP4-4 NM_032524 exon1 c.C304A p.R102S TGGGGCGGCAGCA 45 3 0.07 52 0 0 0 1 0 0 ATP6V0A1 535 hgsc.bcm.edu 37 17 40653235 40653235 + Silent SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001130020 exon17 c.G1938T p.L646L TTTCCTGGTAGTG 95 5 0.05 101 0 0 41 0 0.00 COA3 28958 broad.mit.edu 37 17 40950543 40950543 + Silent SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001040431 exon1 c.C157A p.R53R TTCGCCGCCGTGG 59 3 0.05 60 0 0 74 0 0.00 . 0 broad.mit.edu 37 17 58511460 58511461 + RNA INS - - T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . ACCAACGTTTTTT 6 2 0.33 15 0 0 5 0 0.00 ZNF397 84307 mdanderson.org 37 18 32825534 32825534 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001135178 exon4 c.G865T p.V289L TGTGATGTATGTG 51 3 0.06 95 0 0 47 0 0.00 NANOS3 342977 mdanderson.org 37 19 13988167 13988167 + Silent SNP G G A novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001098622 exon1 c.G105A p.E35E GCCAGAGCCAGAG 29 3 0.10 30 0 0 916 0 0.00 CCDC141 285025 mdanderson.org 37 2 179702468 179702468 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_173648 exon23 c.C3478A p.Q1160K GCACCTGCCCCTT 69 5 0.07 74 0 0 0 0 NFATC2 4773 mdanderson.org 37 20 50049078 50049078 + Missense_Mutation SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 NFATC2,colon,carcinoma,0,1 NFATC2 NM_012340 exon9 c.G2248A p.V750I AGAGTACGGCCGC 32 3 0.09 40 0 0 0 1 0 0 ZNF831 128611 mdanderson.org 37 20 57767022 57767022 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_178457 exon1 c.G948T p.Q316H CCTGCAGCGGCAG 21 3 0.14 26 0 0 0 0 STMN3 50861 mdanderson.org 37 20 62275591 62275591 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_015894 exon2 c.C91A p.P31T TATTGGGGTGCGG 18 2 0.11 35 0 0 34 0 0.00 SON 6651 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 21 34923420 34923420 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_032195 exon3 c.G1883T p.G628V CAACAGGGGTGCT 105 7 0.07 65 0 0 104 1 0.01 CBS 875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 44485607 44485607 + Missense_Mutation SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_000071 exon7 c.G556A p.A186T TCTCAGCCCCCAG 103 24 0.23 76 0 0 5 2 0.40 KRTAP10-10 353333 hgsc.bcm.edu 37 21 46057832 46057832 + Silent SNP T T A rs149762795 bycluster;byfrequency;by1000genomes TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 KRTAP10-10,NS,carcinoma,0,1 KRTAP10-10 NM_181688 exon1 c.T498A p.T166T TTCCACTTCATGC 70 5 0.07 41 0 0 0.007 0 1 0 0 POM121L4P 266697 ucsc.edu 37 22 21044345 21044345 + Silent SNP T T C rs372189549 TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . POM121L4P . . . . AGGAGCTGGGAGT 28 7 0.25 22 4 0.1818181818 3 0 0 DZIP3 9666 bcgsc.ca;mdanderson.org 37 3 108392975 108392975 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . DZIP3 NM_014648 exon24 c.G2640T p.Q880H AGAGCAGACTGAA 68 5 0.07 81 0 0 111 84 0 0.00 MUC4 4585 mdanderson.org 37 3 195510780 195510780 + Silent SNP G G A rs77303944 bycluster;byfrequency TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_018406 exon2 c.C7671T p.H2557H GGTGGCGTGACCT 167 16 0.10 220 3 0.0136363636 0.009 5 0 0.00 SH3TC1 54436 mdanderson.org 37 4 8226907 8226907 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_018986 exon11 c.G1249T p.V417L GACTCAGTAGAGG 50 3 0.06 69 0 0 15 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G C rs121913506 bycluster TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446C p.D816H GCCAGAGACATCA 80 28 0.35 63 0 0 0 932 253 102 0.40 CCDC158 339965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 77290777 77290777 + Splice_Site SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 CCDC158,NS,carcinoma,0,1 CCDC158 NM_001042784 exon11 c.1150-1G>A . ATCAGCCTAAAAA 79 18 0.23 82 0 0 0 1 0 0 DMGDH 29958 mdanderson.org 37 5 78328619 78328619 + Silent SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_013391 