Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MAN1C1 57134 mdanderson.org 37 1 25944310 25944310 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_020379 exon1 c.G22T p.G8C GTGCCCGGCTTCG 46 3 0.07 55 0 0 111 0 0.00 MAP3K6 9064 broad.mit.edu;ucsc.edu 37 1 27686379 27686379 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . MAP3K6 NM_004672 exon17 c.C2289A p.H763Q GTTGTCGTGCAAG 80 11 0.14 86 1 0.011627907 134 16 0 0.00 PRPF38B 55119 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 109242141 109242142 + Frame_Shift_Del DEL AG AG - novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 PRPF38B,colon,carcinoma,0,1 PRPF38B NM_018061 exon6 c.1139_1140del p.380_380del AGAAAAAGAGAGA 81 23 0.28 94 0 0 55 193 0 0.00 NBPF16 728936 hgsc.bcm.edu 37 1 148579688 148579688 + Silent SNP C C G rs202153254 bycluster TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 NBPF15,face,carcinoma,+2,1 NBPF15 NM_001102663 exon3 c.C258G p.L86L GCAGCTCAAGCAA 32 4 0.13 33 0 0 0.001 2 1 8 0 0.00 TSACC 128229 broad.mit.edu 37 1 156314421 156314421 + Missense_Mutation SNP T T C rs149637850 bycluster;byfrequency;alternate_allele TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_144627 exon3 c.T85C p.S29P AAACCCTCCCCCA 75 8 0.11 91 3 0.032967033 23 0 0.00 OR6K6 128371 broad.mit.edu 37 1 158725536 158725536 + Missense_Mutation SNP T T C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . OR6K6 NM_001005184 exon1 c.T931C p.F311L GCTCCCTTTTTCA 168 4 0.02 174 0 0 81 0 0 FMN2 56776 broad.mit.edu 37 1 240371139 240371139 + Silent SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . FMN2 NM_020066 exon5 c.C3027T p.P1009P CATACCCCCTCCT 103 5 0.05 101 1 0.0099009901 451 0 0 ZNF485 220992 mdanderson.org 37 10 44112810 44112810 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_145312 exon5 c.G1319T p.C440F TGAAATGTAGTTA 16 2 0.13 33 0 0 7 0 0.00 ANK3 288 mdanderson.org 37 10 61815794 61815794 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 ANK3_ENST00000355288,NS,carcinoma,0,2 ANK3_ENST00000355288 NM_020987 exon42 c.C12687A p.S4229R GTCAGGGCTGCAA 22 3 0.14 41 0 0 0 2 17 0 0.00 JAKMIP3 282973 mdanderson.org 37 10 133955460 133955460 + Nonsense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001105521 exon10 c.C1510T p.Q504X TTCCGGCAGCTGA 34 3 0.09 44 0 0 0 0 ZNF511 118472 mdanderson.org 37 10 135123706 135123706 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_145806 exon4 c.G468T p.K156N GTTCAAGACCAGC 28 3 0.11 95 0 0 130 0 0.00 CALY 50632 mdanderson.org 37 10 135141480 135141480 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_015722 exon3 c.C175A p.P59T GGTCTGGGGAGGA 44 3 0.07 118 0 0 0 0 ARNTL 406 mdanderson.org 37 11 13407273 13407273 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001178 exon19 c.G1652T p.G551V CCAGTGGCCTACT 43 3 0.07 47 0 0 30 0 0.00 NRXN2 9379 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 64375421 64375421 + Silent SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_015080 exon23 c.G4386A p.T1462T GGGCAGCGTGTCT 14 13 0.93 8 0 0 1 1 1.00 ATG2A 23130 mdanderson.org 37 11 64680578 64680578 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_015104 exon6 c.G757A p.G253S AGCTGCCGATCTG 41 3 0.07 59 0 0 14 0 0.00 KLHL35 283212 mdanderson.org 37 11 75139524 75139524 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001039548 exon2 c.C1029A p.F343L GGCGGCGAATTCT 16 3 0.19 21 0 0 25 0 0.00 NAALAD2 10003 broad.mit.edu;mdanderson.org 37 11 89891357 89891357 + Nonsense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 