Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV RNF207 388591 mdanderson.org 37 1 6266729 6266729 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_207396 exon2 c.G134T p.C45F ACTTCTGTGCCGG 33 3 0.09 29 0 0 3 0 0.00 MIR3675 0 broad.mit.edu 37 1 17185383 17185384 + RNA INS - - C rs112074527 bycluster;by1000genomes TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . AATTTTTAGTGCA 7 3 0.43 7 0 0 0 0 ATP13A2 23400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17318882 17318882 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_022089 exon18 c.C1861T p.P621S TGACTGGCACCGG 80 8 0.10 78 0 0 183 42 0.23 EIF4G3 8672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 21299496 21299496 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001198803 exon11 c.C455T p.T152I CTTACAGTTTTTT 69 13 0.19 64 0 0 61 18 0.30 EPHB2 2048 mdanderson.org 37 1 23111394 23111394 + Silent SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 EPHB2,NS,NS,0,1 EPHB2 NM_004442 exon3 c.G636T p.S212S CCTGTCGGGGGCT 55 3 0.05 73 0 0 0 1 13 0 0.00 RAB42 115273 hgsc.bcm.edu;bcgsc.ca 37 1 28920547 28920547 + Frame_Shift_Del DEL G G - novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 .,1 . NM_001193532 exon2 c.574delT p.W192fs AGGGCTGGGGGGG 69 13 0.19 76 0 0 10 1 44 0 0.00 GUCA2B 2981 mdanderson.org 37 1 42619175 42619175 + Silent SNP G G C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_007102 exon1 c.G54C p.L18L CCTCCTGCTGCTG 37 3 0.08 29 0 0 0 0 USP1 7398 broad.mit.edu;mdanderson.org 37 1 62916589 62916589 + Missense_Mutation SNP T T G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . USP1 NM_001017415 exon9 c.T2295G p.N765K TCTGAATTCTCTT 53 6 0.11 43 0 0 51 186 60 0.32 NRAS 4893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 115256529 115256529 + Missense_Mutation SNP T T C rs11554290 bycluster;byfrequency;byhapmap TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 NRAS,NS,haematopoietic_neoplasm,-1,2068 NRAS NM_002524 exon3 c.A182G p.Q61R TCTTCTTGTCCAG 101 18 0.18 97 0 0 -1 2068 156 50 0.32 . 149013 broad.mit.edu 37 1 146397444 146397444 + Silent SNP A A G rs7364675 bycluster TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . GCTGAAACAAGCT 8 2 0.25 9 0 0 20 0 0.00 IVL 3713 broad.mit.edu 37 1 152883337 152883337 + Missense_Mutation SNP A A G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . IVL NM_005547 exon2 c.A1064G p.H355R TGGAGCACCTGGA 79 4 0.05 97 1 0.0103092784 100 0 0 FMN2 56776 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 240371435 240371435 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 FMN2,NS,carcinoma,-1,2 FMN2 NM_020066 exon5 c.C3323T p.P1108L GCATACCTCCTCC 71 18 0.25 77 0 0 -1 2 8 5 0.63 WAC 51322 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 28822948 28822948 + Missense_Mutation SNP C C G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . WAC NM_100486 exon2 c.C63G p.D21E GGGGGACTCGCAG 134 26 0.19 152 2 0.0131578947 77 224 54 0.24 FZD8 8325 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 35930262 35930262 + Missense_Mutation SNP C C G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_031866 exon1 c.G96C p.E32D TGCCAGCTCCTTG 41 11 0.27 51 0 0 42 27 0.64 HSD17B7P2 0 broad.mit.edu 37 10 38652034 38652035 + RNA INS - - TT novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . TTAACTCTTTTTT 5 2 0.40 4 0 0 0 0 FAM149B1 317662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 74994957 74994957 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_173348 exon12 c.C1483T p.H495Y AAACCCCATGGCG 74 11 0.15 80 0 0 67 18 0.27 DGKZ 8525 mdanderson.org 37 11 46387955 46387955 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001105540 exon2 c.G149T p.R50L AGCGGCGCCGCTC 22 2 0.09 22 0 0 14 0 0.00 AMBRA1 55626 mdanderson.org 37 11 46419165 46419165 + Silent SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001267782 exon20 c.C3741A p.T1247T TGGCTGGGTTGGC 42 3 0.07 45 0 0 93 0 0.00 . 