Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV LRRC7 57554 broad.mit.edu 37 1 70504282 70504282 + Silent SNP T T C novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . LRRC7 NM_020794 exon19 c.T2661C p.P887P TAGTCCTTTTTCT 170 5 0.03 183 1 0.0054644809 400 1 0 0.00 SCCPDH 51097 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 246922343 246922343 + Missense_Mutation SNP A A G rs142346609 bycluster;byfrequency;by1000genomes TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_016002 exon7 c.A703G p.I235V TGGCCAATTTCTT 162 24 0.15 137 0 0 0.006 77 21 0.27 P4HA1 5033 hgsc.bcm.edu 37 10 74768046 74768046 + Silent SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_000917 exon15 c.C1539A p.S513S TTTATTGGATACT 114 7 0.06 87 0 0 180 0 0.00 DENND5A 23258 mdanderson.org 37 11 9225755 9225755 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001243254 exon4 c.C401A p.A134D GTGAGGGCAAACC 49 3 0.06 74 0 0 37 0 0.00 LPXN 9404 mdanderson.org 37 11 58322361 58322361 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001143995 exon4 c.G286A p.A96T ACTGAGCAGCTGC 46 3 0.07 55 0 0 27 0 0.00 MS4A13 503497 mdanderson.org 37 11 60285575 60285575 + Missense_Mutation SNP A A T rs10736706 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001100909 exon3 c.A19T p.I7F TTTCACATTTTCA 59 2 0.03 87 0 0 0 0 PTGDR2 11251 mdanderson.org 37 11 60621017 60621017 + Missense_Mutation SNP C C T rs145143849 alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_004778 exon2 c.G179A p.R60H CGCATGCGGCAGC 43 3 0.07 58 0 0 1 0 0.00 MIR3680-1 100500917 hgsc.bcm.edu 37 11 63072405 63072405 + RNA SNP C C G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . . . . . TGTACTCTATATC 41 18 0.44 63 0 0 0 0 MYO7A 4647 mdanderson.org 37 11 76891521 76891521 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001127179 exon22 c.G2688T p.K896N GCGCAAGCATCAG 31 3 0.10 35 0 0 3 0 0.00 ARHGAP20 57569 mdanderson.org 37 11 110561320 110561320 + Silent SNP G G A rs150049858 bycluster;byfrequency TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e ARHGAP20,caecum,carcinoma,0,1 ARHGAP20 NM_020809 exon3 c.C138T p.S46S TGGAGCGCTCCTC 64 4 0.06 84 0 0 0.001 0 1 0 0 HTR3A 3359 mdanderson.org 37 11 113854000 113854000 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_000869 exon5 c.G551T p.W184L CCAGTTGGCTGCA 44 3 0.07 86 0 0 0 0 KIAA1551 55196 broad.mit.edu 37 12 32136184 32136184 + Silent SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_018169 exon4 c.G2295T p.P765P GTCACCGTTAGTT 270 4 0.01 100 0 0 619 0 0.00 KRT78 196374 mdanderson.org 37 12 53233575 53233575 + Missense_Mutation SNP C C T rs373055664 TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_173352 exon7 c.G1241A p.R414H AGCCTGCGGTAAG 44 3 0.07 48 0 0 0 0 CCDC60 160777 mdanderson.org 37 12 119954484 119954484 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e CCDC60,bladder,carcinoma,0,1 CCDC60 NM_178499 exon8 c.G940T p.E314X ACAATAGAAAATG 45 3 0.07 41 0 0 0 1 0 0 MRPS31P5 0 broad.mit.edu 37 13 52764064 52764065 + RNA INS - - A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . . . . . ATGCATTAAAAAA 6 3 0.50 9 0 0 2 0 0.00 DACH1 1602 mdanderson.org 37 13 72440446 72440446 + Silent SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_080759 exon1 c.C462T p.S154S ACTACTGCTGCTG 19 2 0.11 23 0 0 1 0 0.00 DCAF5 8816 mdanderson.org 37 14 69619649 69619649 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_003861 exon1 c.G47A p.G16D AAGAAGCCCACCA 44 3 0.07 40 0 0 22 0 0.00 KIF26A 26153 mdanderson.org 37 14 104642874 104642874 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_015656 exon12 c.G3749T p.C1250F GGGAGTGTGATAC 20 2 0.10 13 0 0 72 0 0.00 DISP2 85455 mdanderson.org 37 15 40660380 40660380 + Silent SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_033510 exon8 c.G2067A p.L689L