Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MEGF6	1953	mdanderson.org	37	1	3411238	3411238	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001409	exon31	c.C3939T	p.C1313C	GGCGTGGCACAGG		39	3	0.08	54	0	0				8	0	0.00			
AGTRAP	57085	broad.mit.edu	37	1	11810282	11810282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	AGTRAP	.	.	.	.	CCCCGGGCCTTCC		24	6	0.25	29	0	0		9		227	2	0.01			
C1orf177	163747	mdanderson.org	37	1	55271837	55271837	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001110533	exon1	c.C48T	p.V16V	CCGCGTCGGCTCC		11	2	0.18	13	0	0				0	0				
.	343296	bcgsc.ca	37	1	79987485	79987485	+	RNA	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	AATGCATTAGTCC		39	6	0.15	49	0	0				0	0				
CELF3	11189	mdanderson.org	37	1	151678746	151678746	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_007185	exon10	c.G1080A	p.Q360Q	CTGCTGCTGTTGA		29	3	0.10	27	0	0				12	0	0.00			
RPTN	126638	broad.mit.edu	37	1	152127961	152127961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	RPTN,NS,carcinoma,-1,2	RPTN	NM_001122965	exon3	c.G1614A	p.M538I	TCTGTCCATCTGA		149	7	0.05	143	2	0.013986014		123	2	0	0				
MIR92B	0	broad.mit.edu	37	1	155165017	155165017	+	RNA	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	GTTTTTTCCCCCG		120	16	0.13	116	13	0.1120689655				0	0				
RRNAD1	51093	mdanderson.org	37	1	156706437	156706437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_015997	exon8	c.G1320T	p.E440D	TGCTGAGCTCCTG		44	3	0.07	62	0	0				51	0	0.00			
B3GALT2	8707	broad.mit.edu	37	1	193150315	193150315	+	Silent	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	B3GALT2	NM_003783	exon2	c.A378G	p.K126K	AGTACCTTTTTCA		109	4	0.04	120	0	0		44		0	0				
OR2L1P	26247	hgsc.bcm.edu	37	1	248153755	248153755	+	RNA	SNP	A	A	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	CTACTTAGTCAGC		134	7	0.05	169	0	0				0	0				
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	88476312	88476312	+	Missense_Mutation	SNP	G	G	A	rs146265188	bycluster;byfrequency;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001171610	exon10	c.G1475A	p.R492H	CCAGCCGTCCACC		124	24	0.19	170	0	0	0.002			0	0				
COL17A1	1308	mdanderson.org	37	10	105793940	105793940	+	Missense_Mutation	SNP	A	A	G	rs143582088		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000494	exon52	c.T3919C	p.Y1307H	AGCTGTAGGAGCT		47	3	0.06	57	0	0	0			11	0	0.00			
NKX1-2	390010	mdanderson.org	37	10	126136092	126136092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001146340	exon2	c.C839A	p.A280D	AAGGAGGCGGCGG		45	3	0.07	62	0	0				15	0	0.00			
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127789652	127789652	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ADAM12_ENST00000368679,NS,carcinoma,0,9	ADAM12_ENST00000368679	NM_021641	exon9	c.G909A	p.A303A	AAGCTGCGCATTG		76	10	0.13	115	0	0		0	9	1	0	0.00			
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129911726	129911726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002417	exon8	c.A1621G	p.M541V	TGTGCATTACCAG		69	31	0.45	86	0	0				2	1	0.50			
MRGPRG	386746	mdanderson.org	37	11	3239532	3239532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001164377	exon1	c.C512A	p.A171D	ACGCGGGCCAGCA		19	2	0.11	25	0	0				0	0				
OR6A2	8590	mdanderson.org	37	11	6816715	6816715	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003696	exon1	c.C225A	p.V75V	GACAGTGACATAC		69	4	0.06	74	0	0				0	0				
