Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44057100	44057100	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002840	exon9	c.G1407A	p.A469A	CGACGCGGGGCTC		36	8	0.22	36	0	0				8	2	0.25			
CPT2	1376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	53676901	53676902	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	GA	GA					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CPT2	NM_000098	exon4	c.1554_1555del	p.518_519del	GTCAGGGAGCCCT		95	33	0.35	81	0	0		34		9	0	0.00			
WDR78	79819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67313188	67313188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_207014	exon8	c.C1270T	p.R424C	GCTGACGATAAGC		213	40	0.19	215	0	0				3	1	0.33			
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	bycluster;byfrequency;byhapmap	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	NRAS,NS,haematopoietic_neoplasm,-1,2068	NRAS	NM_002524	exon3	c.A182G	p.Q61R	TCTTCTTGTCCAG		210	39	0.19	137	0	0		-1	2068	15	0	0.00			
FLG2	388698	hgsc.bcm.edu	37	1	152328051	152328051	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	FLG2,NS,carcinoma,-1,1	FLG2	NM_001014342	exon3	c.A2211G	p.S737S	TGAGCCTGATCCA		172	7	0.04	158	0	0		-1	1	0	0				
LOR	4014	broad.mit.edu	37	1	153233515	153233515	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	LOR	NM_000427	exon2	c.C90T	p.G30G	CAGCGGCGGTGGT		102	6	0.06	68	0	0		19		0	0				
SHE	126669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154461552	154461554	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	CTT	CTT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SHE	NM_001010846	exon3	c.998_1000del	p.333_334del	CTGCTCCTTCTTC		155	24	0.15	121	0	0		41		15	0	0.00			
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	157963501	157963501	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018240	exon1	c.C35G	p.S12C	CTCTCTCCGATAC		342	44	0.13	241	0	0				0	0				
ABL2	27	broad.mit.edu	37	1	179198478	179198478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ABL2	NM_001168238	exon1	c.C55A	p.P19T	CGCGGGGCTGAGG		98	7	0.07	61	2	0.0327868852		307		3	0	0.00			
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220340992	220340992	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_012414	exon25	c.G2832A	p.K944K	TATCCACTTGGCT		211	36	0.17	175	0	0				1	0	0.00			
FMN2	56776	broad.mit.edu	37	1	240371517	240371517	+	Silent	SNP	T	T	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	FMN2,NS,carcinoma,+2,1	FMN2	NM_020066	exon5	c.T3405A	p.L1135L	CCCTCTTCCCGGA		98	7	0.07	66	2	0.0303030303		451	1	3	0	0.00			
PITRM1-AS1	100507034	hgsc.bcm.edu;ucsc.edu	37	10	3190094	3190094	+	RNA	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	CACACACGAGTAA		48	9	0.19	52	0	0				8	1	0.13			
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		183	10	0.05	216	2	0.0092592593		141		0	0				
RPS6KA4	8986	bcgsc.ca	37	11	64136183	64136183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	RPS6KA4	NM_003942	exon12	c.G1342T	p.A448S	CTGGAGGCGAACA		44	4	0.09	56	0	0		85		16	0	0.00			
ADRBK1	156	mdanderson.org	37	11	67049967	67049967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001619	exon13	c.G1114T	p.A372S	AGCAGTGCCGACT		57	3	0.05	83	0	0				84	0	0.00			
SSH3	54961	mdanderson.org	37	11	67074850	67074850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_017857	exon6	c.G545T	p.S182I	GCTTCAGCGTGAC		47	3	0.06	56	0	0				2	0	0.00			
LRP5	4041	mdanderson.org	37	11	68174054	68174054	+	Missense_Mutation	SNP	G	G	A	rs147792724	alternate_allele	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002335	exon9	c.G1864A	p.A622T	CCCCACGCAACCC		50	3	0.06	84	0	0				2	0	0.00			
SIAE	54414	mdanderson.org	37	11	124518072	124518072	+	Splice_Site	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001199922	exon9	c.618-1G>T	.	ATGGACCTGAAAT		44	3	0.07	72	0	0				2	0	0.00			
CACNA1C	775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2786957	2786957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CACNA1C	NM_199460	exon43	c.A5159C	p.D1720A	CTGGAGATCTCAC		322	36	0.11	182	1	0.0054945055		1023		9	0	0.00			