GCGTCTGCTCTTC 23 3 0.13 38 0 0 0 0 DET1 55070 broad.mit.edu 37 15 89056263 89056263 + Silent SNP A A G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . DET1 NM_017996 exon6 c.T1605C p.P535P CTCAAAAGGGTGA 139 3 0.02 135 0 0 55 41 0 0.00 PRR25 388199 mdanderson.org 37 16 855797 855797 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001013638 exon1 c.G355T p.G119X CCACAGGGAACTC 26 3 0.12 27 0 0 0 0 PKD1 5310 mdanderson.org 37 16 2162857 2162857 + Silent SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001009944 exon13 c.G3093A p.L1031L GGGGGACAGCACG 18 2 0.11 19 0 0 17 0 0.00 PPL 5493 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 4943298 4943300 + In_Frame_Del DEL CTC CTC - novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 CTC CTC Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . PPL NM_002705 exon14 c.1565_1567del p.522_523del GGCCTTCTCCTGC 39 11 0.28 48 0 0 168 4 0 0.00 EXOC3L1 283849 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67218711 67218711 + Silent SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . EXOC3L1 NM_178516 exon13 c.C1908T p.G636G CTCCAGGCCCTGA 25 4 0.16 27 0 0 52 12 1 0.08 ANKRD11 29123 mdanderson.org 37 16 89357055 89357055 + Missense_Mutation SNP G G T rs142820281 alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e ANKRD11,NS,carcinoma,-2,1 ANKRD11 NM_001256182 exon7 c.C579A p.D193E GTTGACGTCTGCC 40 3 0.08 57 0 0 -2 1 88 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 199 15 0.08 260 10 0.0384615385 89 29 0.33 ALKBH5 54890 mdanderson.org 37 17 18087632 18087632 + Silent SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_017758 exon1 c.G75A p.A25A TAAGGCGGGCAGC 20 3 0.15 13 0 0 22 0 0.00 . 0 broad.mit.edu 37 17 20459719 20459719 + RNA DEL A A - novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . . . . . ATATATATATATA 41 11 0.27 132 3 0.0227272727 0 0 SUPT6H 6830 mdanderson.org 37 17 27028472 27028472 + Silent SNP A A G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e SUPT6H,NS,carcinoma,+1,1 SUPT6H NM_003170 exon37 c.A5010G p.A1670A CCATGCAGCCATC 38 3 0.08 57 0 0 1 1 259 1 0.00 ATAD5 79915 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29195417 29195417 + Missense_Mutation SNP T T A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . ATAD5 NM_024857 exon12 c.T3300A p.D1100E AAGAGATGAGAAA 88 26 0.30 97 1 0.0103092784 150 37 11 0.30 SLC35G3 146861 broad.mit.edu 37 17 33521194 33521194 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_152462 exon1 c.C133A p.L45M CACCCAGCAGGGC 73 5 0.07 95 0 0 3 0 0.00 C17orf96 100170841 broad.mit.edu;mdanderson.org 37 17 36830085 36830085 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001130677 exon1 c.G664A p.A222T CTGGAGCCTCGGG 63 15 0.24 59 0 0 13 4 0.31 ARL16 339231 mdanderson.org 37 17 79650804 79650804 + Missense_Mutation SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001040025 exon1 c.C52T p.P18S CACCCGGCACCCG 23 3 0.13 20 0 0 3 0 0.00 GALR1 2587 mdanderson.org 37 18 74968158 74968158 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e GALR1,NS,carcinoma,+1,1 GALR1 NM_001480 exon2 c.G711T p.K237N AAAGAAGTCTGAA 45 3 0.07 109 0 0 1 1 0 0 TMIGD2 126259 bcgsc.ca 37 19 4292842 4292842 + Silent SNP C C G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . TMIGD2 NM_144615 exon5 c.G603C p.G201G TGGGGCCCCCCGG 97 6 0.06 102 0 0 38 1 0 0.00 CD209 30835 mdanderson.org 37 19 7810421 7810421 + Missense_Mutation SNP T T C rs145850292 bycluster;byfrequency;by1000genomes TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_021155 exon4 c.A731G p.Q244R TTCAGCTGGGTCA 40 3 0.08 23 0 0 0.002 0 0 IL12RB1 3594 ucsc.edu 37 19 18180385 18180385 + Missense_Mutation SNP G G T rs191062711 by1000genomes;alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . IL12RB1 NM_005535 exon10 c.C1160A p.A387E TGCGGCGCAGTCA 39 4 0.10 31 1 0.0322580645 92 0 0 . 