Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MIR3675 0 broad.mit.edu 37 1 17185383 17185384 + RNA INS - - C rs112074527 bycluster;by1000genomes TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . AATTTTTAGTGCA 8 3 0.38 11 1 0.0909090909 0 0 PTGFRN 5738 mdanderson.org 37 1 117487540 117487540 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_020440 exon3 c.G658A p.V220M GGGGACGTGCGCC 43 3 0.07 26 0 0 10 0 0.00 TTF2 8458 broad.mit.edu;bcgsc.ca 37 1 117644003 117644006 + Splice_Site DEL TTTG TTTG - novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 TTTG TTTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . TTF2 NM_003594 exon23 c.3346_3349del p.1116_1117del TTTAGATTTGTTT 47 10 0.21 42 0 0 92 28 0 0.00 TUFT1 7286 broad.mit.edu 37 1 151546805 151546805 + Silent SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . TUFT1 NM_020127 exon8 c.G654A p.E218E GAGAGAGGAGGAC 313 7 0.02 238 0 0 32 29 0 0.00 KDM5B 10765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 202710494 202710494 + Splice_Site SNP C C A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_006618 exon20 c.2945+1G>T . TTTTCACCTGGCC 75 17 0.23 44 0 0 1 0 0.00 EIF2D 1939 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 206781611 206781612 + Frame_Shift_Del DEL CA CA - novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . EIF2D NM_006893 exon4 c.400_401del p.134_134del AAATGGCACAGAG 819 184 0.22 595 0 0 42 51 0 0.00 CDC42BPA 8476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 227335123 227335123 + Silent SNP G G A rs139987030 byfrequency TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_003607 exon7 c.C831T p.Y277Y TTCTCCGTAAAGC 270 70 0.26 132 0 0 0 21 3 0.14 GPR158 57512 mdanderson.org 37 10 25883231 25883231 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_020752 exon9 c.G1903T p.A635S GTTCTTGCCTCAA 48 3 0.06 51 1 0.0196078431 0 0 TNKS2 80351 mdanderson.org 37 10 93617191 93617191 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_025235 exon24 c.G2998T p.V1000F CAGAAGGTTTGTA 51 3 0.06 79 0 0 44 0 0.00 B4GALNT4 338707 mdanderson.org 37 11 375478 375478 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 B4GALNT4,NS,carcinoma,0,1 B4GALNT4 NM_178537 exon9 c.C801T p.P267P CCTGCCCGGCCTG 43 3 0.07 49 0 0 0 1 203 1 0.00 MUC2 4583 mdanderson.org 37 11 1092920 1092920 + Missense_Mutation SNP C C A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002457 exon30 c.C4739A p.T1580N CACAGACCCCAAC 22 3 0.14 40 1 0.025 39 2 0.05 TTC17 55761 mdanderson.org 37 11 43469622 43469622 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_018259 exon19 c.G2736T p.E912D GGTAGAGCTGACT 45 3 0.07 62 0 0 74 0 0.00 LRP4 4038 mdanderson.org 37 11 46918500 46918500 + Missense_Mutation SNP C C T rs146670859 TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002334 exon8 c.G842A p.R281H ACACAGCGGCCTG 39 3 0.08 60 0 0 0 4 0 0.00 TCIRG1 10312 mdanderson.org 37 11 67817183 67817183 + Silent SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_006019 exon16 c.G1941A p.L647L CATCCTGCTGCTT 14 2 0.14 28 0 0 103 0 0.00 AQP11 282679 mdanderson.org 37 11 77320415 77320415 + Missense_Mutation SNP A A G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_173039 exon3 c.A809G p.K270R ATAAAAAGGAATA 38 3 0.08 54 0 0 19 0 0.00 KDM5A 5927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 432911 432911 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001042603 exon15 c.G2005A p.V669I CAGGAACAAGTTC 316 62 0.20 177 0 0 43 4 0.09 AEBP2 121536 mdanderson.org 37 12 19593200 19593200 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001114176 exon1 c.C567T p.Y189Y GGGCTACGGGACT 16 2 0.13 9 0 0 15 0 0.00 . 