Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CSMD2 114784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34209037 34209037 + Missense_Mutation SNP C C A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_052896 exon14 c.G1897T p.V633F TGATGACCAGGAA 55 12 0.22 57 0 0 0 0 DMAP1 55929 mdanderson.org 37 1 44685093 44685093 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001034024 exon8 c.G922T p.A308S GAGACTGCAGGCA 41 3 0.07 48 0 0 32 0 0.00 TCTEX1D4 343521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 45271711 45271711 + Silent SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001013632 exon2 c.C630T p.F210F CACCGCGAAGAGC 67 19 0.28 66 0 0 1 1 1.00 TMEM48 55706 mdanderson.org 37 1 54291599 54291599 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_018087 exon5 c.C466A p.P156T CAGCAGGGCTACC 31 3 0.10 44 0 0 1 0 0.00 MAGI3 260425 broad.mit.edu 37 1 114215976 114215976 + Silent SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . MAGI3 NM_152900 exon19 c.A3078G p.R1026R GGAGAGAGGCCCC 129 3 0.02 133 0 0 181 0 0 TRIM45 80263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 117663450 117663450 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001145635 exon1 c.G374A p.S125N CGTAGGCTCTCCA 103 26 0.25 120 0 0 1 1 1.00 NBPF10 100132406 hgsc.bcm.edu 37 1 145293535 145293535 + Missense_Mutation SNP C C G rs55936365 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 NBPF10,NS,carcinoma,0,2 NBPF10 NM_001039703 exon1 c.C130G p.L44V TGTTTTCTAACTC 48 3 0.06 51 2 0.0392156863 0 2 1 0 0.00 NBPF10 100132406 broad.mit.edu 37 1 145311916 145311916 + Missense_Mutation SNP A A G rs76836566 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 NBPF10_ENST00000369338,NS,carcinoma,0,3 NBPF10 . . . . TTTTACATATTGG 51 4 0.08 39 1 0.0256410256 221 3 1 0 0.00 RUSC1 23623 broad.mit.edu 37 1 155292770 155292770 + Silent SNP A A C novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . RUSC1 NM_001105204 exon2 c.A1206C p.P402P GCCCCCACCCCCG 39 21 0.54 39 14 0.358974359 85 0 0 ASH1L 55870 broad.mit.edu 37 1 155340657 155340657 + Frame_Shift_Del DEL T T - novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . ASH1L NM_018489 exon11 c.6450delA p.K2150fs CCAACCTTTTTCC 183 7 0.04 142 0 0 279 1 0 0.00 SH2D2A 9047 mdanderson.org 37 1 156783685 156783685 + Silent SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001161441 exon5 c.G552A p.P184P GCTGAGCGGGTGC 16 2 0.13 8 0 0 1 0 0.00 GUK1 2987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 228335314 228335314 + Splice_Site SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001242839 exon6 c.391-2A>G . CTTTTTAGGAGCA 96 35 0.36 57 0 0 2 1 0.50 STAM 8027 mdanderson.org 37 10 17747006 17747006 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_003473 exon11 c.G1038T p.K346N TGAAAAGCTGGAA 70 4 0.06 48 0 0 1 0 0.00 KIAA1217 56243 broad.mit.edu 37 10 24669920 24669920 + Silent SNP T T C novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 KIAA1217,NS,carcinoma,+1,1 KIAA1217 NM_019590 exon3 c.T477C p.P159P AACCCCTTTTTCC 108 4 0.04 70 1 0.0142857143 235 1 0 0 FZD8 8325 mdanderson.org 37 10 35930317 35930317 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_031866 exon1 c.C41A p.A14D AAGGCGGCCAGCA 34 3 0.09 25 0 0 0 0 TUB 7275 mdanderson.org 37 11 8122144 8122144 + Missense_Mutation SNP G G T rs144050808 bycluster;alternate_allele TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 TUB,NS,carcinoma,0,1 TUB NM_003320 exon11 c.G1376T p.R459L GCCCCCGCAACGT 38 3 0.08 63 0 0 0 1 0 0 NAALADL1 10004 mdanderson.org 37 11 64820723 64820723 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_005468 exon8 c.C1165A p.L389I GGGAGAGCTCCAG 33 3 0.09 88 0 0 0 0 SIPA1 6494 mdanderson.org 37 11 65413325 65413325 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_006747 exon6 c.C1160T p.T387M CCACAGCGGATTC 41 3 0.07 78 0 0 0 0 CTSW 1521 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65648922 65648922 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . CTSW NM_001335 exon3 c.G217T p.A73S GCCCAGGCTCAGA 54 5 0.09 113 0 0 18 1 0 0.00 NAALAD2 10003 mdanderson.org 37 11 