219537 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57309031 57309031 + Splice_Site SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . GGGAGAGTACGGC 73 12 0.16 99 0 0 0 0 VWCE 220001 mdanderson.org 37 11 61048319 61048319 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_152718 exon8 c.G1176A p.M392I TTCATGCATGGCT 33 3 0.09 46 0 0 13 0 0.00 RBM4 5936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66411186 66411186 + Silent SNP T T A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_002896 exon3 c.T678A p.R226R CTGCCGTGCTGCC 51 11 0.22 51 0 0 261 93 0.36 KDM2A 22992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 67022423 67022423 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_012308 exon21 c.G3386A p.C1129Y GAGGATGCAAGCA 64 9 0.14 99 0 0 253 65 0.26 APLP2 334 mdanderson.org 37 11 130013286 130013286 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001642 exon18 c.G2235T p.M745I CAAGATGCAGAAC 36 3 0.08 54 0 0 940 0 0.00 PRB3 5544 broad.mit.edu 37 12 11420721 11420721 + RNA SNP A A G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . PRB3 NM_006249 exon3 c.T462C p.G154G CGGGGGACCTTGG 199 24 0.12 136 14 0.1029411765 84 0 0 ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 26636703 26636703 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 ITPR2,NS,carcinoma,-1,1 ITPR2 NM_002223 exon42 c.G5940A p.K1980K TACATTCTTCTCA 253 27 0.11 185 1 0.0054054054 -1 1 38 0 0.00 PLEKHA8P1 51054 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 45567287 45567287 + RNA SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 PLEKHA8P1,NS,carcinoma,+2,1 PLEKHA8P1 . . . . AGAGGGCTTCAGT 117 9 0.08 105 0 0 2 1 46 6 0.13 HOXC13 3229 mdanderson.org 37 12 54333053 54333053 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_017410 exon1 c.C363T p.Y121Y GGGCTACGGCTAC 42 4 0.10 34 0 0 0 0 POLE 5426 mdanderson.org 37 12 133209345 133209345 + Missense_Mutation SNP C C A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 POLE_ENST00000320574,right_lower_lobe,carcinoma,+1,2 POLE_ENST00000320574 NM_006231 exon44 c.G6041T p.G2014V CTCAGCCCGTCCT 23 4 0.17 25 0 0 1 2 177 0 0.00 TPTE2P1 0 broad.mit.edu 37 13 25525327 25525328 + RNA INS - - A rs139677331 by1000genomes TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . AAAAAAGAAAAAA 8 3 0.38 7 0 0 0 0 FAM155A 728215 mdanderson.org 37 13 108518661 108518661 + Missense_Mutation SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 FAM155A,NS,carcinoma,0,2 FAM155A NM_001080396 exon1 c.A284G p.Q95R CGCCGCTGCTGCT 20 2 0.10 37 0 0 0 2 1 0 0.00 CMTM5 116173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23847656 23847656 + Silent SNP C C T rs371218018 TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_138460 exon2 c.C225T p.F75F CCTCTTCCTCTAT 144 26 0.18 135 0 0 0 0 PSMA6 5687 broad.mit.edu 37 14 35782215 35782216 + Frame_Shift_Ins INS - - A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . PSMA6 NM_002791 exon5 c.538_539insA p.E180fs TTCCTTGAAAAAA 100 8 0.08 115 0 0 18 850 0 0.00 SYNE3 161176 mdanderson.org 37 14 95918708 95918708 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_152592 exon6 c.G1150A p.A384T CCAGCGCCGCCCG 18 2 0.11 20 0 0 1 0 0.00 CHRM5 0 broad.mit.edu 37 15 34355354 34355354 + Missense_Mutation SNP A A G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . CHRM5 NM_012125 exon3 c.A436G p.R146G CCGAAAAGGGCTG 111 3 0.03 95 0 0 59 0 0 RORA 6095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 60849111 60849111 + Missense_Mutation SNP T T A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_134260 exon3 c.A236T p.N79I TTGCCATTCTGCC 176 17 0.10 150 0 0 0 0 RORA 6095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 60849113 60849113 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_134260 exon3 c.G234A p.Q78Q GCCATTCTGCCTC 178 18 0.10 151 0 0 0 0 PRKXP1 441733 hgsc.bcm.edu 37 15 101094337 101094337 + RNA SNP G G A rs191146252 by1000genomes TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . GTCCCTGTAGATG 122 15 0.12 102 0 0 0 11 2 0.18 FAM86A 196483 