0 broad.mit.edu 37 12 64081924 64081925 + RNA INS - - A rs35652992 bycluster;by1000genomes TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . TTCACTTAAAAAA 12 4 0.33 5 0 0 0 0 HSP90B1 7184 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 104333319 104333319 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . HSP90B1 NM_003299 exon8 c.G1008A p.M336I ACTTATGAATGAT 242 23 0.10 238 1 0.0042016807 72 1078 191 0.18 PDS5B 23047 mdanderson.org 37 13 33222915 33222915 + Silent SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_015032 exon2 c.T6C p.A2A CATGGCTCATTCA 37 3 0.08 41 0 0 5 0 0.00 CTSG 1511 mdanderson.org 37 14 25043631 25043631 + Silent SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001911 exon4 c.C414A p.P138P CGTCCCGGGTCTC 43 3 0.07 37 0 0 5 0 0.00 CEP128 145508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 81227824 81227824 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_152446 exon16 c.C2510T p.A837V CAAGCTGCATCAA 144 14 0.10 138 0 0 12 0 0.00 ATXN3 4287 hgsc.bcm.edu 37 14 92537354 92537355 + In_Frame_Ins INS - - CTG rs76478261 TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 ATXN3,NS,carcinoma,0,7 ATXN3 NM_004993 exon10 c.916_917insCAG p.G306delinsQG GGTCCCCCTGCTG 81 29 0.36 55 0 0 46 23 0 0.00 XRCC3 7517 mdanderson.org 37 14 104169621 104169621 + Silent SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001100119 exon7 c.C450A p.R150R CTGCAGGCGCTTG 35 3 0.09 26 0 0 19 0 0.00 TYRO3 7301 mdanderson.org 37 15 41859673 41859673 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_006293 exon7 c.G899T p.C300F TGCGCTGTGCCAA 46 3 0.07 57 0 0 32 0 0.00 IL4R 3566 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 27353570 27353570 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_000418 exon4 c.C199T p.L67L GTTTTTCTGCTCT 151 8 0.05 113 0 0 22 0 0.00 RANBP10 57610 broad.mit.edu;bcgsc.ca 37 16 67762301 67762301 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . RANBP10 NM_020850 exon11 c.C1466A p.S489Y ATGCTGGACTCAT 65 21 0.32 49 1 0.0204081633 56 32 4 0.13 CRK 1398 mdanderson.org 37 17 1359235 1359235 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_005206 exon1 c.C177A p.H59Q GATGTAGTGGGAG 47 3 0.06 51 0 0 30 0 0.00 . 0 broad.mit.edu 37 17 17579770 17579771 + RNA DEL TG TG - rs72152573 alternate_allele TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . CAAGGCTGTGTGT 6 2 0.33 11 0 0 0 0 SLFN12 55106 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 33749877 33749877 + Silent SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . SLFN12 NM_018042 exon2 c.A171G p.G57G GATCACTCCCCCT 159 6 0.04 118 0 0 56 2 0 0.00 NUP85 79902 mdanderson.org 37 17 73208158 73208158 + Splice_Site SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_024844 exon4 c.361+1G>T . TTGCAAGTAAGGA 51 3 0.06 31 0 0 0 0 ESCO1 114799 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 19153599 19153600 + Frame_Shift_Del DEL CA CA - novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . ESCO1 NM_052911 exon4 c.1206_1207del p.402_403del GTGCTGCACAGAG 131 17 0.13 139 0 0 89 13 0 0.00 DCC 1630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 50278479 50278479 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_005215 exon2 c.C147T p.A49A TGATGCCGTCACA 63 12 0.19 94 0 0 6 2 0.33 PALM3 342979 mdanderson.org 37 19 14168210 14168210 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001145028 exon2 c.G79A p.A27T GGCGCGCGGCGCG 43 3 0.07 36 0 0 4 0 0.00 . 