TNKS1BP1	85456	broad.mit.edu	37	11	57088152	57088152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	TNKS1BP1	NM_033396	exon3	c.A129C	p.K43N	CCGGGGTTTGGGC		27	5	0.19	33	7	0.2121212121		148		12	1	0.08			
RTN4RL2	349667	mdanderson.org	37	11	57243890	57243890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_178570	exon3	c.C769T	p.R257W	TTCCTGCGGCTCA		18	2	0.11	17	0	0				2	0	0.00			
ADRBK1	156	broad.mit.edu	37	11	67051341	67051341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	ADRBK1	NM_001619	exon17	c.T1412C	p.I471T	CGCTGATCCCCCC		61	6	0.10	91	2	0.021978022		51		108	0	0.00			
FOLR1	2348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71906977	71906977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_016729	exon4	c.C530A	p.P177H	GCCAACCTTTCCA		85	14	0.16	121	0	0				45	15	0.33			
RSF1	51773	broad.mit.edu	37	11	77378419	77378421	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	TCC	TCC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	RSF1	NM_016578	exon16	c.3867_3869del	p.1289_1290del	TCCTCTTCCTCCT		144	7	0.05	192	0	0		105		33	0	0.00			
PIWIL4	143689	mdanderson.org	37	11	94337214	94337214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_152431	exon13	c.G1630T	p.V544F	CCTGATGTTCAGC		49	3	0.06	89	0	0				0	0				
ARHGAP32	9743	mdanderson.org	37	11	128839438	128839438	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001142685	exon22	c.G5628A	p.E1876E	CCTGTGCTCAGGA		42	3	0.07	52	0	0				2	0	0.00			
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	133789875	133789875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IGSF9B_ENST00000321016,NS,carcinoma,+1,2	IGSF9B_ENST00000321016	NM_014987	exon18	c.C3745T	p.R1249X	ACTTTCGAGAAAA		53	9	0.17	88	0	0		1	2	1	0	0.00			
DDX12P	440081	hgsc.bcm.edu;bcgsc.ca	37	12	9571098	9571098	+	RNA	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	TCCTACGGGAGCT		247	21	0.09	107	0	0				60	0	0.00			
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	18544127	18544127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004570	exon14	c.G1944T	p.E648D	TGAAGAGCCACTA		113	6	0.05	53	0	0				0	0				
PLCZ1	89869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18872383	18872383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_033123	exon5	c.A551G	p.D184G	CAAAGGTCACTTG		419	60	0.14	186	0	0				0	0				
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	22012586	22012586	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_005691	exon20	c.T2439A	p.S813R	TCCCCCACTCAGG		336	23	0.07	141	0	0				0	0				
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	40713816	40713816	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_198578	exon34	c.T4854A	p.C1618X	AGGTTGTCCAAAA		376	75	0.20	305	0	0				1	0	0.00			
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	56088587	56088587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001144996	exon15	c.C2183A	p.S728X	ACCCCTGAGTAGT		111	7	0.06	93	0	0				31	0	0.00			
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	113623183	113623183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024072	exon1	c.G74T	p.G25V	CGGAGCCCTTTCT		42	6	0.14	56	0	0				25	2	0.08			
EP400	57634	broad.mit.edu	37	12	132446460	132446460	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	EP400,NS,malignant_melanoma,0,1	EP400	NM_015409	exon2	c.G1296A	p.E432E	GGAGGAGGAAGAG		62	3	0.05	56	0	0		370	1	5	0	0.00			
