Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf170 0 broad.mit.edu 37 1 915369 915369 + Silent SNP T T G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . C1orf170 . . . . GGCAGGTGTAGAC 83 15 0.18 99 26 0.2626262626 5 0 0 RERE 473 ucsc.edu;bcgsc.ca 37 1 8424850 8424850 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . RERE NM_012102 exon15 c.A1496G p.E499G TCCTGCTCACTGT 32 4 0.13 34 0 0 129 99 0 0.00 PHACTR4 65979 broad.mit.edu 37 1 28793239 28793239 + Silent SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . PHACTR4 NM_023923 exon5 c.T813C p.P271P TATCCCTCCCCCT 122 5 0.04 128 1 0.0078125 64 57 0 0.00 FOXD2 2306 hgsc.bcm.edu;broad.mit.edu 37 1 47905268 47905268 + Frame_Shift_Del DEL C C - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004474 exon1 c.1460delT p.V487fs CAAAGTCGCCGGC 144 13 0.09 90 0 0 1 0 0.00 FOXD2 2306 hgsc.bcm.edu;broad.mit.edu 37 1 47905271 47905272 + Frame_Shift_Ins INS - - A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004474 exon1 c.1464_1465insA p.A488fs AGTCGCCGGCCTT 155 10 0.06 98 0 0 0 0 FOXD2 2306 hgsc.bcm.edu;broad.mit.edu 37 1 47905272 47905273 + In_Frame_Ins INS - - CAAAGA novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004474 exon1 c.1465_1466insCAAAGA p.G489delinsAKS GTCGCCGGCCTTA 158 10 0.06 99 0 0 0 0 ZCCHC11 23318 broad.mit.edu 37 1 52991402 52991403 + Frame_Shift_Ins INS - - T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . ZCCHC11 NM_001009881 exon2 c.551_552insA p.I184fs CTTGGAATTTTTT 526 0 0.00 166 0 0 151 188 0 0.00 ATP1A1 476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 116940526 116940526 + Missense_Mutation SNP G G A rs200285355 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 ATP1A1,NS,carcinoma,-2,1 ATP1A1 NM_000701 exon15 c.G1990A p.V664I GCCTGCGTAGTAC 51 9 0.18 48 0 0 0.001 -2 1 1540 144 0.09 CD1C 911 broad.mit.edu 37 1 158261009 158261009 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . CD1C NM_001765 exon2 c.G147T p.W49C AGGATGGCTGGAC 174 4 0.02 198 0 0 100 1 0 0.00 ZBTB37 84614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 173839876 173839876 + Silent SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_032522 exon3 c.G513A p.K171K CCCAAAGGGAAAC 86 33 0.38 95 0 0 6 5 0.83 MIR548F1 100302192 hgsc.bcm.edu 37 1 186134395 186134395 + RNA SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . CACTAGGTATTTA 38 13 0.34 46 0 0 0 0 OBSCN 84033 broad.mit.edu 37 1 228553857 228553857 + Silent SNP C C T rs187833194 bycluster;by1000genomes TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . OBSCN NM_001271223 exon94 c.C22017T p.G7339G TGAGGGCGACCCA 214 5 0.02 197 0 0 2142 1 0 0.00 GNPAT 8443 mdanderson.org 37 1 231401776 231401776 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014236 exon7 c.G789T p.V263V TATTGTGATGGAG 47 3 0.06 43 1 0.023255814 51 0 0.00 HNRNPU-AS1 284702 hgsc.bcm.edu 37 1 245009836 245009836 + RNA SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . AAAAATAGTCCAG 104 39 0.38 80 0 0 3 3 1.00 DCLRE1C 64421 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 14976452 14976454 + In_Frame_Del DEL ACA ACA - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 ACA ACA Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001033855 exon8 c.604_606del p.202_202del AGCCACACAACAT 178 51 0.29 215 0 0 7 0 0.00 FZD8 8325 mdanderson.org 37 10 35928341 35928341 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_031866 exon1 c.C2017A p.L673M ACGTCAGGCCAGT 22 2 0.09 35 0 0 0 0 SLIT1 6585 mdanderson.org 37 10 98791382 98791382 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_003061 exon24 c.C2491A p.L831I AGCGGAGTCCCTG 42 3 0.07 65 0 0 4 0 0.00 BLOC1S2 282991 mdanderson.org 37 10 102045950 102045950 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_173809 exon2 c.G76A p.A26T CCTCAGCTGTCTC 33 3 0.09 66 0 0 106 0 0.00 SMC3 9126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 112352948 112352948 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_005445 