0 broad.mit.edu 37 2 38709868 38709868 + RNA SNP T T A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . TGCTGCTGCAGCC 212 5 0.02 186 0 0 3343 0 0.00 CLASP1 23332 mdanderson.org 37 2 122176293 122176293 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 CLASP1,NS,carcinoma,0,2 CLASP1 NM_015282 exon23 c.G2225A p.R742H GGGATACGGCTGC 44 3 0.07 32 0 0 0 2 0 0 SP5 389058 broad.mit.edu;mdanderson.org 37 2 171573375 171573375 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . SP5 NM_001003845 exon2 c.C658T p.P220S CACGCGCCCCGCT 56 4 0.07 30 0 0 14 7 0 0.00 HOXD13 3239 mdanderson.org 37 2 176957866 176957866 + Missense_Mutation SNP C C T rs369711414 TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_000523 exon1 c.C248T p.T83M AGCGCACGGGCTC 38 3 0.08 25 0 0 0 0 HOXD10 3236 mdanderson.org 37 2 176982179 176982179 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002148 exon1 c.C618T p.S206S CGTGAGCGGCCAG 79 4 0.05 75 0 0 5 0 0.00 PLCL1 5334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 198949565 198949565 + Missense_Mutation SNP G G A rs201197388 bycluster TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 PLCL1_ENST00000428675,right_upper_lobe,carcinoma,0,2 PLCL1_ENST00000428675 NM_006226 exon2 c.G1324A p.V442I CGAAGCGTTGAAC 122 39 0.32 133 0 0 0.001 0 2 5 2 0.40 ARPC2 10109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219103519 219103519 + Missense_Mutation SNP A A C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_005731 exon5 c.A401C p.E134A AAGAAGAGGGCAA 306 89 0.29 233 0 0 809 268 0.33 TTLL4 9654 broad.mit.edu 37 2 219617499 219617499 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . TTLL4 NM_014640 exon17 c.C2990T p.S997F ATGCATCTGTGCT 135 4 0.03 121 0 0 96 65 1 0.02 SPEG 10290 mdanderson.org 37 2 220343903 220343903 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_005876 exon23 c.C5065T p.P1689S AGGAAACCCACCG 39 3 0.08 32 0 0 15 0 0.00 PTMA 5757 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 232576664 232576664 + Missense_Mutation SNP A A G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001099285 exon3 c.A185G p.E62G GTGGGGAGGAAGA 82 18 0.22 53 0 0 2865 654 0.23 UGT1A4 54657 mdanderson.org 37 2 234628241 234628241 + Missense_Mutation SNP G G C rs200363835 bycluster;by1000genomes TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_007120 exon1 c.G775C p.G259R TTCCGAGGGGACT 166 7 0.04 139 1 0.0071942446 0.003 0 0 SIGLEC1 6614 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3673381 3673381 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . SIGLEC1 NM_023068 exon15 c.G3817A p.E1273K CACCTTCAGGCAC 36 5 0.14 37 0 0 210 7 0 0.00 KIF16B 55614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 16385486 16385486 + Silent SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001199865 exon17 c.C1756T p.L586L CAGACAGGTTCTC 74 12 0.16 59 0 0 17 1 0.06 FRG1B 284802 bcgsc.ca 37 20 29623182 29623182 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . FRG1B . . . . GCCATTGAAATGG 354 19 0.05 358 15 0.0418994413 181 205 0 0.00 FRG1B 284802 bcgsc.ca 37 20 29623214 29623214 + Missense_Mutation SNP C C T rs367590609 TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . FRG1B . . . . TGCACTCGACAAT 381 24 0.06 386 13 0.0336787565 181 177 0 0.00 NCOA6 23054 hgsc.bcm.edu 37 20 33345756 33345756 + Silent SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 NCOA6,bladder,carcinoma,0,2 NCOA6 NM_014071 exon7 c.A795G p.Q265Q TTGTTGTTGCTGC 76 4 0.05 76 1 0.0131578947 0 2 26 0 0.00 PCK1 5105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 56137903 