NAALAD2,NS,carcinoma,0,2 NAALAD2 NM_005467 exon7 c.C841T p.R281X ATCCCCCGAATAC 88 4 0.05 99 0 0 113 2 28 0 0.00 FAT3 120114 mdanderson.org 37 11 92616362 92616362 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001008781 exon23 c.G12740T p.S4247I CCAGGAGCAACCT 33 3 0.09 48 0 0 0 0 MLL 4297 broad.mit.edu 37 11 118391583 118391583 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . MLL NM_001197104 exon34 c.G11496T p.E3832D TAAGGAGGCAGTT 262 5 0.02 373 0 0 548 13 0 0.00 CEP290 80184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 88524340 88524340 + Missense_Mutation SNP G G C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_025114 exon8 c.C498G p.N166K ACGTTTGTTCTAC 65 14 0.22 51 0 0 1 0 0.00 MIR548F5 100302239 mdanderson.org 37 13 36050879 36050879 + RNA SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . CAGGCGGGCGGCC 47 3 0.06 96 0 0 0 0 NDFIP2 54602 mdanderson.org 37 13 80055401 80055401 + Silent SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_019080 exon1 c.C63T p.R21R CGCGCGCGGCGCC 14 2 0.14 13 0 0 1 0 0.00 . 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 106320477 106320477 + RNA SNP T T C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . CGGACATGACCAG 141 17 0.12 131 0 0 21 0 0.00 CHEK2P2 0 broad.mit.edu 37 15 20488769 20488770 + RNA DNP CA CA TG novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 CA CA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . GCACTCCAAGATT 453 13 0.03 531 0 0 25 0 0.00 WHAMMP3 0 broad.mit.edu 37 15 23200539 23200540 + RNA INS - - C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . TTATTAATTTTTT 23 8 0.35 16 0 0 0 0 CILP 8483 mdanderson.org 37 15 65496896 65496896 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_003613 exon6 c.G629A p.G210D ACCTGGCCCATTG 37 3 0.08 59 0 0 0 0 TCEB2 6923 ucsc.edu 37 16 2825543 2825543 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . TCEB2 NM_007108 exon3 c.G153A p.L51L ATCATCCAAGAGT 35 4 0.11 21 0 0 6 3290 0 0.00 NUDT16L1 84309 mdanderson.org 37 16 4743826 4743826 + Silent SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001193452 exon1 c.C99T p.Y33Y GCTGTACGCCGCC 26 3 0.12 20 0 0 80 0 0.00 PHKG2 5261 mdanderson.org 37 16 30764793 30764793 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 PHKG2_ENST00000328273,colon,carcinoma,+2,1 PHKG2_ENST00000328273 NM_001172432 exon6 c.G471T p.E157D GCCCGAGAATATT 74 4 0.05 72 0 0 2 1 210 0 0.00 ZNF646 9726 broad.mit.edu 37 16 31092943 31092943 + Silent SNP T T C rs200049061 bycluster TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . ZNF646 NM_014699 exon2 c.T5298C p.C1766C CCATTGTCCCCGC 55 32 0.58 50 22 0.44 133 62 9 0.15 . 0 bcgsc.ca 37 16 32403388 32403388 + RNA SNP C C A novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . TTGAGACATTTGA 116 5 0.04 122 0 0 0 0 MYBBP1A 10514 mdanderson.org 37 17 4443182 4443182 + Missense_Mutation SNP T T C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_014520 exon26 c.A3515G p.K1172R AATCCCTTTTTCT 23 2 0.09 25 0 0 451 0 0.00 LRRC37BP1 0 broad.mit.edu 37 17 28960991 28960991 + RNA DEL C C - rs10561703 alternate_allele TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . TTTTTTCTTTTTT 98 16 0.16 72 0 0 1 0 0.00 UBE2O 63893 mdanderson.org 37 17 74449144 74449144 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_022066 exon1 c.C80A p.A27D GCTGGGGCCGGGA 16 2 0.13 11 0 0 3 0 0.00 GALR1 2587 mdanderson.org 37 18 74962916 74962916 + Missense_Mutation SNP G G T rs375468486 alternate_allele TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001480 