exon18 c.C1930T p.R644C CTGGCCCGTGCTT 107 46 0.43 96 0 0 211 91 0.43 NRAP 4892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 115349537 115349537 + Missense_Mutation SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001261463 exon41 c.T4976C p.L1659S AGGTTCAAGTCTG 31 12 0.39 44 0 0 0 0 TACC2 10579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 123844801 123844801 + Missense_Mutation SNP A A T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_206862 exon4 c.A2786T p.E929V TGACAGAAGAGTC 51 16 0.31 62 0 0 0 0 MUC2 4583 mdanderson.org 37 11 1093324 1093324 + Missense_Mutation SNP G G A rs201143282 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5143A p.G1715S CCCACCGGCACAC 17 4 0.24 28 0 0 0 2 0 0 BRSK2 9024 mdanderson.org 37 11 1475738 1475738 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001256630 exon16 c.G1706T p.G569V GGTTTGGGAACTT 40 3 0.08 83 0 0 24 0 0.00 STIM1 6786 mdanderson.org 37 11 3877621 3877621 + Nonsense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_003156 exon1 c.G121T p.E41X AACTCTGAGGAGT 27 3 0.11 32 0 0 14 0 0.00 ST5 6764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 8734259 8734259 + Missense_Mutation SNP T T G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_005418 exon12 c.A2011C p.I671L ACTGGATGTGGAC 34 9 0.26 37 0 0 8 3 0.38 BDNF 627 mdanderson.org 37 11 27681195 27681195 + RNA SNP T T C rs28405820 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . TGTGTGTGCGCGC 100 6 0.06 94 1 0.0106382979 0 0 MED19 219541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57472453 57472453 + Missense_Mutation SNP T T G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_153450 exon2 c.A466C p.T156P GGCCAGTGTGGAG 34 12 0.35 48 0 0 93 53 0.57 SCGB1D2 10647 mdanderson.org 37 11 62012170 62012170 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_006551 exon3 c.G272T p.X91L GTGTGTGACATGT 50 3 0.06 46 0 0 6 0 0.00 ARAP1 116985 broad.mit.edu;mdanderson.org 37 11 72438118 72438118 + Missense_Mutation SNP T T A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . ARAP1 NM_001040118 exon3 c.A56T p.H19L TCCAGGTGCAATG 31 3 0.10 43 0 0 168 37 5 0.14 INTS4 92105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 77612564 77612564 + Missense_Mutation SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_033547 exon18 c.T2131C p.Y711H CACTGTACATGAA 132 43 0.33 136 0 0 53 26 0.49 FAT3 120114 mdanderson.org 37 11 92088566 92088566 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001008781 exon1 c.G3288T p.E1096D CGACGAGAGTGGT 52 4 0.08 47 0 0 4 0 0.00 EXPH5 23086 hgsc.bcm.edu 37 11 108384984 108384984 + Nonsense_Mutation SNP G G T rs115714924 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_015065 exon6 c.C1250A p.S417X TGGTACGATTCAT 96 4 0.04 97 0 0 0 0 TMPRSS13 84000 mdanderson.org 37 11 117772964 117772964 + Missense_Mutation SNP C C A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001077263 exon13 c.G1694T p.R565I GATTTTCTGAATC 28 3 0.11 26 0 0 1 0 0.00 DYRK4 8798 broad.mit.edu 37 12 4721824 4721824 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . DYRK4 NM_003845 exon12 c.T1261C p.F421L AATTCCTTTTTCC 208 4 0.02 94 0 0 75 171 0 0.00 GDF3 9573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 7848063 7848063 + Missense_Mutation SNP C C A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 GDF3,NS,malignant_melanoma,0,1 GDF3 NM_020634 exon1 c.G262T p.D88Y CTTGGTCTGGGAG 232 34 0.15 67 1 0.0149253731 0 1 5025 512 0.10 . 