FRY	10129	hgsc.bcm.edu	37	13	32735280	32735280	+	Splice_Site	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_023037	exon17	c.1785-1G>T	.	ATTCTAGGGGTGA		67	4	0.06	77	0	0				0	0				
IRF9	10379	mdanderson.org	37	14	24634116	24634116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006084	exon7	c.C943T	p.P315S	CTGCTGCCCAGCA		30	3	0.10	43	0	0				288	0	0.00			
MAP3K9	4293	mdanderson.org	37	14	71275530	71275530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_033141	exon1	c.G359A	p.R120H	TGGCAGCGGCTGG		38	3	0.08	30	0	0				5	0	0.00			
PAPLN	89932	mdanderson.org	37	14	73727426	73727426	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_173462	exon16	c.C1914T	p.C638C	CGGGTGCTGCCCT		42	3	0.07	33	0	0				6	0	0.00			
MARK3	4140	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	103946751	103946751	+	Nonsense_Mutation	SNP	C	C	T	rs372126503		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	MARK3	NM_001128919	exon14	c.C1510T	p.R504X	ATGACACGACGAA		233	27	0.12	208	1	0.0048076923		86		88	7	0.08			
CKMT1B	1159	hgsc.bcm.edu	37	15	43891085	43891085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020990	exon9	c.G1072T	p.V358L	GGAGGAGTGGACA		94	4	0.04	99	0	0				15	0	0.00			
TELO2	9894	mdanderson.org	37	16	1552719	1552719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_016111	exon14	c.G1727A	p.R576H	GGCTGCGCCAGAG		37	3	0.08	44	0	0				50	0	0.00			
NDE1	54820	mdanderson.org	37	16	15790697	15790697	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001143979	exon9	c.C927T	p.S309S	CACCAGCGTGCCT		46	3	0.07	46	0	0				72	0	0.00			
EEF2K	29904	bcgsc.ca;mdanderson.org	37	16	22274454	22274454	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	EEF2K	NM_013302	exon12	c.C1323T	p.S441S	GGACAGCGGATAC		70	5	0.07	97	0	0		142		5	0	0.00			
ERN2	10595	mdanderson.org	37	16	23703328	23703328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ERN2_ENST00000256797,colon,carcinoma,0,1	ERN2_ENST00000256797	NM_033266	exon19	c.C2476A	p.H826N	AGGGGTGGGCCAG		44	3	0.07	45	0	0		0	1	2	0	0.00			
IRX3	79191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	54319129	54319129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	IRX3,NS,carcinoma,+1,1	IRX3	NM_024336	exon2	c.G664A	p.G222S	GTTTGCCGTCCTC		37	6	0.16	42	0	0		1	1	9	0	0.00			
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67416139	67416139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	LRRC36,scalp,carcinoma,+2,1	LRRC36	NM_018296	exon13	c.T2034A	p.H678Q	TCTCCATGAAAGT		113	31	0.27	130	0	0		2	1	0	0				
ENKD1	84080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67697165	67697165	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_032140	exon7	c.G940C	p.A314P	TCTGGGCTCTCAG		68	11	0.16	54	0	0				43	8	0.19			
BANP	54971	mdanderson.org	37	16	88014644	88014644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001173540	exon3	c.G91T	p.V31F	TCAGTTGTTTTGG		23	3	0.13	44	0	0				17	0	0.00			
ZZEF1	23140	mdanderson.org	37	17	3916822	3916822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_015113	exon52	c.G8500A	p.V2834M	AGGCCACGCCCAC		67	4	0.06	83	1	0.0120481928				14	0	0.00			
SPNS3	201305	mdanderson.org	37	17	4352590	4352590	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_182538	exon7	c.G831T	p.L277L	AGCCCTGGGGTTC		33	3	0.09	41	0	0				2	0	0.00			
NLRP1	22861	mdanderson.org	37	17	5462911	5462911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_014922	exon4	c.T1105C	p.C369R	CTCTGCAGCTGAA		52	3	0.06	94	0	0				10	0	0.00			