exon9 c.C1408A p.R470R TGACTCGTTGAGT 49 3 0.06 73 0 0 2 0 0.00 MUC21 394263 broad.mit.edu 37 6 30954534 30954534 + Silent SNP T T A novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 MUC21,NS,carcinoma,0,3 MUC21 NM_001010909 exon2 c.T582A p.T194T CAGCACTGCCACC 54 4 0.07 52 1 0.0192307692 98 3 2 0 0.00 GPR6 2830 mdanderson.org 37 6 110300885 110300885 + Silent SNP C C A novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_005284 exon1 c.C570A p.A190A GCTTGCCGCCACT 39 3 0.08 37 0 0 0 0 POM121 9883 broad.mit.edu;mdanderson.org 37 7 72418901 72418901 + Silent SNP G G A rs201837093 bycluster TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . POM121 NM_001257190 exon16 c.G2892A p.P964P CAGCCCGAGGAAG 61 8 0.13 53 0 0 131 8 1 0.13 PRKAR2B 5577 broad.mit.edu;mdanderson.org 37 7 106799908 106799908 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . PRKAR2B NM_002736 exon11 c.G1138T p.A380S GTGCAAGCATTTG 128 5 0.04 80 0 0 34 37 0 0.00 PLXNA4 91584 broad.mit.edu 37 7 131849922 131849922 + Missense_Mutation SNP A A G novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . PLXNA4 NM_020911 exon23 c.T4324C p.F1442L AAGTAAACCAATT 62 3 0.05 61 0 0 873 0 0 XKR9 389668 mdanderson.org 37 8 71646414 71646414 + Missense_Mutation SNP G G T rs140733779 bycluster;alternate_allele TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 XKR9,NS,carcinoma,0,1 XKR9 NM_001011720 exon5 c.G877T p.V293F TATATTGTTAGGG 126 5 0.04 110 0 0 0 1 2 0 0.00 WISP1 8840 broad.mit.edu 37 8 134232843 134232843 + Silent SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . WISP1 NM_003882 exon3 c.C369T p.C123C GGGCTGCGTCCTG 396 6 0.02 308 0 0 64 2 0 0.00 SLC39A4 55630 mdanderson.org 37 8 145640175 145640175 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 SLC39A4_ENST00000276833,NS,carcinoma,+1,2 SLC39A4_ENST00000276833 NM_130849 exon5 c.C910A p.Q304K TCAGCTGCTGTTG 79 4 0.05 62 0 0 1 2 3 0 0.00 TMEM245 23731 mdanderson.org 37 9 111795757 111795757 + Silent SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_032012 exon17 c.C2424A p.G808G TGCCAAGCCTGTC 52 3 0.06 55 0 0 89 0 0.00 PNPLA4 8228 broad.mit.edu 37 X 7868821 7868821 + Missense_Mutation SNP A A G novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . PNPLA4 NM_004650 exon7 c.T668C p.L223P GGAAAAAGGGCTT 322 4 0.01 292 1 0.0034246575 24 37 0 0.00 REPS2 9185 mdanderson.org 37 X 17072945 17072945 + Missense_Mutation SNP C C T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_004726 exon8 c.C986T p.A329V GTGATGCTGACTG 69 4 0.06 55 0 0 1 0 0.00 SUPT20HL1 100130302 hgsc.bcm.edu 37 X 24382500 24382500 + Silent SNP T T C novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001136234 exon1 c.T1623C p.A541A TGCTGCTGCTGCT 85 10 0.12 66 0 0 0 0 FAM104B 90736 mdanderson.org 37 X 55172630 55172630 + Nonsense_Mutation SNP G G A rs113263757 bycluster TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001166700 exon3 c.C238T p.Q80X AGAACTGGGGAAA 36 3 0.08 34 1 0.0294117647 33 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172645 55172645 + Missense_Mutation SNP C C G rs1047042 bycluster;byfrequency;alternate_allele TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . NM_001166700 exon3 c.G223C p.D75H TTGCATCGGGTTC 36 3 0.08 31 1 0.0322580645 49 0 0.00 RLIM 51132 ucsc.edu 37 X 73811755 73811755 + Silent SNP T T G rs7883332 bycluster;byfrequency;by1000genomes TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . RLIM NM_183353 exon5 c.G1395C p.S465S GGAACTCGAACTG 64 8 0.13 45 9 0.2 90 31 0 0.00 TXNRD2 10587 mdanderson.org 37 22 19885565 19885565 + Missense_Mutation SNP G G T novel TCGA-YU-A90Q-01A-11D-A435-10 TCGA-YU-A90Q-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 526f0bd9-4127-4315-844c-3b0c77e5a7f4 b2156c22-0881-4a11-94c1-69b20568cc61 . . . . . . TACCTGGTCGAAG 17 3 0.18 32 0 0 18 0 0.00