ucsc.edu 37 16 5140488 5140488 + Missense_Mutation SNP C C T rs200021489 byfrequency TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . FAM86A NM_201400 exon5 c.G421A p.A141T GGGCGGCGTCCCA 144 4 0.03 169 1 0.0059171598 32 50 12 0.24 rescued with RNA-seq IL27 246778 broad.mit.edu 37 16 28511197 28511197 + Silent SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . IL27 NM_145659 exon5 c.A507G p.E169E CTCCTCTTCCTCC 35 3 0.09 42 1 0.0238095238 27 4 0 0.00 SETD6 79918 mdanderson.org 37 16 58549762 58549762 + Missense_Mutation SNP T T G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_024860 exon2 c.T95G p.V32G GGCGGGTGGGGCT 13 4 0.31 10 1 0.1 22 1 0.05 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7574027 7574027 + Missense_Mutation SNP C C A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 TP53_ENST00000269305,NS,carcinoma,0,16 TP53_ENST00000269305 NM_000546 exon10 c.G1000T p.G334W CACGCCCACGGAT 76 10 0.13 106 0 0 0 16 124 35 0.28 EFNB3 1949 mdanderson.org 37 17 7612495 7612495 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001406 exon5 c.C624T p.T208T CCCCACCAGCAAT 16 2 0.13 18 0 0 19 8 0.42 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 188 12 0.06 193 8 0.0414507772 37 26 0.70 PSMD11 5717 broad.mit.edu 37 17 30771555 30771555 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . PSMD11 NM_002815 exon1 c.C14T p.A5V CGGCGGCGGTGGT 160 5 0.03 133 0 0 41 116 0 0.00 ERBB2 2064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37879626 37879626 + Missense_Mutation SNP G G C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_004448 exon17 c.G2001C p.L667F GGTCTTGGGGGTG 84 17 0.20 109 0 0 49 18 0.37 KRT9 3857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39727976 39727976 + Missense_Mutation SNP A A G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_000226 exon1 c.T269C p.F90S CCCCCAAAGCCAC 136 21 0.15 145 0 0 0 0 CDC27 996 mdanderson.org 37 17 45234397 45234397 + Missense_Mutation SNP G G A rs7350908 bycluster;byhapmap TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001114091 exon7 c.C724T p.P242S TATCAGGTGAAAT 76 7 0.09 68 2 0.0294117647 131 0 0.00 OXLD1 339229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79632527 79632527 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001039842 exon2 c.G148A p.A50T CAGGGGCTTGCGC 60 9 0.15 59 0 0 86 9 0.10 BSG 682 mdanderson.org 37 19 577976 577976 + Silent SNP C C A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001728 exon2 c.C270A p.A90A CGCGGCCAGCACC 41 3 0.07 62 0 0 8 0 0.00 EMR1 2015 mdanderson.org 37 19 6937381 6937381 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001974 exon19 c.G2509T p.G837W CTGCAGGGGGCCT 55 3 0.05 70 0 0 19 0 0.00 PEX11G 92960 mdanderson.org 37 19 7542209 7542209 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_080662 exon5 c.G605A p.G202D AGCACGCCCCGGG 28 3 0.11 23 0 0 6 0 0.00 CAMSAP3 57662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7675802 7675802 + Missense_Mutation SNP A A T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001080429 exon10 c.A1115T p.N372I CTCAGAACAACAG 57 12 0.21 85 0 0 23 15 0.65 FBN3 84467 mdanderson.org 37 19 8145898 8145898 + Missense_Mutation SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_032447 exon58 c.A7442G p.Q2481R CAGGCCTGGTGGT 17 2 0.12 25 0 0 35 0 0.00 PRKCSH 5589 hgsc.bcm.edu 37 19 11558370 11558370 + Silent SNP G G A rs77563879 bycluster TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 PRKCSH,caecum,carcinoma,0,1 PRKCSH NM_001001329 exon11 c.G966A p.E322E GGAGGAGGAAGAA 55 3 0.05 77 1 0.012987013 0 1 127 0 0.00 MRI1 84245 broad.mit.edu;mdanderson.org 37 19 13879552 13879552 + Splice_Site SNP G G A rs147924371 TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . MRI1 NM_001031727 exon4 c.724+1G>A . TGTCAGGTAAGCA 38 5 0.13 42 0 0 35 14 14 1.00 SLC25A42 284439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19218819 19218819 + Missense_Mutation SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_178526 