MYH13	8735	mdanderson.org	37	17	10236459	10236459	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003802	exon19	c.C2106A	p.V702V	CTCGAGGACCCCG		41	3	0.07	52	0	0				0	0				
FLII	2314	broad.mit.edu;mdanderson.org	37	17	18150241	18150241	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	FLII	NM_002018	exon22	c.C2802T	p.Y934Y	GAAGACGTAGCAG		39	3	0.08	93	0	0		79		180	7	0.04			
SLFN12	55106	broad.mit.edu	37	17	33749877	33749877	+	Silent	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SLFN12	NM_018042	exon2	c.A171G	p.G57G	GATCACTCCCCCT		214	5	0.02	148	2	0.0135135135		56		1	0	0.00			
FMNL1	752	ucsc.edu	37	17	43323271	43323271	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	FMNL1	NM_005892	exon24	c.G3021A	p.W1007X	ACAGTGGAAAAAA		134	4	0.03	84	1	0.0119047619		78		96	15	0.16	rescued with RNA-seq		
SAMD14	201191	broad.mit.edu	37	17	48195666	48195666	+	Silent	SNP	C	C	T	rs145637965	alternate_allele	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SAMD14	NM_001257359	exon3	c.G69A	p.T23T	TCTGGCCGTCTCT		63	4	0.06	49	0	0		36		6	0	0.00			
SMURF2	64750	broad.mit.edu;ucsc.edu	37	17	62543750	62543750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	SMURF2	NM_022739	exon17	c.G2039A	p.R680Q	GGCACTCGAGAGG		97	4	0.04	89	1	0.0112359551		63		66	7	0.11			
RBFOX3	146713	mdanderson.org	37	17	77090551	77090551	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001082575	exon14	c.G918A	p.E306E	GCTGTAGGTCGCC		44	3	0.07	38	0	0				5	0	0.00			
OSBPL1A	114876	mdanderson.org	37	18	21912990	21912990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_080597	exon7	c.C541A	p.H181N	CACAATGCAAGGG		124	5	0.04	126	0	0				3	0	0.00			
C2CD4C	126567	broad.mit.edu	37	19	408019	408019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	C2CD4C	NM_001136263	exon2	c.G343A	p.E115K	CACTCTCGATCTG		38	3	0.08	47	0	0		13		22	1	0.05			
DIRAS1	148252	mdanderson.org	37	19	2717287	2717287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_145173	exon2	c.T518C	p.M173T	AGGCTCATGTTCC		23	3	0.13	33	0	0				10	0	0.00			
SIRT6	51548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4179130	4179130	+	Silent	SNP	G	G	A	rs200245532		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	SIRT6,NS,carcinoma,-2,1	SIRT6	NM_016539	exon3	c.C348T	p.D116D	GAGCCCGTCCACG		34	8	0.24	49	0	0		-2	1	53	5	0.09			
TMED1	11018	mdanderson.org	37	19	10943839	10943839	+	Silent	SNP	G	G	T	rs142246182		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006858	exon4	c.C516A	p.L172L	TAGCGTGAGCATC		48	3	0.06	71	0	0	0			91	0	0.00			
DOCK6	57572	mdanderson.org	37	19	11323902	11323902	+	Missense_Mutation	SNP	C	C	T	rs140032702	bycluster;by1000genomes	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020812	exon35	c.G4441A	p.A1481T	CGCTGGCGTGCGT		39	3	0.08	47	0	0	0			57	0	0.00			
DOCK6	57572	mdanderson.org	37	19	11361651	11361651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020812	exon6	c.C619A	p.L207I	GCTCTAGCAGAGA		37	3	0.08	75	0	0				17	0	0.00			
SLC27A1	376497	mdanderson.org	37	19	17597498	17597498	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_198580	exon2	c.C294T	p.A98A	GGATGCCGGGACC		23	3	0.13	30	0	0				7	0	0.00			
KIAA0355	9710	broad.mit.edu;bcgsc.ca	37	19	34818343	34818346	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	AGAA	AGAA					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	KIAA0355	NM_014686	exon4	c.723_726del	p.241_242del	ACTAAGAGAAAGA		47	9	0.19	80	0	0		105		6	0	0.00			