exon1 c.G412T p.V138L GCCATCGTGCACT 12 2 0.17 29 0 0 0 0 AKAP8L 26993 mdanderson.org 37 19 15510124 15510124 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_014371 exon9 c.C1146A p.R382R CACCATGCGGTCT 77 4 0.05 55 0 0 301 0 0.00 CAPNS1 826 mdanderson.org 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 32 4 0.13 56 2 0.0357142857 0.006 1 0 0.00 PSMC4 5704 mdanderson.org 37 19 40485823 40485823 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 PSMC4,NS,carcinoma,-1,2 PSMC4 NM_006503 exon7 c.C773T p.A258V AGAATGCACCTGC 65 4 0.06 106 0 0 -1 2 1276 1 0.00 FOXA3 3171 mdanderson.org 37 19 46375770 46375770 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_004497 exon2 c.G507T p.L169L CTCGCTGTCTTTC 36 3 0.08 68 0 0 21 0 0.00 ANKRD36 375248 hgsc.bcm.edu 37 2 97853095 97853095 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 ANKRD36_ENST00000420699,NS,carcinoma,0,4 ANKRD36_ENST00000420699 NM_001164315 exon32 c.G2100T p.S700S TGTTTCGAATATA 74 4 0.05 89 0 0 0 4 0 0 SIGLEC1 6614 mdanderson.org 37 20 3677793 3677793 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 SIGLEC1_ENST00000202578,NS,carcinoma,-2,2 SIGLEC1_ENST00000202578 NM_023068 exon9 c.C2319A p.A773A GCGGCAGGCGTAA 49 3 0.06 62 0 0 -2 2 12 0 0.00 TCEA2 6919 mdanderson.org 37 20 62701155 62701155 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_003195 exon6 c.G498T p.L166L GCGCCTGTCGGCT 44 3 0.07 48 0 0 114 0 0.00 COL6A1 1291 mdanderson.org 37 21 47421228 47421228 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 COL6A1,colon,carcinoma,0,1 COL6A1 NM_001848 exon30 c.G1884T p.L628L TGGCCTGCAGAAC 42 3 0.07 25 0 0 0 1 406 0 0.00 MN1 4330 mdanderson.org 37 22 28194894 28194894 + Silent SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_002430 exon1 c.G1638A p.Q546Q CTGCTGCTGCTGT 19 3 0.16 30 0 0 5 0 0.00 MN1 4330 broad.mit.edu 37 22 28194910 28194912 + In_Frame_Del DEL TGT TGT - novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 TGT TGT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . MN1 NM_002430 exon1 c.1620_1622del p.540_541del TGTTGCTGTTGCT 26 7 0.27 31 0 0 122 10 0 0.00 PLXNB2 23654 bcgsc.ca 37 22 50722618 50722618 + Missense_Mutation SNP G G T rs372542578 TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . PLXNB2 NM_012401 exon13 c.C2206A p.L736M GGGGCAGCGTCTC 44 4 0.09 63 0 0 172 55 0 0.00 TAMM41 132001 mdanderson.org 37 3 11871318 11871318 + Missense_Mutation SNP G G T rs144979072 bycluster;by1000genomes;alternate_allele TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_138807 exon4 c.C432A p.N144K ATCCTCGTTCACT 35 3 0.09 34 0 0 66 0 0.00 NEK10 152110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 27326130 27326130 + Missense_Mutation SNP G G C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 NEK10_ENST00000429845,NS,lymphoid_neoplasm,0,3 NEK10_ENST00000429845 NM_199347 exon23 c.C1977G p.N659K AATGTTGTTTGGT 111 27 0.24 73 0 0 0 3 1 0 0.00 BSN 8927 mdanderson.org 37 3 49691578 49691578 + Missense_Mutation SNP T T C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_003458 exon5 c.T4589C p.V1530A CTATGGTAGCCCA 45 3 0.07 50 0 0 7 0 0.00 . 