0 broad.mit.edu 37 19 20242475 20242475 + RNA DEL A A - novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . . . . . GGGTTCAAAGCGA 8 6 0.75 5 0 0 2 0 0.00 ATP4A 495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36050035 36050035 + Missense_Mutation SNP A A G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_000704 exon8 c.T1115C p.L372P GCCTCCAGGTTCT 97 13 0.13 89 0 0 1 0 0.00 HAUS5 23354 mdanderson.org 37 19 36104635 36104635 + Silent SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_015302 exon2 c.G102T p.L34L CAGGCTGTGTCTG 56 4 0.07 42 0 0 124 0 0.00 MLL4 8085 mdanderson.org 37 19 36212614 36212614 + Nonsense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_014727 exon3 c.G2365T p.E789X GGGGTAGAGGAGA 48 3 0.06 63 0 0 88 0 0.00 LIPE 3991 mdanderson.org 37 19 42906128 42906128 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_005357 exon10 c.C3067A p.P1023T CGTGCGGCAGGTC 17 2 0.12 21 0 0 12 0 0.00 SYMPK 8189 broad.mit.edu 37 19 46332317 46332317 + Silent SNP G G T rs373014308 alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e SYMPK,colon,carcinoma,0,3 SYMPK NM_004819 exon14 c.C1896A p.A632A ACCTGCGGCCAGG 226 6 0.03 190 1 0.0052631579 104 3 202 0 0.00 IL4I1 259307 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 50397675 50397675 + Silent SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_172374 exon7 c.C483A p.T161T GTACTGGGTGAAC 100 5 0.05 122 0 0 56 0 0.00 ZNF814 730051 bcgsc.ca 37 19 58385788 58385788 + Missense_Mutation SNP A A G novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . ZNF814 NM_001144989 exon3 c.T970C p.Y324H ATTCATAAGGTCT 132 8 0.06 141 0 0 93 21 0 0.00 MFSD2B 388931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24247062 24247062 + Missense_Mutation SNP G G C novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001080473 exon13 c.G1411C p.A471P ATCCTTGCTGGGC 67 20 0.30 95 0 0 1 1 1.00 DTNB 1838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25655860 25655860 + Missense_Mutation SNP A A T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_021907 exon14 c.T1352A p.L451Q TCCTGCAGGATCT 31 7 0.23 34 0 0 36 10 0.28 POTEF 728378 broad.mit.edu 37 2 130877755 130877755 + Missense_Mutation SNP T T C novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . POTEF NM_001099771 exon3 c.A334G p.S112G TGCTGCTCCCCCT 136 5 0.04 184 2 0.0108695652 140 0 0 KYNU 8942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 143685255 143685255 + Silent SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001199241 exon5 c.G318A p.K106K GGGGAAGCGTCCT 107 20 0.19 158 0 0 9 1 0.11 HOXD11 3237 mdanderson.org 37 2 176972598 176972598 + Missense_Mutation SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_021192 exon1 c.G515A p.G172D GCAATGGCATCTT 36 3 0.08 24 0 0 0 0 SLC4A11 83959 mdanderson.org 37 20 3209870 3209870 + Missense_Mutation SNP G G A novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001174090 exon16 c.C2018T p.A673V GCCATCGCAAAGG 47 3 0.06 66 0 0 39 0 0.00 ZBED4 9889 mdanderson.org 37 22 50279862 50279862 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e ZBED4,NS,carcinoma,+1,2 ZBED4 NM_014838 exon2 c.G2552T p.S851I TGCTGAGCCTCGC 50 3 0.06 57 0 0 1 2 26 0 0.00 UBE2E1 7324 broad.mit.edu 37 3 23848778 23848778 + Silent SNP G G T rs140553923 bycluster;by1000genomes;alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . UBE2E1 NM_003341 exon2 c.G18T p.S6S CGATTCGAGGGCC 69 3 0.04 93 0 0 15 164 0 0.00 GOLGB1 2804 broad.mit.edu 37 3 121395740 121395740 + Splice_Site SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . GOLGB1 NM_001256486 exon17 c.C9177A p.N3059K ACTTACGTTGCTG 171 6 0.04 153 0 0 319 156 1 0.01 KALRN 8997 broad.mit.edu 37 3 124438155 124438155 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . KALRN