BCL3	602	mdanderson.org	37	19	45261637	45261637	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_005178	exon7	c.C1026T	p.N342N	CCACAACGACACG		21	3	0.14	16	0	0				60	3	0.05			
PNMAL2	57469	broad.mit.edu;mdanderson.org	37	19	46998785	46998785	+	Translation_Start_Site	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	PNMAL2	.	.	.	.	GCTGCAGCGCACG		73	4	0.05	73	0	0		44		1	0	0.00			
PRKD2	25865	broad.mit.edu;mdanderson.org	37	19	47214195	47214195	+	Silent	SNP	G	G	A	rs143631618		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	PRKD2	NM_016457	exon3	c.C480T	p.F160F	TAGGCCGAAGAGC		39	3	0.08	48	0	0		94		36	6	0.17			
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21230922	21230922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000384	exon26	c.G8818A	p.G2940R	GTGTTCCCTCATC		176	50	0.28	217	0	0				12	6	0.50			
DNMT3A	1788	mdanderson.org	37	2	25462078	25462078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_175629	exon20	c.C2329A	p.P777T	TCACAGGGTTGGA		53	3	0.06	53	0	0				97	0	0.00			
POLE4	56655	broad.mit.edu;bcgsc.ca	37	2	75185871	75185871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	POLE4	NM_019896	exon1	c.C65T	p.A22V	GGGAGGCAGCGGC		98	24	0.24	100	1	0.01		2		67	19	0.28			
RETSAT	54884	hgsc.bcm.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	G	A	rs149307146	bycluster	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	RETSAT,NS,carcinoma,0,1	RETSAT	NM_017750	exon9	c.C1475T	p.S492F	ACAAAGGAGTTTT		154	8	0.05	171	1	0.0058479532	0	0	1	29	0	0.00			
MAP3K2	10746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128066276	128066276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_006609	exon15	c.C1519T	p.R507W	GAAGCCGTTTGCT		81	22	0.27	82	0	0				8	2	0.25			
CYTIP	9595	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	158287440	158287440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	CYTIP	NM_004288	exon4	c.C314T	p.S105L	ATTTCCGAGGAGC		166	6	0.04	187	0	0		45		32	0	0.00			
BAZ2B	29994	broad.mit.edu	37	2	160310243	160310243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	BAZ2B	NM_013450	exon4	c.T215C	p.V72A	TGGCTGACCATTG		113	4	0.04	97	4	0.0412371134		196		4	0	0.00			
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170115533	170115533	+	Splice_Site	SNP	A	A	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004525	exon18	c.2513+2T>G	.	ACACTTACCCGGC		222	67	0.30	186	0	0				0	0				
BLCAP	10904	ucsc.edu	37	20	36147563	36147563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	BLCAP	NM_006698	exon2	c.A14G	p.Q5R	AGCCACTGGAGGC		118	1	0.01	126	0	0		7		65	8	0.12			
TIAM1	7074	broad.mit.edu	37	21	32508274	32508274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	TIAM1	NM_003253	exon24	c.A3860G	p.K1287R	GGTTCCTTTTTCC		192	5	0.03	204	0	0		522		37	0	0.00			
GAB4	128954	bcgsc.ca;mdanderson.org	37	22	17473065	17473065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	GAB4	NM_001037814	exon2	c.C176A	p.A59D	CTCCAGGCCTAAG		97	5	0.05	114	0	0		95		0	0				
MIR1249	100302149	mdanderson.org	37	22	45596869	45596869	+	RNA	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	CAGCCAGAGGGAA		42	3	0.07	53	0	0				0	0				
HDAC11	79885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13545733	13545733	+	Silent	SNP	C	C	T	rs145222745		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024827	exon9	c.C789T	p.L263L	CATCCTCGAGGGG		125	28	0.22	127	0	0	0			28	8	0.29			