exon7 c.T614C p.F205S TGAGCTTCTTCAC 71 13 0.18 76 0 0 27 6 0.22 ZNF850 342892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 37239994 37239994 + Missense_Mutation SNP A A G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001193552 exon5 c.T1948C p.C650R TCCCACATTCCTG 20 6 0.30 20 0 0 8 2 0.25 MEGF8 1954 mdanderson.org 37 19 42880076 42880076 + Nonsense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001271938 exon42 c.G7687T p.E2563X CCAGCAGAGCCAC 39 3 0.08 44 0 0 11 0 0.00 ZC3H4 23211 mdanderson.org 37 19 47575844 47575844 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_015168 exon12 c.C1567A p.P523T CAGGGGGCCGAGG 35 3 0.09 31 0 0 18 0 0.00 ZNF808 388558 mdanderson.org 37 19 53050833 53050833 + Silent SNP A A G rs377723416 TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001039886 exon4 c.A132G p.A44A CCCTGCACAGAGG 65 7 0.11 97 1 0.0103092784 22 0 0.00 CNOT3 4849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54646888 54646888 + Missense_Mutation SNP A A C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 CNOT3,NS,carcinoma,+1,6 CNOT3 NM_014516 exon3 c.A59C p.E20A TGTCCGAGGGCGT 71 10 0.14 75 0 0 1 6 171 54 0.32 LOC401010 0 bcgsc.ca 37 2 132200890 132200890 + RNA SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . TACAGCTGCTCCA 111 17 0.15 119 0 0 53 5 0.09 MIR548N 100302152 hgsc.bcm.edu 37 2 179500487 179500487 + RNA SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . GAACAAGTAATAT 103 13 0.13 96 0 0 0 0 ITGA4 3676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 182400167 182400167 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 ITGA4,NS,carcinoma,0,1 ITGA4 NM_000885 exon28 c.C3012T p.F1004F TGGCTTCTTTAAA 269 34 0.13 237 0 0 0 1 75 0 0.00 KLHL30 377007 mdanderson.org 37 2 239050003 239050003 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_198582 exon2 c.G608T p.W203L TGCGCTGGGTGCG 18 3 0.17 22 0 0 0 0 CSRP2BP 57325 broad.mit.edu 37 20 18142572 18142572 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 CSRP2BP,NS,carcinoma,0,3 CSRP2BP NM_020536 exon5 c.G791T p.R264L GGTCTCGAACTCA 94 4 0.04 88 0 0 80 3 110 0 0.00 AIRE 326 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 45716314 45716316 + Missense_Mutation TNP TCC TCC GTT novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 TCC TCC Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_000383 exon13 c.C1554T p.S518V CTGGAGTCCCTTC 65 8 0.12 104 0 0 0 0 LSS 4047 mdanderson.org 37 21 47642587 47642587 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 LSS,colon,carcinoma,+1,1 LSS NM_001145436 exon4 c.C385T p.R129W GGTACCGCACAAT 49 3 0.06 28 0 0 1 1 97 0 0.00 THOC5 8563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29916094 29916094 + Splice_Site SNP C C G novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001002877 exon16 c.1278-1G>C . AGGATGCTGCAGA 52 10 0.19 57 0 0 7 7 1.00 APOBEC3B 9582 hgsc.bcm.edu 37 22 39382074 39382074 + Silent SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 APOBEC3B,NS,carcinoma,+1,1 APOBEC3B NM_004900 exon3 c.C432T p.R144R AGCCCGCGTGACG 37 3 0.08 43 0 0 1 1 12 0 0.00 P4HTM 54681 broad.mit.edu 37 3 49042374 49042374 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . P4HTM NM_177938 exon6 c.G968T p.G323V AGGGGGGCCACTA 47 3 0.06 54 0 0 71 23 0 0.00 RBM15B 29890 mdanderson.org 37 3 51429280 51429280 + Silent SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_013286 exon1 c.G450T p.L150L CGCGCTGCCCGCC 16 3 0.19 19 0 0 36 0 0.00 COPG1 22820 mdanderson.org 37 3 128979230 128979230 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_016128 exon11 c.G926A p.R309H CTGTTCGTACCCT 39 3 0.08 44 0 0 213 0 0.00 TBCCD1 55171 mdanderson.org 37 3 186272317 186272317 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001134415 exon6 c.C1270A p.P424T GCATTGGGTAATG 56 3 0.05 78 0 0 78 0 0.00 MFSD10 10227 mdanderson.org 37 4 2932979 2932979 + Nonsense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001146069 exon11 c.C1137A p.C379X GGACAGGCAGGGC 