NM_001024660 exon60 c.G8799T p.L2933F ATGCTTGCAGCAT 124 4 0.03 120 0 0 556 1 0 0.00 ATP11B 23200 broad.mit.edu 37 3 182598724 182598724 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . ATP11B NM_014616 exon21 c.G2464T p.G822C GGTGATGGTGCTA 405 6 0.01 418 0 0 115 16 0 0.00 MARCH6 10299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 10415633 10415633 + Missense_Mutation SNP C C G rs182494860 bycluster;by1000genomes;alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e MARCH6,caecum,carcinoma,0,1 MARCH6 NM_005885 exon21 c.C2000G p.T667R TTTGGACGGGGAC 110 39 0.35 163 0 0 0 1 41 18 0.44 GPR98 84059 mdanderson.org 37 5 90103520 90103520 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_032119 exon73 c.G14938T p.V4980L TCAGGAGTGCAGA 49 3 0.06 81 0 0 7 0 0.00 ANKRD32 84250 mdanderson.org 37 5 94024244 94024244 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_032290 exon17 c.G2155T p.G719C AAAACTGGTGTGC 101 5 0.05 152 1 0.0065789474 39 0 0.00 SKIV2L 6499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31936112 31936112 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_006929 exon24 c.C2866T p.P956S AAGGATCCTCCCC 70 15 0.21 75 0 0 90 10 0.11 SYNCRIP 10492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 86346826 86346826 + Silent SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e SYNCRIP,right_upper_lobe,carcinoma,-2,2 SYNCRIP NM_006372 exon6 c.G525A p.E175E TTCATCCTCAAAT 257 62 0.24 232 0 0 -2 2 245 47 0.19 DACT2 168002 broad.mit.edu;mdanderson.org 37 6 168708534 168708534 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . DACT2 NM_214462 exon4 c.G1903A p.V635M TGGCCACGGGCCT 22 5 0.23 25 1 0.04 46 138 43 0.31 VPS41 27072 mdanderson.org 37 7 38902196 38902196 + Silent SNP G G T rs187909170 by1000genomes;alternate_allele TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_080631 exon4 c.C195A p.G65G AACCTTGCCATAA 127 5 0.04 72 0 0 45 0 0.00 KCP 375616 broad.mit.edu 37 7 128548304 128548305 + RNA INS - - A rs10565205 bycluster;by1000genomes TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . KCP . . . . AAGAAAGAAGAAA 8 4 0.50 5 0 0 16 0 0 TAS2R40 259286 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 142919837 142919838 + Frame_Shift_Del DEL AC AC - novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 AC AC Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . TAS2R40 NM_176882 exon1 c.665_666del p.222_222del CAAGAGACACACC 103 23 0.22 70 0 0 64 0 0 SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149486702 149486702 + Silent SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_198455 exon31 c.C4476T p.C1492C GACCTGCGTCCCC 80 18 0.23 62 0 0 0 0 DUSP26 78986 broad.mit.edu 37 8 33449599 33449599 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . DUSP26 NM_024025 exon4 c.C568A p.P190T GGTTGGGGATGAT 193 4 0.02 138 0 0 42 0 0 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 100733195 100733195 + Missense_Mutation SNP C C T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_017890 exon39 c.C7045T p.L2349F CTCACCCTTGTAC 128 23 0.18 118 0 0 7 3 0.43 KIAA0020 9933 broad.mit.edu 37 9 2837296 2837296 + Missense_Mutation SNP T T C novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . KIAA0020 NM_014878 exon3 c.A188G p.K63R ACACCCTTTTTCC 147 3 0.02 180 0 0 56 297 0 0.00 GSN 2934 mdanderson.org 37 9 124088834 124088834 + Silent SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_000177 exon12 c.G1614T p.L538L GAGCCTGTTTGGT 84 4 0.05 85 0 0 128 0 0.00 STAG2 10735 mdanderson.org 37 X 123191755 123191755 + Missense_Mutation SNP G G T novel TCGA-XE-AAO3-01A-11D-A435-10 TCGA-XE-AAO3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 765d87ae-c060-43d6-bd02-548eeb78c0ec bfa5e5f7-3f40-441f-a5ea-f48077e1495e . . NM_001042749 exon15 c.G1344T p.M448I AATGATGAAAAGA 129 5 0.04 64 0 0 173 0 0.00