0 broad.mit.edu 37 12 40590333 40590340 + RNA DEL ACACACAG ACACACAG - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 ACACACAG ACACACAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . ACACACACACACA 25 11 0.44 13 0 0 0 0 HOXC4 3221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 54448769 54448769 + Nonsense_Mutation SNP C C A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014620 exon4 c.C575A p.S192X CCCACTCGCTGTG 145 38 0.26 119 0 0 0 0 PA2G4 5036 broad.mit.edu;mdanderson.org 37 12 56501389 56501389 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . PA2G4 NM_006191 exon5 c.G478A p.G160R AAACCTGGAAATC 57 4 0.07 27 0 0 24 1437 7 0.00 KNTC1 9735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123041970 123041970 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014708 exon17 c.C1312G p.L438V GAGAAACTGGCAT 87 21 0.24 76 0 0 52 20 0.38 RIMBP2 23504 mdanderson.org 37 12 130921452 130921452 + Missense_Mutation SNP C C A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_015347 exon10 c.G1990T p.V664L TGGACACCGGGGT 27 3 0.11 26 0 0 6 0 0.00 POLE 5426 mdanderson.org 37 12 133218311 133218311 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_006231 exon39 c.A5300G p.E1767G ATGTCCTCCAGGG 28 3 0.11 34 0 0 111 1 0.01 . 0 broad.mit.edu 37 13 52855276 52855277 + RNA DEL TG TG - rs72183844 alternate_allele TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . TGTGCTTGTGTGT 6 2 0.33 5 0 0 0 0 CUL4A 8451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 113897455 113897455 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001008895 exon11 c.C1209G p.N403K ACCCAACAAGCCT 64 18 0.28 68 0 0 108 55 0.51 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 45665475 45665475 + Missense_Mutation SNP A A T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_020937 exon21 c.A5441T p.E1814V CGCAGGAAGGAAA 128 25 0.20 131 0 0 18 0 0.00 CCDC88C 440193 mdanderson.org 37 14 91780051 91780051 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001080414 exon15 c.C2109A p.D703E CTCTGCGTCCAGC 45 3 0.07 37 0 0 39 0 0.00 SERPINA9 327657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 94933616 94933616 + Silent SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_175739 exon3 c.G786A p.E262E GAACTGCTCTTTC 68 14 0.21 73 0 0 0 0 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105415680 105415680 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_138420 exon7 c.C6108A p.L2036L AATGCTGAGGTCA 68 36 0.53 85 0 0 1 0 0.00 . 0 broad.mit.edu 37 14 106539317 106539317 + RNA SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . GAGACCTTCACTG 160 3 0.02 180 0 0 229 0 0.00 . 0 bcgsc.ca 37 15 20482111 20482111 + RNA SNP G G A rs11629632 bycluster;byhapmap;by1000genomes TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . GTTCGCGGCCACT 20 5 0.25 20 0 0 0 0 RYR3 6263 broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 33895565 33895565 + Splice_Site SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . RYR3 NM_001243996 exon18 c.G2164C p.G722R TGGTCAGGTGAGT 93 16 0.17 70 0 0 760 0 0 FAM98B 283742 bcgsc.ca 37 15 38776809 38776809 + Missense_Mutation SNP T T A rs374461368 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . FAM98B NM_173611 exon8 c.T1251A p.G417G AGGAGGTGGTGGT 109 6 0.06 80 1 0.0125 53 0 0 RASGRP1 10125 broad.mit.edu 37 15 38800149 38800149 + Nonsense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . RASGRP1 NM_001128602 exon9 c.C1020A p.Y340X TCGCCGGTAATTG 108 3 0.03 90 0 0 50 10 0 0.00 PLA2G4F 255189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42446574 42446574 + Silent SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_213600 exon3 c.C267T p.C89C GTCACTGCAGTTG 72 10 0.14 51 0 0 4 1 0.25 EID1 23741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 49170473 49170473 + Missense_Mutation SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014335 exon1 c.G100C p.G34R GAGGTAGGCAGCG 45 11 0.24 33 0 0 217 22 0.10 EEF2K 29904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 22268122 22268122 + Silent SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_013302 exon7 c.C672T p.P224P CAAGCCCCTCTTC 57 21 0.37 75 0 0 23 15 0.65 ARHGAP17 55114 mdanderson.org 37 16 24942406 24942406 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001006634 exon19 c.C2214A p.P738P TGCCATGGGGTTG 46 3 0.07 47 0 0 95 0 0.00 PRSS36 146547 mdanderson.org 37 16 31159768 31159768 