40 3 0.08 53 0 0 109 0 0.00 BTC 685 mdanderson.org 37 4 75719476 75719476 + Silent SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001729 exon1 c.C60A p.A20A ACCCAGGGCAAGG 31 3 0.10 42 0 0 0 0 FAM198B 51313 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 159092431 159092431 + Missense_Mutation SNP T T A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_016613 exon2 c.A97T p.R33W GGGTCCTTGGACG 83 7 0.08 109 0 0 21 0 0.00 ADCY2 108 broad.mit.edu;mdanderson.org 37 5 7396571 7396571 + Silent SNP C C A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . ADCY2 NM_020546 exon1 c.C162A p.V54V CATCGTCATGGGC 59 11 0.19 75 2 0.0266666667 337 0 0 DMXL1 1657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 118469192 118469192 + Missense_Mutation SNP T T A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_005509 exon12 c.T1573A p.S525T TAGGTGTCCTTTG 81 15 0.19 85 0 0 22 7 0.32 SYCP2L 221711 mdanderson.org 37 6 10928665 10928665 + Silent SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001040274 exon18 c.T1470C p.P490P GGTCCCTGACTTC 48 3 0.06 25 0 0 23 0 0.00 NFKBIL1 4795 mdanderson.org 37 6 31525456 31525456 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001144961 exon3 c.G386T p.G129V CCATGGGAATAAA 70 4 0.06 72 0 0 79 0 0.00 GRM4 2914 broad.mit.edu 37 6 34101114 34101114 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . GRM4 NM_001256811 exon2 c.C160A p.L54M GGAACAGGCCTCC 64 3 0.05 72 0 0 317 0 0 PHKG1 5260 mdanderson.org 37 7 56148891 56148891 + Silent SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001258459 exon11 c.C1116A p.L372L AGGCCGGAGGGCA 44 3 0.07 46 0 0 1 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . CCGGGGTCCTTGA 100 3 0.03 112 1 0.0089285714 0 0 HIP1 3092 mdanderson.org 37 7 75368221 75368221 + Missense_Mutation SNP G G T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001243198 exon1 c.C18A p.S6R CATGGAGCTGGCC 45 4 0.09 30 0 0 2 0 0.00 . 0 bcgsc.ca 37 7 82219828 82219828 + RNA SNP T T C novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . AGCTGGTTTCATA 59 6 0.10 56 0 0 0 0 ZAN 7455 broad.mit.edu 37 7 100336500 100336502 + RNA DEL CCC CCC - novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 CCC CCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . ZAN . . . . TCTTCTCCCTCTC 8 5 0.63 4 0 0 658 0 0 AP1S1 1174 bcgsc.ca;mdanderson.org 37 7 100799986 100799986 + Missense_Mutation SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . AP1S1 NM_001283 exon2 c.G115A p.V39I CAGGTTGTCCTGG 64 12 0.19 70 0 0 22 124 18 0.15 ARFGEF1 10565 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 68128855 68128855 + Silent SNP T T A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . ARFGEF1 NM_006421 exon33 c.A4656T p.P1552P TGGAGGTGGGGGG 243 28 0.12 211 3 0.0142180095 196 333 76 0.23 KIAA0368 23392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 114132781 114132781 + Silent SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_001080398 exon46 c.C5442T p.I1814I CTTCAAGATATCA 112 12 0.11 88 0 0 688 181 0.26 ENG 2022 mdanderson.org 37 9 130588924 130588924 + Missense_Mutation SNP G G A rs199840979 bycluster;byfrequency TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_000118 exon4 c.C388T p.P130S CCGGGGGCTCTTG 39 4 0.10 49 0 0 0.002 167 0 0.00 RNR1 6052 hgsc.bcm.edu 37 MT 1282 1282 + RNA SNP G G A novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . . . . . AACCCTGATGAAG 20 13 0.65 14 0 0 0 0 CYBB 1536 mdanderson.org 37 X 37665737 37665737 + Missense_Mutation SNP C C T novel TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . . NM_000397 exon11 c.C1412T p.A471V ACAATGCCGGCTT 48 3 0.06 53 0 0 690 0 0.00 PORCN 64840 broad.mit.edu 37 X 48370301 48370301 + Silent SNP C C T rs142038251 TCGA-XY-A89B-01A-11D-A435-10 TCGA-XY-A89B-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 33cb241d-2efe-4922-af5a-389ea190a083 f478c02b-426c-4d7c-824f-ef1b8d222670 . PORCN NM_203475 exon3 c.C351T p.T117T AGACACCGTGACA 295 5 0.02 301 0 0 61 30 0 0.00