89924798 89924798 + Silent SNP C C A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_005467 exon19 c.C2106A p.I702I TGCTATCTTTGAT 22 2 0.09 40 0 0 3 0 0.00 CHD4 1108 hgsc.bcm.edu 37 12 6711150 6711150 + Missense_Mutation SNP C C A rs150832622 bycluster;by1000genomes TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001273 exon4 c.G414T p.E138D ATCCTCCTCCTCC 94 4 0.04 30 0 0 0.002 4 0 0.00 FAM186A 121006 hgsc.bcm.edu 37 12 50747102 50747102 + Silent SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 FAM186A_ENST00000327337,NS,carcinoma,0,3 FAM186A_ENST00000327337 NM_001145475 exon4 c.T3513C p.L1171L AGGGGTAAGAGGG 193 9 0.05 99 2 0.0202020202 0 3 0 0 KRT6B 3854 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52841624 52841624 + Silent SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . KRT6B NM_005555 exon7 c.C1362T p.V454V CAGCTTGACGTTC 217 27 0.12 112 1 0.0089285714 90 0 0 SFSWAP 6433 mdanderson.org 37 12 132195838 132195838 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001261411 exon1 c.G64T p.G22W GAGGCCGGGCCAG 33 3 0.09 31 0 0 3 0 0.00 ZNF268 10795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 133779315 133779315 + Missense_Mutation SNP T T C novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001165881 exon6 c.T1043C p.V348A AGCTTGTTATACA 62 6 0.10 33 0 0 2 2 1.00 CLN5 1203 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 77574850 77574851 + Frame_Shift_Ins INS - - T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . CLN5 NM_006493 exon4 c.970_971insT p.V324fs ACATCTGTTTTTG 84 23 0.27 119 0 0 32 6 0 0.00 CTSG 1511 mdanderson.org 37 14 25045411 25045411 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001911 exon1 c.C19A p.L7M CCAGCAGAAGCAG 43 3 0.07 46 0 0 0 0 . 0 broad.mit.edu 37 14 106539367 106539367 + RNA SNP C C G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . CAGCTGCACCTGG 245 6 0.02 177 1 0.0056497175 12 1 0.08 rescued with RNA-seq RYR3 6263 mdanderson.org 37 15 33926901 33926901 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 RYR3,extremity,malignant_melanoma,-1,1 RYR3 NM_001243996 exon25 c.G3142T p.G1048W GGTTACGGGTATA 49 3 0.06 65 0 0 -1 1 0 0 . 0 broad.mit.edu 37 15 76075457 76075457 + RNA SNP C C T rs200753178 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . AGGCTGCGAAAGC 177 6 0.03 174 0 0 0 0 FES 2242 ucsc.edu 37 15 91435302 91435302 + Silent SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . FES NM_002005 exon13 c.G1668T p.L556L GGTGCTGAACCAT 35 4 0.11 36 0 0 102 1 0 0.00 WDR90 197335 mdanderson.org 37 16 705434 705434 + Silent SNP C C A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_145294 exon15 c.C1684A p.R562R CAGGCCCGGGACG 21 2 0.10 22 0 0 0 0 IFT140 9742 mdanderson.org 37 16 1574816 1574816 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 IFT140,NS,carcinoma,-1,1 IFT140 NM_014714 exon23 c.G2966A p.R989H TGGATGCGGACCA 47 3 0.06 44 0 0 -1 1 0 0 FLYWCH1 84256 ucsc.edu 37 16 2983280 2983280 + Missense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . FLYWCH1 NM_020912 exon5 c.G943A p.A315T AGCCGGGCCATCA 30 4 0.13 29 0 0 27 0 0 SULT1A1 6817 hgsc.bcm.edu 37 16 28619841 28619841 + Silent SNP G G T rs201320226 by1000genomes;alternate_allele TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 SULT1A1,colon,carcinoma,0,1 SULT1A1 NM_177534 exon2 c.C232A p.R78R GCACCCGCATGAA 67 3 0.04 60 0 0 0 1 2 0 0.00 ITGAX 3687 mdanderson.org 37 16 31367992 31367992 + Missense_Mutation SNP G G T rs369769040 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_000887 exon3 c.G190T p.G64C CAAACGGGTGGCC 44 3 0.07 34 0 0 2 0 0.00 PKD1L2 114780 broad.mit.edu 37 16 81155069 81155069 + RNA DEL A A - novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . PKD1L2 . . . . CATCTCAAAAAAA 6 2 0.33 4 0 0 361 0 0 ATP2C2 9914 mdanderson.org 37 16 84497330 84497330 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_014861 exon27 c.G2833T p.D945Y CCTGAAGATGTGT 73 4 0.05 75 0 0 0 0 OR1G1 8390 mdanderson.org 37 17 3030495 3030495 + Silent SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_003555 exon1 c.C351A p.V117V GGCCATGACCGCC 32 3 0.09 46 0 0 0 0 GP1BA 