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001258290 exon5 c.C501A p.F167L GTGCACGAAGCGG 9 6 0.67 8 0 0 0 0 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 72992565 72992565 + Missense_Mutation SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_006885 exon2 c.C1480G p.L494V GAAAGAGTCCTTT 79 33 0.42 85 0 0 1 0 0.00 ELAC2 60528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 12921085 12921085 + Silent SNP C C T rs370459638 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001165962 exon1 c.G180A p.L60L CACCTGCAGGTAC 53 10 0.19 46 0 0 89 32 0.36 TUBG2 27175 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 40817522 40817522 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_016437 exon7 c.G635A p.R212Q TGAACCGGATTGC 141 8 0.06 100 0 0 69 4 0.06 NMT1 4836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 43173564 43173564 + Silent SNP A A T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 NMT1,NS,carcinoma,0,1 NMT1 NM_021079 exon5 c.A507T p.L169L ACAGCTAAAAGAA 101 16 0.16 76 0 0 0 1 182 47 0.26 HEXIM1 0 broad.mit.edu 37 17 43229647 43229648 + RNA INS - - A rs141039553 bycluster;by1000genomes TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . HEXIM1 . . . . TTTATTTTTTTTT 7 5 0.71 6 0 0 25 0 0 LRRC37A2 474170 broad.mit.edu 37 17 44627781 44627781 + Splice_Site SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . LRRC37A2 NM_001006607 exon10 c.C4705T p.L1569F TTTTAGCTCAAAA 203 9 0.04 151 3 0.0198675497 37 6 0 0.00 EPN3 55040 mdanderson.org 37 17 48614207 48614207 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 EPN3,mouth,carcinoma,0,1 EPN3 NM_017957 exon2 c.G290T p.R97L AGTGCCGCGAGAA 53 3 0.06 43 0 0 0 1 1 0 0.00 SPAG9 9043 ucsc.edu 37 17 49124780 49124780 + Silent SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . SPAG9 NM_001130528 exon4 c.C546T p.L182L CCCTGAGAGCTGA 36 4 0.11 37 0 0 151 43 0 0.00 MKS1 54903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56293605 56293605 + Splice_Site SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001165927 exon5 c.232-1G>C . TTCAAACTGAGGT 40 11 0.28 35 0 0 0 0 MARCH10 162333 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 60814457 60814457 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . MARCH10 NM_001100875 exon6 c.C772A p.P258T TGGTGGGTGTGAG 168 46 0.27 180 1 0.0055555556 102 0 0 GPS1 2873 mdanderson.org 37 17 80012851 80012851 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_212492 exon5 c.G807T p.E269D TGCCGAGGTACGG 50 3 0.06 52 0 0 542 0 0.00 NAPG 8774 mdanderson.org 37 18 10526105 10526105 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 NAPG,NS,carcinoma,+2,1 NAPG NM_003826 exon1 c.G6T p.A2A GATGGCGGCTCAG 27 3 0.11 41 0 0 2 1 35 0 0.00 NEDD4L 23327 bcgsc.ca 37 18 56057876 56057876 + Splice_Site SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . NEDD4L NM_015277 exon28 c.2596-2A>G . GTTCATAGGCTGT 60 4 0.07 82 0 0 126 1 0 0.00 ZNF516 9658 broad.mit.edu 37 18 74154244 74154244 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 ZNF516,NS,carcinoma,0,2 ZNF516 NM_014643 exon3 c.C767A p.A256D CTGAAGGCCTGGC 50 6 0.12 65 0 0 102 2 15 1 0.07 POLRMT 5442 mdanderson.org 37 19 619021 619021 + Silent SNP G G T rs14155 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 POLRMT,colon,carcinoma,0,2 POLRMT NM_005035 exon15 c.C3243A p.P1081P GCGATAGGGCTGG 73 3 0.04 69 0 0 0 2 86 0 0.00 PCSK4 54760 mdanderson.org 37 19 1482101 1482101 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_017573 exon15 c.C1925T p.A642V GGCGCCGCCGTGT 12 2 0.17 12 0 0 22 0 0.00 LONP1 9361 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 5696679 5696690 + In_Frame_Del DEL ACCTCGTCGATG ACCTCGTCGATG - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 ACCTCGTCGATG ACCTCGTCGATG Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004793 exon11 c.1765_1773del p.589_591del GCACGCACCTCGT 37 10 0.27 57 0 0 5 0 0.00 ZNF358 140467 mdanderson.org 37 19 7585369 7585369 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_018083 exon2 c.C1241T p.A414V CAGCAGCGGCCGC 29 2 0.07 27 0 0 15 0 0.00 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15284960 15284960 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_000435 exon25 c.A4655G p.Q1552R ATGGCCTGGCCGT 25 9 0.36 31 0 0 63 25 0.40 . 