56137903 + Silent SNP T T C rs201469307 by1000genomes TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002591 exon4 c.T558C p.D186D GGGCGATGGGGAG 133 33 0.25 149 0 0 0 0 0 LRRC3 81543 mdanderson.org 37 21 45876537 45876537 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_030891 exon2 c.G10A p.V4M GGCACCGTGCGCC 26 2 0.08 15 0 0 8 0 0.00 PRR14L 253143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32111642 32111642 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_173566 exon4 c.C2183T p.S728L CAGTTTGAAGAGG 113 47 0.42 149 0 0 7 5 0.71 FAM19A5 25817 mdanderson.org 37 22 49042516 49042516 + Nonsense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001082967 exon2 c.C220T p.Q74X AAGGGGCAGATCG 22 3 0.14 24 0 0 47 0 0.00 NFKBIZ 64332 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 101572306 101572306 + Silent SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . NFKBIZ NM_031419 exon5 c.T936C p.P312P CAGTCCTTTTCCC 138 5 0.04 108 0 0 55 7 0 0.00 EPHB1 2047 mdanderson.org 37 3 134968244 134968244 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 EPHB1_ENST00000398015,face,malignant_melanoma,0,2 EPHB1_ENST00000398015 NM_004441 exon15 c.G2757T p.W919C TGACTGGCTCAGC 48 3 0.06 53 0 0 0 2 159 0 0.00 NELFA 7469 mdanderson.org 37 4 1985675 1985675 + Missense_Mutation SNP G G A rs139794494 TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_005663 exon9 c.C1235T p.P412L ACAGCCGGAGGTG 35 3 0.09 28 0 0 0 114 0 0.00 RGS12 6002 mdanderson.org 37 4 3422429 3422429 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002926 exon10 c.C2822T p.A941V CCTCTGCGGGGAG 48 3 0.06 39 0 0 55 0 0.00 GNRHR 2798 mdanderson.org 37 4 68619536 68619536 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001012763 exon1 c.C518A p.P173Q ACCTGTGGTCCTG 51 3 0.06 63 0 0 0 0 . 0 bcgsc.ca 37 5 23305133 23305133 + RNA SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . GTGAAGTCTCCAG 45 5 0.11 49 0 0 0 0 ARSB 411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 78251240 78251240 + Missense_Mutation SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_198709 exon5 c.A776G p.Q259R TTGTCTTGGATAA 98 39 0.40 146 0 0 25 10 0.40 POU4F3 5459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 145719235 145719235 + Missense_Mutation SNP C C A rs145218099 alternate_allele TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_002700 exon2 c.C245A p.T82N ACCATACCATGAG 68 31 0.46 94 0 0 0 0 SLIT3 6586 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 168678411 168678411 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . SLIT3 NM_001271946 exon2 c.C250A p.L84I TCTTGAGCCCAGC 44 4 0.09 67 0 0 224 1 0 0.00 HIST1H3G 8355 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26271526 26271526 + Silent SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . HIST1H3G NM_003534 exon1 c.C87T p.S29S CGGCGCGCTTTTC 86 48 0.56 75 1 0.0133333333 20 4 3 0.75 TRERF1 55809 mdanderson.org 37 6 42227154 42227154 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_033502 exon9 c.G2192A p.G731D CCGTGGCCGGAGA 13 2 0.15 11 0 0 6 0 0.00 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 131931259 131931259 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_015979 exon12 c.C1022T p.S341L TGACTTGAGAGAT 108 73 0.68 106 0 0 14 9 0.64 BAZ1B 9031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 72861685 72861685 + Silent SNP A A G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_032408 exon16 c.T3753C p.S1251S GTCCTCAGAAGCA 58 25 0.43 87 0 0 72 27 0.38 PCLO 27445 mdanderson.org 37 7 82583012 82583012 + Silent