HTR7P1	0	broad.mit.edu	37	12	13154583	13154583	+	RNA	DEL	G	G	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	CTGAGCGGGGGCC		10	5	0.50	3	0	0				0	0				
PXN	5829	mdanderson.org	37	12	120659500	120659500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001080855	exon6	c.C757A	p.Q253K	TCTGCTGTTGGGT		36	3	0.08	39	0	0				21	0	0.00			
GSX1	219409	broad.mit.edu;mdanderson.org	37	13	28367938	28367938	+	Silent	SNP	C	C	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	GSX1	NM_145657	exon2	c.C648G	p.G216G	CGGCGGCGGGGGT		71	3	0.04	85	1	0.0117647059		20		0	0				
SCEL	8796	mdanderson.org	37	13	78167651	78167651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_144777	exon12	c.G695T	p.S232I	GAAGGAGTCAGGA		58	3	0.05	86	0	0				0	0				
.	0	broad.mit.edu	37	14	20086237	20086237	+	RNA	DEL	T	T	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	TGTGTGTGGGGGG		8	3	0.38	5	0	0				0	0				
.	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	107048842	107048842	+	RNA	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	TCCCTGGAGCCTG		276	21	0.08	234	1	0.0042735043				15	0	0.00			
RASL12	51285	broad.mit.edu	37	15	65360091	65360091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	RASL12	NM_016563	exon1	c.G83T	p.R28L	CCGCGGCGCCCCA		40	4	0.10	39	0	0		32		0	0				
SKOR1	390598	bcgsc.ca	37	15	68117890	68117890	+	Missense_Mutation	SNP	G	G	T	rs375168768	alternate_allele	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SKOR1	.	.	.	.	CTGCGAGGGTTGC		66	4	0.06	67	0	0		144		0	0				
MAPK8IP3	23162	mdanderson.org	37	16	1817699	1817699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_015133	exon27	c.G3369T	p.Q1123H	TCTACAGGACGTG		50	3	0.06	100	0	0				57	0	0.00			
SLC9A3R2	9351	mdanderson.org	37	16	2079697	2079697	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_004785	exon2	c.C328T	p.R110X	GCCCAGCGAGGGC		36	3	0.08	73	0	0				8	0	0.00			
GSPT1	2935	broad.mit.edu	37	16	12009530	12009531	+	In_Frame_Ins	INS	-	-	CCG	rs71408216	alternate_allele	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	GSPT1	NM_001130006	exon1	c.48_49insCGG	p.G16delinsGG	GCTGCTCCCGCCG		6	2	0.33	7	0	0		71		0	0				
USP31	57478	mdanderson.org	37	16	23160065	23160065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_020718	exon1	c.C527T	p.A176V	CGGCCCGCAGGCT		25	2	0.08	30	0	0				0	0				
ZDHHC1	29800	mdanderson.org	37	16	67428910	67428910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_013304	exon10	c.C1225A	p.R409S	CCCGACGCCGGAT		45	3	0.07	76	0	0				9	0	0.00			
DUS2L	54920	mdanderson.org	37	16	68112813	68112813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001271762	exon16	c.C1406T	p.A469V	AGCTAGCACAACC		40	3	0.08	53	1	0.0188679245				73	0	0.00			
CHST4	10164	mdanderson.org	37	16	71571131	71571131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001166395	exon2	c.T551C	p.L184P	TCAACCTGCAGTC		51	3	0.06	73	0	0				0	0				
PFAS	5198	broad.mit.edu	37	17	8167575	8167576	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	PFAS	NM_012393	exon16	c.1837_1838insA	p.Q613fs	AATGGCCAGGGGG		84	8	0.10	110	0	0		91		17	0	0.00			
PIK3R5	23533	mdanderson.org	37	17	8812424	8812424	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001142633	exon3	c.C171A	p.I57I	AAGGAGGATAAGG		50	3	0.06	56	0	0				0	0				
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9683343	9683343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001220493	exon3	c.C280T	p.P94S	GCTTTGGGGTGAA		85	16	0.19	113	0	0				0	0				
SMCR7	0	broad.mit.edu;mdanderson.org	37	17	18167776	18167776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	SMCR7	NM_148886	exon4	c.C1096G	p.R366G	CGCCGGCGGCTGC		17	3	0.18	30	0	0		20		3	0	0.00			
.	0	broad.mit.edu	37	17	20806171	20806171	+	RNA	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	TTCATTCGTTTTT		5	2	0.40	12	0	0				33	0	0.00			
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		232	5	0.02	184	0	0		41		11	0	0.00			