2811 mdanderson.org 37 17 4837656 4837656 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_000173 exon2 c.G1757T p.R586L GGGGACGGCAAGT 40 3 0.08 67 0 0 0 0 TNK1 8711 mdanderson.org 37 17 7292338 7292338 + Missense_Mutation SNP C C T rs375240414 alternate_allele TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001251902 exon13 c.C1936T p.R646C TGCTGGCGCATCC 44 3 0.07 68 0 0 2 0 0.00 TRAPPC1 58485 mdanderson.org 37 17 7834370 7834370 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 TRAPPC1,NS,carcinoma,+1,1 TRAPPC1 NM_021210 exon3 c.G268A p.V90M GTCCCACGCCCAA 37 3 0.08 61 0 0 1 1 177 0 0.00 MAPK7 5598 mdanderson.org 37 17 19283106 19283106 + Missense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_002749 exon3 c.G244A p.A82T CAGGTGGCCATCA 19 2 0.11 33 0 0 0 0 SLC47A2 146802 mdanderson.org 37 17 19584743 19584743 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_152908 exon15 c.C1437A p.F479L TGCCAGGAAGACA 49 3 0.06 85 0 0 0 0 RUNDC3A 10900 mdanderson.org 37 17 42393855 42393855 + Silent SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_006695 exon9 c.G1056T p.G352G TAATGGGGCCGAG 29 3 0.10 44 0 0 0 0 CDC27 996 hgsc.bcm.edu 37 17 45216113 45216113 + Missense_Mutation SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 CDC27_ENST00000531206,caecum,carcinoma,+1,6 CDC27_ENST00000531206 NM_001114091 exon13 c.T1714C p.S572P CTGGCGAATTTTT 30 2 0.07 30 1 0.0333333333 1 6 9 0 0.00 ANKRD30B 374860 mdanderson.org 37 18 14748616 14748616 + Silent SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001145029 exon1 c.G198T p.L66L CAACCTGAACAAA 49 3 0.06 62 0 0 0 0 PPAN-P2RY11 692312 mdanderson.org 37 19 10225090 10225090 + Missense_Mutation SNP G G T rs368370567 alternate_allele TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 PPAN-P2RY11,colon,carcinoma,+2,2 PPAN-P2RY11 NM_001040664 exon13 c.G2061T p.M687I CATCATGCGGGTG 40 3 0.08 22 0 0 2 2 15 0 0.00 OCEL1 79629 mdanderson.org 37 19 17337509 17337509 + Missense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_024578 exon2 c.G77A p.R26H CCGCCCGCAGACC 19 2 0.11 9 0 0 1 0 0.00 CAPNS1 826 broad.mit.edu 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . CAPNS1 NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 103 10 0.10 120 2 0.0166666667 19 1 1 1.00 CNOT3 4849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54651887 54651887 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_014516 exon11 c.C899T p.P300L AGTCTCCAGCCAA 158 30 0.19 115 0 0 7 2 0.29 ZNF814 730051 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 58384415 58384415 + Silent SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001144989 exon3 c.C2343T p.F781F TTCAGCGAAAGAT 87 5 0.06 97 0 0 6 0 0.00 IL1RL1 9173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102955396 102955396 + Missense_Mutation SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_016232 exon3 c.A161G p.N54S AAACAAACAAAAG 182 38 0.21 143 0 0 0 0 NSFL1C 55968 mdanderson.org 37 20 1424434 1424434 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_016143 exon9 c.C1073A p.A358D AGGTTGGCTTCCT 45 3 0.07 41 0 0 112 0 0.00 BAGE 85319 broad.mit.edu 37 21 11058613 11058614 + RNA INS - - A rs377480117 bycluster TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . TTTTTTTAAAGCA 7 3 0.43 10 0 0 0 0 DYRK1A 1859 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38884387 38884387 + Silent SNP T T C rs372827991 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . DYRK1A NM_001396 exon11 c.T1845C p.H615H CCACCATCACCAC 204 40 0.20 97 1 0.0103092784 85 7 1 0.14 LSS 4047 hgsc.bcm.edu;mdanderson.org 37 21 47642636 47642636 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001145436 exon4 c.C336A p.C112X CACGTGGCAAGTG 66 6 0.09 27 0 0 0 0 . 0 broad.mit.edu 37 22 18846006 18846006 + RNA SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . AGGCCGACACTCA 118 4 0.03 68 1 0.0147058824 0 0 MIR658 724028 mdanderson.org 37 22 38240344 38240344 + RNA SNP C C A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . AGCTGGCGGGCGG 13 4 0.31 17 0 0 0 0 RFTN1 23180 mdanderson.org 37 3 16358655 16358655 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_015150 exon10 c.C1417A p.Q473K CTGCTTGTTGTTT 48 4 0.08 83 0 0 4 0 0.00 COL6A5 256076 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 3 130128890 130128890 + Missense_Mutation SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_153264 exon19 c.A4580G p.K1527R GACAAAAGGGCTC 95 4 0.04 106 0 0 0 0 . 