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48508314	48508314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	TREX1,lower_third,carcinoma,-1,1	TREX1	NM_016381	exon1	c.T425C	p.L142P	CAGGTCTGAGCAC		61	7	0.11	43	0	0		-1	1	62	3	0.05			
USP19	10869	mdanderson.org	37	3	49154692	49154692	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001199160	exon6	c.C709A	p.R237R	TAGCCCGGTGGGG		30	3	0.10	19	0	0				43	0	0.00			
CCDC54	84692	broad.mit.edu	37	3	107096725	107096725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	CCDC54	NM_032600	exon1	c.G291T	p.K97N	GGAAAAGACTGAC		145	4	0.03	116	0	0		56		0	0				
MGLL	11343	mdanderson.org	37	3	127440001	127440001	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001256585	exon5	c.C405T	p.G135G	GATGGCGCCTCCC		32	3	0.09	35	0	0				22	0	0.00			
EPHB1	2047	mdanderson.org	37	3	134960009	134960009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_004441	exon13	c.G2366T	p.R789I	CTGTGAGATGGAC		79	5	0.06	92	0	0				8	0	0.00			
TRMT44	152992	mdanderson.org	37	4	8470062	8470062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_152544	exon9	c.G1916T	p.W639L	AGACCTGGAATGG		40	3	0.08	44	0	0				16	0	0.00			
OTUD4	54726	hgsc.bcm.edu	37	4	146059041	146059041	+	Silent	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	OTUD4,bladder,carcinoma,0,2	OTUD4	NM_001102653	exon21	c.T2691C	p.H897H	GGGAGGATGAGCC		106	6	0.06	111	0	0		0	2	7	0	0.00			
SLC25A4	291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186066080	186066080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001151	exon2	c.A274G	p.K92E	GCCTTCAAGGACA		71	15	0.21	157	0	0				39	8	0.21			
SLC6A18	348932	mdanderson.org	37	5	1246014	1246014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_182632	exon12	c.G1708T	p.A570S	CGCGCCGCCTGTG		28	3	0.11	33	0	0				0	0				
PCDHB14	56122	mdanderson.org	37	5	140604725	140604725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_018934	exon1	c.C1648G	p.L550V	CGCGTGCTGGTGC		37	5	0.14	44	1	0.0227272727				1	0	0.00			
SAP30L	79685	mdanderson.org	37	5	153826274	153826274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_024632	exon1	c.G110A	p.R37H	GCGAGCGCTGCGT		17	2	0.12	17	0	0				10	0	0.00			
.	0	broad.mit.edu	37	6	29232126	29232126	+	RNA	DEL	A	A	-	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	CAAGGCAAAAAAA		6	3	0.50	7	0	0				0	0				
RNU6-71	100873774	hgsc.bcm.edu	37	6	56504477	56504477	+	RNA	SNP	T	T	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	.	.	.	.	AAGGTTTAAAAAA		149	5	0.03	158	0	0				0	0				
TULP4	56995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	158873228	158873228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_020245	exon5	c.A787G	p.T263A	AGCTTCACCTCGG		104	10	0.10	128	0	0				3	0	0.00			
KCTD7	154881	mdanderson.org	37	7	66094066	66094066	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001167961	exon1	c.G15T	p.T5T	AGTCACGGGGCGG		51	3	0.06	51	0	0				0	0				
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95225507	95225507	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002612	exon1	c.C99T	p.S33S	CAGCGGGGACGGG		165	20	0.12	175	0	0				2	0	0.00			
AP4M1	9179	broad.mit.edu	37	7	99699564	99699564	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	AP4M1	NM_004722	exon2	c.G120A	p.L40L	GGGACTGCCAGGA		259	6	0.02	288	0	0		39		42	0	0.00			