0 broad.mit.edu 37 3 106824709 106824709 + RNA DEL C C - rs57565986 bycluster;alternate_allele TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . TTATATCTTTTTT 8 3 0.38 7 0 0 0 0 FAM86JP 0 broad.mit.edu 37 3 125637503 125637510 + RNA DEL AGTCTTCT AGTCTTCT - novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 AGTCTTCT AGTCTTCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . AGAGTCAGTCTTC 7 4 0.57 7 0 0 0 0 IGSF10 285313 mdanderson.org 37 3 151166918 151166918 + Missense_Mutation SNP A A G novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_178822 exon4 c.T851C p.I284T GAGTCAATGGTTG 58 3 0.05 92 0 0 0 0 TTC14 151613 mdanderson.org 37 3 180320160 180320160 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001042601 exon1 c.G111T p.S37S GGGGTCGGCCGCC 38 3 0.08 30 0 0 11 0 0.00 PAPD4 167153 mdanderson.org 37 5 78919198 78919198 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001114393 exon5 c.G351T p.M117I CTCAATGCCACCA 47 3 0.06 83 0 0 32 0 0.00 NR3C1 2908 bcgsc.ca 37 5 142779960 142779960 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . NR3C1 NM_001018077 exon2 c.G445A p.A149T GGGCAGCAGACAC 82 5 0.06 130 1 0.0076923077 124 1 0 0.00 ARHGEF37 389337 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 5 149008389 149008389 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_001001669 exon12 c.C1678T p.P560S TATGTGCCGGCTG 67 5 0.07 64 0 0 2 0 0.00 SERPINB6 5269 bcgsc.ca;mdanderson.org 37 6 2955761 2955761 + Silent SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . SERPINB6 NM_001271823 exon3 c.C366A p.L122L TACTGAGAGGAAA 78 5 0.06 67 0 0 31 380 0 0.00 TREML4 285852 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 41196569 41196569 + Missense_Mutation SNP A A T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_198153 exon2 c.A181T p.S61C TCTCCAAGTCGGT 68 23 0.34 66 0 0 0 0 ECT2L 345930 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 139175243 139175245 + In_Frame_Del DEL GAA GAA - novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 GAA GAA Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . ECT2L NM_001195037 exon9 c.1149_1151del p.383_384del GCCACTGAAGAAG 49 15 0.31 88 0 0 75 0 0 SYTL3 94120 broad.mit.edu 37 6 159183173 159183173 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . SYTL3 NM_001242384 exon17 c.G1480T p.V494L TTACCTGTGCGGC 91 4 0.04 92 0 0 49 6 0 0.00 SFRP1 6422 mdanderson.org 37 8 41166542 41166542 + Missense_Mutation SNP T T C novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_003012 exon1 c.A137G p.Y46C CTCTGGTACGGGC 38 3 0.08 18 0 0 6 0 0.00 TIGD5 84948 mdanderson.org 37 8 144681631 144681631 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_032862 exon1 c.G1558T p.A520S GCTCTGGCCTACA 50 3 0.06 33 0 0 43 0 0.00 BNC2 54796 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 9 16727865 16727865 + Missense_Mutation SNP G G A novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_017637 exon3 c.C260T p.T87M TCAGCCGTAGTCG 145 10 0.07 128 0 0 21 5 0.24 LAMC3 10319 mdanderson.org 37 9 133936593 133936593 + Missense_Mutation SNP G G A novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_006059 exon13 c.G2330A p.C777Y CCCACTGCCCCCC 21 3 0.14 21 0 0 45 0 0.00 COX3 5742 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 9607 9607 + Missense_Mutation SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . ENST00000362079 exon1 c.C401T p.T134M TAAACACATCCGT 12 12 1.00 13 0 0 0 0 ZNF81 347344 mdanderson.org 37 X 47705716 47705716 + Missense_Mutation SNP G G T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . NM_007137 exon2 c.G50T p.C17F GTGCCTGTGAGGT 39 3 0.08 27 0 0 15 0 0.00 . 0 bcgsc.ca 37 X 48136231 48136231 + RNA SNP C C T novel TCGA-XY-A8S3-01B-11D-A435-10 TCGA-XY-A8S3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3d16a6b4-e512-4c73-b4e5-3790bab36b40 4b44ec78-47bf-4365-8e9f-9d227503f3d0 . . . . . . GGTTGCCTTGAAA 393 129 0.33 314 0 0 0 0