0 bcgsc.ca 37 19 22868586 22868586 + Missense_Mutation SNP T T G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . TACACATAAGAGA 169 61 0.36 183 0 0 10 4 0.40 SLC7A9 11136 mdanderson.org 37 19 33353095 33353095 + Missense_Mutation SNP G G T rs372980958 alternate_allele TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 SLC7A9,NS,carcinoma,0,2 SLC7A9 NM_001243036 exon6 c.C633A p.F211L GCCCTCGAAAGAA 29 3 0.10 34 0 0 0 2 1 0 0.00 SIPA1L3 23094 broad.mit.edu 37 19 38684282 38684282 + Frame_Shift_Del DEL C C - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . SIPA1L3 NM_015073 exon18 c.4702delC p.P1568fs GGGCTGCCCAGCG 6 2 0.33 9 0 0 150 5 0 0.00 B3GNT8 374907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41932344 41932344 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_198540 exon3 c.G340A p.D114N GGAGGTCCTTGGG 49 23 0.47 54 0 0 3 2 0.67 ARHGAP35 2909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47422321 47422321 + Missense_Mutation SNP A A T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004491 exon1 c.A389T p.K130I CTGAAAAACTCAT 77 25 0.32 91 0 0 18 7 0.39 TRPM4 54795 mdanderson.org 37 19 49699839 49699839 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_017636 exon17 c.G2353T p.G785C TTCATGGGCAACG 12 2 0.17 13 0 0 2 0 0.00 RPL13A 23521 mdanderson.org 37 19 49994344 49994344 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_012423 exon6 c.G390T p.K130N TCTGAAGCCTACA 35 3 0.09 33 0 0 2619 0 0.00 KCNC3 3748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50826601 50826601 + Missense_Mutation SNP C C A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004977 exon2 c.G1609T p.V537F CAATGACGGGCAC 41 12 0.29 43 0 0 3 1 0.33 ACOXL 55289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 111556598 111556598 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001142807 exon7 c.C468G p.H156Q GCCCCACTGTTTC 121 24 0.20 94 0 0 64 20 0.31 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152486121 152486121 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001271208 exon68 c.G9763C p.G3255R CGTAGCCTTTCTT 94 19 0.20 77 0 0 9 4 0.44 SLC4A10 57282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162751205 162751205 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001178015 exon11 c.C1211T p.A404V ATGTTGCCTATAA 105 27 0.26 86 0 0 0 0 ABCB11 8647 mdanderson.org 37 2 169787208 169787208 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_003742 exon25 c.G3378C p.L1126F ACGTTCCAACAGC 70 5 0.07 74 0 0 0 0 DLX2 1746 broad.mit.edu 37 2 172965287 172965287 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . DLX2 NM_004405 exon3 c.C971A p.A324E GTCCCCGCGCTCA 70 3 0.04 36 0 0 29 1 0 0.00 HECW2 57520 mdanderson.org 37 2 197084819 197084819 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_020760 exon26 c.C4352A p.A1451E GTGCCTGCGATGA 47 3 0.06 38 0 0 9 0 0.00 SP140 11262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 231174675 231174675 + Nonsense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_007237 exon23 c.G2095T p.G699X CGGGACGGAGGGG 204 50 0.25 186 0 0 16 0 0.00 FAM182A 284800 hgsc.bcm.edu 37 20 26062141 26062141 + RNA SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . GGCGCAGCCCTGG 76 5 0.07 85 0 0 1 0 0.00 NECAB3 63941 mdanderson.org 37 20 32247754 32247754 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_031231 exon7 c.G580A p.G194R GGCGTCCTGCCCG 30 3 0.10 22 0 0 26 0 0.00 ZMYND8 23613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45905062 45905062 + Missense_Mutation SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 ZMYND8_ENST00000536340,NS,carcinoma,-2,2 ZMYND8_ENST00000536340 