56604 bcgsc.ca 37 4 190904383 190904383 + RNA SNP G G A rs76146840 bycluster;byfrequency;by1000genomes TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . TATGCAGAAGGTC 38 20 0.53 86 3 0.0348837209 1 0 0.00 TRPC7 57113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 135692524 135692524 + Silent SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001167576 exon2 c.G552A p.L184L CTTGAGCAGCAGG 66 28 0.42 75 0 0 0 0 PCDHA2 56146 mdanderson.org 37 5 140176344 140176344 + Missense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 PCDHA2_ENST00000526136,NS,carcinoma,0,4 PCDHA2_ENST00000526136 NM_031495 exon1 c.G1795A p.A599T GTGGACGCTGACT 51 3 0.06 62 0 0 0 4 0 0 PCDHA6 56142 bcgsc.ca 37 5 140209479 140209479 + Silent SNP A A G rs201316180 by1000genomes TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . PCDHA6 NM_018909 exon1 c.A1803G p.S601S CGACTCAGGCTAC 52 4 0.08 54 0 0 442 0 0 FAM71B 153745 mdanderson.org 37 5 156590354 156590354 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_130899 exon2 c.C922A p.Q308K TCACTTGACCTGG 42 3 0.07 42 0 0 0 0 BOD1 91272 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 173043252 173043252 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001159651 exon1 c.G188A p.G63D AAAAGGCCCCGGC 25 10 0.40 28 0 0 3 3 1.00 RNF182 221687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 13977913 13977913 + Missense_Mutation SNP T T G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001165032 exon4 c.T563G p.L188W TGTGGTTGCTAGG 86 18 0.21 115 0 0 0 0 TMEM184A 202915 mdanderson.org 37 7 1586673 1586673 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001097620 exon9 c.G1157A p.G386D TGGGTGCCGGGCC 43 3 0.07 16 0 0 0 0 ELFN1 392617 mdanderson.org 37 7 1786093 1786093 + Missense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_001128636 exon2 c.G1861T p.G621C GCCTTCGGCCACA 21 2 0.10 10 0 0 0 0 FOXP2 93986 mdanderson.org 37 7 114304486 114304486 + Silent SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_148898 exon17 c.G2073T p.P691P TCAGCCGCACATG 52 3 0.06 54 0 0 0 0 UBXN8 7993 broad.mit.edu 37 8 30608866 30608867 + RNA INS - - A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . UBXN8 . . . . ATCTCTTAAAAAA 100 7 0.07 45 0 0 13 0 0 . 389652 bcgsc.ca 37 8 47512175 47512175 + RNA SNP A A G novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . CAGAAAAAAATTG 196 30 0.15 121 0 0 3 2 0.67 LRRCC1 85444 broad.mit.edu 37 8 86019547 86019547 + Missense_Mutation SNP C C T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 LRRCC1,colon,carcinoma,0,2 LRRCC1 NM_033402 exon1 c.C17T p.A6V CGGCGGCGGTGGT 146 5 0.03 64 1 0.015625 212 2 0 0 NPR2 4882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35792698 35792698 + Missense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_003995 exon1 c.G293A p.G98D TGTTAGGTCCCGG 53 17 0.32 70 0 0 0 0 . 441442 bcgsc.ca 37 9 68357375 68357375 + RNA SNP G G A rs113072271 bycluster TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . TGCTTGGCATCTA 38 7 0.18 22 0 0 1 0 0.00 NOL8 55035 mdanderson.org 37 9 95077301 95077301 + Nonsense_Mutation SNP G G A novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . NM_017948 exon7 c.C1606T p.R536X ACTGTCGGCCTCT 44 3 0.07 59 0 0 7 0 0.00 TUBBP5 643224 hgsc.bcm.edu 37 9 141071002 141071002 + RNA SNP A A G rs28433994 TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 ENSG00000254381,bladder,carcinoma,0,4 ENSG00000254381 . . . . AGCGCTATATGAC 46 4 0.09 29 0 0 0 4 9 0 0.00 FAM101B 359845 mdanderson.org 37 17 293282 293282 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAOL-01A-11D-A435-10 TCGA-XE-AAOL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84e9847c-b405-4c3b-8cd1-13c357f89650 92f7f68c-d8cb-43dd-a559-5eaf1e860ec8 . . . . . . GGAGGTGTACCTG 26 3 0.12 34 0 0 0 0