KRT36	8689	mdanderson.org	37	17	39644941	39644941	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_003771	exon2	c.C495A	p.V165V	CTGCAGGACCAGC		43	3	0.07	56	0	0				0	0				
ATP8B3	148229	broad.mit.edu	37	19	1799763	1799764	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ATP8B3	.	.	.	.	CTGCCTCAAAAAA		6	2	0.33	4	0	0		108		7	0	0.00			
CACTIN	58509	mdanderson.org	37	19	3612401	3612401	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001080543	exon10	c.C1797T	p.S599S	GCTCTCGCTGGCG		37	3	0.08	39	0	0				80	0	0.00			
CD320	51293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8367841	8367841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_016579	exon4	c.G526A	p.G176R	CATCCCCTTCCGG		106	24	0.23	65	0	0				212	49	0.23			
RFX1	5989	mdanderson.org	37	19	14074032	14074032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002918	exon19	c.C2626A	p.H876N	TGAGGTGGAAGGA		52	3	0.06	38	0	0				34	0	0.00			
SLC27A1	376497	mdanderson.org	37	19	17581367	17581367	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_198580	exon1	c.G18A	p.A6A	GGGTGCGGGCGCG		11	2	0.18	12	0	0				0	0				
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55870472	55870472	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001145402	exon9	c.G1764T	p.P588P	CACCACCGGCTCC		141	17	0.12	141	0	0				0	0				
KIF3C	3797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	26203245	26203245	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002254	exon1	c.C1542G	p.Y514X	TACCTTGTACTTG		104	16	0.15	55	0	0				7	1	0.14			
ANKRD36BP2	0	broad.mit.edu	37	2	89100923	89100924	+	RNA	INS	-	-	G	rs369765448	bycluster	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	TAAAAAAGATACA		8	5	0.63	6	0	0				0	0				
FER1L5	90342	broad.mit.edu	37	2	97362036	97362036	+	RNA	DEL	T	T	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	FER1L5	.	.	.	.	TCAATCTTTTTTT		6	2	0.33	8	0	0		113		0	0				
GPR45	11250	mdanderson.org	37	2	105859003	105859003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_007227	exon1	c.C688T	p.H230Y	CGCGTGCACAACC		33	3	0.09	37	0	0				0	0				
ANKRD30BL	554226	broad.mit.edu	37	2	132919099	132919099	+	Silent	SNP	C	C	T	rs199974298	bycluster	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ANKRD30BL	.	.	.	.	TGTCGTCTTCTTC		64	6	0.09	87	1	0.0114942529		36		0	0				
ANKRD30BL	554226	bcgsc.ca	37	2	132919171	132919171	+	Silent	SNP	A	A	G	rs199695856	bycluster	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ANKRD30BL	.	.	.	.	ATCCCCATGGTGA		158	16	0.10	141	3	0.0212765957		36		0	0				
C20orf144	128864	mdanderson.org	37	20	32251487	32251487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_080825	exon2	c.G276C	p.R92S	GCCGAGGATGCCG		11	1	0.09	16	0	0				0	0				
BAGE	85319	broad.mit.edu	37	21	11088494	11088494	+	RNA	DEL	G	G	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	GTTGTTGTTGTTT		6	2	0.33	5	1	0.2				0	0				
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24718079	24718079	+	Silent	SNP	A	A	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001145468	exon4	c.A1131T	p.I377I	CAGCATAGAGCGC		77	14	0.18	46	0	0				11	1	0.09			
.	0	bcgsc.ca	37	22	34985577	34985577	+	RNA	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	CAAGTGCCCACGG		37	4	0.11	27	0	0				0	0				
SHANK3	85358	mdanderson.org	37	22	51169200	51169200	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_033517	exon22	c.C4614A	p.P1538P	CAGCCCCGGGGGC		20	2	0.10	20	0	0				10	0	0.00			
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	113115497	113115497	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001164496	exon14	c.A1647G	p.K549K	GAGCCCTTTTGGA		98	4	0.04	103	0	0				10	0	0.00			
EEFSEC	60678	mdanderson.org	37	3	127872594	127872594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_021937	exon1	c.G244C	p.G82R	GAGCCCGGCGAGC		9	1	0.11	10	0	0				7	0	0.00			
.	0	broad.mit.edu	37	3	133423291	133423292	+	RNA	INS	-	-	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	CTAGTAGAAAAAA		6	2	0.33	4	0	0				0	0				