NM_183047 exon11 c.C1476G p.S492R ACCTGTGCTCTTA 37 10 0.27 28 0 0 -2 2 171 65 0.38 CYP24A1 1591 ucsc.edu;bcgsc.ca;mdanderson.org 37 20 52789455 52789455 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . CYP24A1 NM_000782 exon2 c.C442A p.L148M GGATCAGCAGCCC 43 4 0.09 53 0 0 75 0 0 BAGE2 85319 broad.mit.edu 37 21 11050075 11050077 + RNA DEL GTT GTT - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 GTT GTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . AGAAACGTTAATA 6 2 0.33 5 0 0 0 0 ANKRD30BP2 0 broad.mit.edu 37 21 14415103 14415103 + RNA SNP C C G rs369320513 bycluster TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . CAGGCTCTGCAAT 28 5 0.18 22 0 0 0 0 ANKRD30BP2 0 broad.mit.edu 37 21 14415122 14415122 + RNA SNP C C T rs373171837 bycluster TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . GGGAGGCTTGTGC 21 4 0.19 15 0 0 0 0 ITGB2 3689 mdanderson.org 37 21 46311735 46311735 + Nonsense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_000211 exon11 c.C1401A p.C467X GATGCCGCACTCC 22 2 0.09 30 0 0 151 0 0.00 ZNF280B 140883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 22842853 22842853 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_080764 exon4 c.G871C p.G291R GCTGTCCATAGTA 64 22 0.34 80 0 0 14 7 0.50 SLC2A11 66035 mdanderson.org 37 22 24224967 24224967 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_030807 exon9 c.G916T p.V306L TCCTCCGTGTTCC 43 3 0.07 44 0 0 6 0 0.00 MN1 4330 mdanderson.org 37 22 28196364 28196364 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_002430 exon1 c.C168A p.G56G GGGTTCGCCCAGC 36 3 0.08 40 0 0 16 0 0.00 CAPN7 23473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 15274030 15274030 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014296 exon10 c.T1037C p.I346T AGGTGATAATTGA 61 16 0.26 90 0 0 12 7 0.58 MLH1 4292 mdanderson.org 37 3 37050329 37050329 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_000249 exon6 c.G478T p.A160S AACATAGCCACGA 47 3 0.06 66 0 0 40 0 0.00 LAMB2 3913 mdanderson.org 37 3 49167754 49167754 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 LAMB2,NS,carcinoma,0,1 LAMB2 NM_002292 exon9 c.C1135A p.H379N TGTTATGCTGACA 124 5 0.04 86 0 0 0 1 30 0 0.00 NISCH 11188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52492745 52492745 + Missense_Mutation SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001276293 exon3 c.G245C p.R82T ACTCAAGAAGCTT 152 37 0.24 87 0 0 70 19 0.27 WFS1 7466 broad.mit.edu 37 4 6296878 6296878 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . WFS1 NM_001145853 exon7 c.G823T p.A275S GAGCTGGCGGGGA 32 3 0.09 53 0 0 71 22 0 0.00 FRYL 285527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 48597656 48597656 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_015030 exon15 c.G1199A p.R400H GTGTCACGAGGAA 203 75 0.37 253 0 0 11 4 0.36 NIPBL 25836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 37044488 37044488 + Missense_Mutation SNP A A T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 NIPBL_ENST00000448238,neck,malignant_melanoma,-2,2 NIPBL_ENST00000448238 NM_015384 exon35 c.A6148T p.I2050F GCAAAAATCCTAG 133 54 0.41 159 0 0 -2 2 115 58 0.50 EGFLAM 133584 mdanderson.org 37 5 38427181 38427181 + Missense_Mutation SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001205301 exon14 c.G1881T p.E627D ACTGGAGCCCCAG 33 3 0.09 74 0 0 10 0 0.00 SEMA6A 57556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 115837930 115837930 + Missense_Mutation SNP T T A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_020796 exon3 c.A194T p.N65I GTTCCGTTCATGA 147 22 0.15 186 0 0 246 79 0.32 AFF4 27125 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 132232477 132232479 + In_Frame_Del DEL CTT CTT - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 CTT CTT Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014423 exon11 c.1844_1846del p.615_616del AGACTCCTTCTTT 105 38 0.36 136 0 0 64 0 0.00 KDM3B 