SNP T T G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_014510 exon5 c.A7257C p.P2419P GGGTGGTGGTGGA 12 3 0.25 18 6 0.3333333333 0 0 NAPEPLD 222236 bcgsc.ca 37 7 102760577 102760577 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . NAPEPLD NM_001122838 exon3 c.C388A p.L130M GTCCCAGCCATGT 50 4 0.08 76 0 0 49 12 0 0.00 NAMPT 10135 broad.mit.edu 37 7 105893479 105893479 + Missense_Mutation SNP A A G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . NAMPT NM_005746 exon10 c.T1349C p.L450P TCCTCAAGGTCTC 186 5 0.03 246 0 0 37 68 0 0.00 OR2A25 392138 bcgsc.ca;mdanderson.org 37 7 143771911 143771911 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . OR2A25 NM_001004488 exon1 c.C599T p.A200V TTTTGGCAGGGGC 105 5 0.05 127 0 0 66 0 0 ESYT2 57488 bcgsc.ca 37 7 158552222 158552222 + Silent SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 ESYT2,colon,carcinoma,-2,1 ESYT2 NM_020728 exon13 c.C1518A p.S506S TGCAGAGGAAAGA 48 4 0.08 69 0 0 70 1 44 0 0.00 LYPLA1 10434 mdanderson.org 37 8 54965242 54965242 + Nonsense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 LYPLA1,colon,carcinoma,0,2 LYPLA1 NM_006330 exon7 c.G435A p.W145X TGGAAGCCAGCAA 46 3 0.07 60 0 0 0 2 53 0 0.00 GSDMD 79792 mdanderson.org 37 8 144644277 144644277 + Silent SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001166237 exon11 c.G972T p.L324L CCAGCTGGCCCTG 18 2 0.11 15 0 0 31 0 0.00 KIFC2 90990 mdanderson.org 37 8 145692490 145692490 + Silent SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_145754 exon3 c.C327T p.G109G CCTGGGCCAGGTG 31 3 0.10 57 0 0 25 0 0.00 PPP1R16A 84988 mdanderson.org 37 8 145722649 145722649 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_032902 exon1 c.G72T p.K24N GCTGAAGCATGCC 36 3 0.08 35 0 0 109 0 0.00 TAF1L 138474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 32632961 32632961 + Missense_Mutation SNP G G A novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 TAF1L,rectum,carcinoma,0,2 TAF1L NM_153809 exon1 c.C2617T p.R873C CTGTGCGTTTGAA 372 115 0.31 332 0 0 0 2 1 0 0.00 . 100289027 bcgsc.ca 37 9 45363836 45363836 + RNA SNP G G A rs199519540 bycluster TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . CAGAGCGGAACGC 17 4 0.24 30 0 0 5 0 0.00 NIPSNAP3A 25934 bcgsc.ca 37 9 107510105 107510105 + Missense_Mutation SNP C C T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . NIPSNAP3A NM_015469 exon1 c.C32T p.A11V CTCGGGCGCTGGC 30 4 0.13 37 0 0 18 54 0 0.00 PIP5KL1 138429 mdanderson.org 37 9 130687406 130687406 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001135219 exon9 c.C897A p.S299R GATGAGGCTGCTG 46 3 0.07 68 0 0 7 0 0.00 PIP5KL1 138429 mdanderson.org 37 9 130692148 130692148 + Missense_Mutation SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_001135219 exon2 c.C47A p.P16H GCCTCAGGGGAGG 24 2 0.08 26 0 0 0 0 NELFB 25920 mdanderson.org 37 9 140150062 140150062 + Missense_Mutation SNP A A G novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . NM_015456 exon1 c.A101G p.Q34R AGTTCCAGGTGGG 43 3 0.07 60 1 0.0166666667 99 0 0.00 COX3 5742 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 9637 9637 + Missense_Mutation SNP T T C novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . ENST00000362079 exon1 c.T431C p.I144T TATCAATCACCTG 24 11 0.46 38 0 0 0 0 CYP4F8 11283 hgsc.bcm.edu 37 19 15733939 15733939 + Silent SNP G G T novel TCGA-XE-AAOC-01A-11D-A435-10 TCGA-XE-AAOC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a95086d9-5cf6-47ea-b486-7459507723c9 aaba5832-4495-4245-a564-32b35dff3387 . . . . . . TACTGCGATCATG 85 4 0.05 83 0 0 0 0