ZAN	7455	broad.mit.edu	37	7	100331551	100331552	+	RNA	INS	-	-	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	ZAN	.	.	.	.	CTTTCTCTTTTTT		9	3	0.33	16	0	0		658		0	0				
TRPV5	56302	mdanderson.org	37	7	142606735	142606735	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	TRPV5,NS,carcinoma,+1,1	TRPV5	NM_019841	exon14	c.C1816A	p.R606R	GCTTCCGCTCCAG		24	3	0.13	32	0	0		1	1	0	0				
REPIN1	29803	broad.mit.edu	37	7	150069590	150069590	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	REPIN1	NM_001099695	exon3	c.G1431T	p.A477A	GGTGGCGCACTCG		6	2	0.33	16	0	0		74		32	0	0.00			
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	10468935	10468935	+	Silent	SNP	C	C	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_178857	exon4	c.G2673T	p.G891G	GCGTGTCCCCTCC		27	12	0.44	33	0	0				0	0				
TNFRSF10B	8795	mdanderson.org	37	8	22880439	22880439	+	Silent	SNP	C	C	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_003842	exon9	c.G1068A	p.P356P	CATGAGCGGCTCC		40	3	0.08	51	0	0				74	0	0.00			
ATAD2	29028	bcgsc.ca;mdanderson.org	37	8	124383532	124383532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	ATAD2,NS,carcinoma,+2,2	ATAD2	NM_014109	exon5	c.C583T	p.R195C	GTCTACGCATCTT		276	22	0.08	264	3	0.0113636364		160	2	17	2	0.12			
BAI1	575	mdanderson.org	37	8	143623718	143623718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001702	exon27	c.A4123C	p.T1375P	CCGCAGACCCGCC		35	14	0.40	62	19	0.3064516129				8	4	0.50			
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	KANK1_ENST00000382303,NS,carcinoma,0,4	KANK1	NM_001256876	exon10	c.G3105A	p.E1035E	AGAAGAGGAGGAG		72	3	0.04	90	1	0.0111111111		231	4	16	0	0.00			
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124094758	124094758	+	Silent	SNP	G	G	C	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_000177	exon17	c.G2226C	p.T742T	GCGGACGCCCATC		103	19	0.18	107	0	0				980	153	0.16			
OR1Q1	0	broad.mit.edu	37	9	125376711	125376713	+	RNA	DEL	TAG	TAG	-	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	TAG	TAG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	OR1Q1	.	.	.	.	TAATAATAGTAGT		6	2	0.33	5	0	0		46		0	0				
OR1B1	347169	hgsc.bcm.edu	37	9	125391778	125391778	+	Missense_Mutation	SNP	C	C	A	rs77073101	bycluster	TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001004450	exon1	c.G37T	p.V13F	AAAAAACCGGAGA		72	6	0.08	74	0	0				0	0				
UCK1	83549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134404415	134404415	+	Silent	SNP	G	G	A	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001261451	exon5	c.C534T	p.D178D	GCGCACGTCCCGG		67	9	0.13	93	0	0				61	12	0.20			
BRD3	8019	mdanderson.org	37	9	136915676	136915676	+	Silent	SNP	G	G	T	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_007371	exon5	c.C534A	p.S178S	CGCTGGGGAGACA		21	3	0.14	23	0	0				22	0	0.00			
ASB9	140462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	15276999	15277000	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	GG	GG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_001168530	exon2	c.C162A	p.NL54KF	TGATGAGGTTCCT		190	25	0.13	155	0	0				6	0	0.00			
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	155239804	155239804	+	Missense_Mutation	SNP	C	C	G	rs71382248		TCGA-X3-A8G4-01A-11D-A435-10	TCGA-X3-A8G4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a9558e63-9b5c-4cd2-95a3-3a803277359f	e1afb0d5-ca80-4fdb-86c8-27443f74b3a6	.	.	NM_002186	exon9	c.C1296G	p.S432R	GAGCAGCAGCAGC		112	6	0.05	125	0	0				1	0	0.00