51780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 137762705 137762705 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_016604 exon18 c.C4453T p.L1485F CTCAAACTCAAGG 61 17 0.28 77 0 0 245 108 0.44 TNIP1 10318 mdanderson.org 37 5 150444639 150444639 + Silent SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001252385 exon2 c.G18A p.P6P CCGGTACGGTCCT 39 3 0.08 60 0 0 48 0 0.00 DOK3 79930 hgsc.bcm.edu;bcgsc.ca 37 5 176936846 176936848 + In_Frame_Del DEL CGA CGA - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 CGA CGA Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_024872 exon1 c.7_9del p.3_3del GCTCCCCGAGTCA 42 14 0.33 66 0 0 0 0 WRNIP1 56897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 2770515 2770515 + Silent SNP G G A rs148604433 TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_020135 exon3 c.G1176A p.A392A GCGAGCGATCAAC 100 6 0.06 89 0 0 0 214 14 0.07 HIST1H2AD 3013 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 26199104 26199105 + Frame_Shift_Del DEL CT CT - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 CT CT Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_021065 exon1 c.368_369del p.123_123del TGGTGACTCTCAG 260 73 0.28 249 0 0 1 0 0.00 BTN2A3P 0 broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 90 5 0.06 66 2 0.0303030303 9 4 0 0.00 HIST1H3H 8357 broad.mit.edu 37 6 27777859 27777859 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . HIST1H3H NM_003536 exon1 c.G8A p.R3H TGGCGCGTACGAA 93 4 0.04 78 1 0.0128205128 25 2 0 0.00 HIST1H1B 3009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27834706 27834706 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_005322 exon1 c.C602T p.A201V GGCTTTGCCGCCT 148 31 0.21 113 0 0 1 0 0.00 PPP1R18 170954 broad.mit.edu 37 6 30652190 30652190 + Nonsense_Mutation SNP T T A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001134870 exon2 c.A1606T p.K536X CCTGTTTGTGGTG 130 26 0.20 101 1 0.0099009901 89 4 0.04 TJAP1 93643 mdanderson.org 37 6 43473096 43473096 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001146017 exon10 c.G1177A p.A393T AGCCCAGCACCCC 19 2 0.11 16 0 0 121 0 0.00 VEGFA 7422 mdanderson.org 37 6 43738965 43738965 + Silent SNP C C T rs370465512 alternate_allele TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001204385 exon1 c.C522T p.P174P CGGCCCCGGTCGG 27 3 0.11 15 0 0 39 0 0.00 KIAA1009 22832 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 84862439 84862439 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_014895 exon23 c.G3454A p.G1152R GGGTTCCAGGGAA 141 8 0.06 149 0 0 11 0 0.00 ABCB5 340273 broad.mit.edu 37 7 20687234 20687234 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . ABCB5 NM_001163941 exon10 c.G1058A p.R353Q TAGCCCGAGGAGC 155 4 0.03 87 0 0 357 0 0 SP4 6671 broad.mit.edu 37 7 21468306 21468306 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 SP4,colon,carcinoma,0,1 SP4 NM_003112 exon2 c.G19A p.E7K AAGAAGGAGGAGG 63 4 0.06 39 1 0.0256410256 91 1 8 0 0.00 STK31 56164 bcgsc.ca;mdanderson.org 37 7 23776556 23776556 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . STK31 NM_031414 exon8 c.G876T p.G292G TTTAGGGTCTAAC 87 5 0.06 60 0 0 175 2 0 0.00 FAM188B 84182 mdanderson.org 37 7 30868345 30868345 + Missense_Mutation SNP T T C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_032222 exon6 c.T1124C p.L375P GTGCCCTGCGGCT 47 3 0.06 23 0 0 11 0 0.00 CCT6P1 0 broad.mit.edu 37 7 65222986 65222986 + RNA SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . TCTGGCGTTTTTT 40 3 0.08 13 0 0 48 0 0.00 OR2AE1 81392 mdanderson.org 37 7 99474221 99474221 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001005276 exon1 c.G436A p.V146I ACATGACAGCCAT 48 3 0.06 36 0 0 1 0 0.00 ZC3HC1 51530 broad.mit.edu 37 7 129664141 129664141 + Silent SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . ZC3HC1 NM_016478 exon7 c.C982A p.R328R GGCTCCGGGTCAT 67 3 0.04 49 0 0 45 182 0 0.00 ZNF862 643641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149545019 