ZBTB38	253461	broad.mit.edu	37	3	141164031	141164031	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	ZBTB38	NM_001080412	exon8	c.T2801G	p.M934R	AAAAAATGAGGAA		176	8	0.05	163	2	0.0122699387		92		0	0				
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179439252	179439252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_003940	exon8	c.G963C	p.Q321H	GATCCAGGAGTCG		218	42	0.19	164	0	0				4	0	0.00			
MUC4	4585	broad.mit.edu	37	3	195512110	195512110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	MUC4	NM_018406	exon2	c.A6341C	p.H2114P	GTGTCATGAAGAG		427	11	0.03	403	2	0.0049627792		1505		15	0	0.00			
NR3C2	0	broad.mit.edu;mdanderson.org	37	4	149356894	149356894	+	Silent	SNP	A	A	G	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	NR3C2	NM_001166104	exon2	c.T1119C	p.P373P	AGGAAAAGGGACC		101	4	0.04	124	1	0.0080645161		94		0	0				
CHD1	1105	broad.mit.edu;mdanderson.org	37	5	98239547	98239547	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	CHD1	NM_001270	exon3	c.G321A	p.Q107Q	CTGCTGCTGTTGC		60	4	0.07	62	0	0		137		2	0	0.00			
SHROOM1	134549	mdanderson.org	37	5	132161737	132161737	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_133456	exon1	c.C96A	p.A32A	GCTGTAGGCCGAG		19	3	0.16	14	0	0				5	0	0.00			
HARS2	23438	mdanderson.org	37	5	140071284	140071284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_012208	exon1	c.C51A	p.S17R	GCTCAGCCAGCTC		43	4	0.09	66	0	0				3	0	0.00			
RUFY1	80230	mdanderson.org	37	5	179021943	179021943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_025158	exon12	c.G1490T	p.S497I	TGTCCAGCATGAA		47	3	0.06	72	0	0				29	0	0.00			
ITPR3	3710	mdanderson.org	37	6	33655317	33655317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_002224	exon46	c.G6240T	p.E2080D	AGAGGAGGAGGCC		41	3	0.07	46	0	0				40	0	0.00			
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43034061	43034061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_201523	exon5	c.G643A	p.A215T	CAAGGTGCTACAG		69	19	0.28	95	0	0				12	7	0.58			
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	35674032	35674033	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	HERPUD2	NM_022373	exon8	c.949_950insA	p.A317fs	ATCCAGCTTGGTG		161	25	0.16	146	0	0		47		15	0	0.00			
.	0	broad.mit.edu	37	7	75729556	75729557	+	RNA	INS	-	-	A	rs61650407	bycluster;by1000genomes	TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	TATAATTAAAAAA		5	2	0.40	4	0	0				0	0				
DPY19L2P2	0	broad.mit.edu	37	7	102916153	102916153	+	RNA	DEL	A	A	-	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	.	.	.	.	AGCCATAAAAAAG		81	9	0.11	51	3	0.0588235294				1	0	0.00			
C7orf55-LUC7L2	100996928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139091951	139091951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001244584	exon7	c.G740A	p.S247N	CTTCCAGTTTTCA		107	14	0.13	77	0	0				245	56	0.23			
REPIN1	29803	mdanderson.org	37	7	150069937	150069937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_001099695	exon3	c.G1778T	p.S593I	GCAAGAGCCACAT		46	3	0.07	41	0	0				82	0	0.00			
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150501507	150501507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_018487	exon6	c.G613A	p.A205T	CTTCTGGCATCTC		94	17	0.18	102	0	0				120	1	0.01			
PLEC	5339	mdanderson.org	37	8	144992766	144992766	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_201380	exon32	c.G11634A	p.R3878R	AGTCAGCCGCTCC		52	3	0.06	36	0	0				64	0	0.00			
COL4A6	1288	broad.mit.edu;mdanderson.org	37	X	107457453	107457453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	COL4A6	NM_001847	exon6	c.C333A	p.H111Q	TCCAGGGTGGCCC		63	4	0.06	35	0	0		270		2	0	0.00			
HAUS7	55559	mdanderson.org	37	X	152721206	152721206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO6-01A-31D-A435-10	TCGA-XE-AAO6-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c2979e53-eb2f-43a8-853a-f90da33bbd9f	9ef93c95-4322-4957-bf77-80f23f328b8c	.	.	NM_017518	exon8	c.C754A	p.Q252K	CCCCTTGCTCATG		23	2	0.09	24	0	0				104	0	0.00