149545019 + Missense_Mutation SNP A A C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_001099220 exon4 c.A437C p.Q146P TTGTGCAGTTTCC 109 14 0.13 72 0 0 5 0 0.00 ABCF2 10061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150912779 150912779 + Missense_Mutation SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_005692 exon13 c.G1441C p.E481Q TGTACTCCAAAGG 187 24 0.13 115 0 0 266 50 0.19 CHPF2 54480 broad.mit.edu 37 7 150931207 150931207 + Missense_Mutation SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 CHPF2,bladder,carcinoma,0,1 CHPF2 NM_019015 exon1 c.A110G p.E37G AGGGGGAGGGAGA 139 5 0.04 99 1 0.0101010101 52 1 84 0 0.00 CDCA2 157313 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 25344851 25344851 + Splice_Site SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_152562 exon12 c.1533+1G>A . AGAAATGTAAGTG 70 9 0.13 78 0 0 0 0 VPS13B 157680 broad.mit.edu;mdanderson.org 37 8 100523425 100523425 + Missense_Mutation SNP T T G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . VPS13B NM_017890 exon29 c.T4393G p.L1465V CACAAGTTAACAT 72 4 0.06 106 0 0 811 4 0 0.00 COL14A1 7373 broad.mit.edu 37 8 121322273 121322273 + Missense_Mutation SNP A A G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . COL14A1 NM_021110 exon37 c.A4427G p.K1476R GACCAAAGGGCCA 104 3 0.03 97 0 0 292 105 0 0.00 DENND4C 55667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 19346326 19346326 + Missense_Mutation SNP C C T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_017925 exon22 c.C3412T p.L1138F CAAGAACTCCTTG 90 28 0.31 65 0 0 45 13 0.29 MELK 9833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 36657333 36657333 + Silent SNP A A C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 MELK,right_lower_lobe,carcinoma,+2,1 MELK NM_014791 exon13 c.A1149C p.T383T ATCAACAGGTGCT 106 32 0.30 71 0 0 2 1 110 43 0.39 LOC642236 0 bcgsc.ca 37 9 68427863 68427863 + RNA SNP T T C rs144877320 bycluster TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . AGTCATTTGCAGT 267 16 0.06 214 4 0.0186915888 38 12 0.32 TRAF2 7186 mdanderson.org 37 9 139811054 139811054 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_021138 exon7 c.G665A p.G222D CCATCGGCTGCCT 31 3 0.10 35 0 0 66 0 0.00 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 31950249 31950249 + Missense_Mutation SNP G G C novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_004006 exon46 c.C6710G p.P2237R TCAAGTGGGATAC 76 14 0.18 68 0 0 0 0 ZXDA 7789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 57936054 57936054 + Silent SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_007156 exon1 c.C801T p.Y267Y GCACAGGTACAGC 68 24 0.35 68 0 0 2 2 1.00 BCYRN1 618 hgsc.bcm.edu 37 X 70890401 70890401 + RNA SNP G G T novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . . . . . GAGAACGGGGAGA 55 24 0.44 35 0 0 0 0 SASH3 54440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128925040 128925040 + Missense_Mutation SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_018990 exon4 c.G425A p.S142N TGCTCAGCCGCCA 233 100 0.43 189 0 0 18 0 0.00 GPC3 2719 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 133119396 133119396 + Silent SNP C C G novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . GPC3 NM_001164617 exon1 c.G81C p.P27P CGGCGGCGGGGGC 151 7 0.05 110 2 0.0181818182 88 32 0 0.00 MAGEC1 9947 broad.mit.edu 37 X 140994639 140994641 + In_Frame_Del DEL CTC CTC - novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 CTC CTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . MAGEC1 NM_005462 exon4 c.1449_1451del p.483_484del TGTGAGCTCCTCC 197 8 0.04 158 0 0 317 0 0 HMGB3 3149 mdanderson.org 37 X 150156360 150156360 + Silent SNP G G A novel TCGA-XY-A8S2-01A-11D-A435-10 TCGA-XY-A8S2-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 63bb0810-bd3e-4f54-bd20-4b016522d054 a7a967d7-1710-4c00-93cf-9d80cebc0e56 . . NM_005342 exon5 c.G576A p.E192E AGAAGAGGAGGAG 24 2 0.08 11 0 0 196 2 0.01