Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PHC2	1912	mdanderson.org	37	1	33820462	33820462	+	Missense_Mutation	SNP	G	G	T	rs139804561	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_198040	exon7	c.C1369A	p.Q457K	GCAGTTGTAAGAT		40	3	0.08	51	0	0				1	0	0.00			
STK40	83931	mdanderson.org	37	1	36820843	36820843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032017	exon6	c.C534A	p.F178L	GTCGTAGAAGATT		44	3	0.07	48	0	0				32	0	0.00			
PFKFB2	5208	ucsc.edu	37	1	207252307	207252307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PFKFB2	NM_001018053	exon15	c.G1359T	p.E453D	AGCAGAGACCACA		37	4	0.11	38	0	0		70		2	0	0.00			
GTPBP4	23560	broad.mit.edu	37	10	1058562	1058562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	GTPBP4	NM_012341	exon14	c.A1502G	p.K501R	AAGAAAAGAATAC		192	4	0.02	199	0	0		57		166	0	0.00			
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37508722	37508722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_052997	exon34	c.T3914C	p.M1305T	GGAAAATGCAACA		74	14	0.19	90	0	0				0	0				
PIDD	55367	mdanderson.org	37	11	802057	802057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_145887	exon7	c.C1210A	p.Q404K	GGGCCTGCGGTGG		40	3	0.08	67	0	0				37	0	0.00			
TRIM3	10612	mdanderson.org	37	11	6478097	6478097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_006458	exon7	c.C859A	p.P287T	GCTCCGGGAAGGC		38	3	0.08	53	0	0				19	0	0.00			
SLC5A12	159963	mdanderson.org	37	11	26718754	26718754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_178498	exon8	c.C997A	p.L333M	CTGGCAGTCCTGG		53	3	0.06	61	0	0				0	0				
DSCAML1	57453	mdanderson.org	37	11	117351904	117351904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020693	exon13	c.C2821A	p.Q941K	TGAGTTGGATCAA		115	5	0.04	137	0	0				0	0				
SRPR	6734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126135872	126135872	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	SRPR,NS,carcinoma,+1,1	SRPR	NM_003139	exon8	c.G1037C	p.R346P	TGATCACGCATCT		63	10	0.16	91	0	0		1	1	232	138	0.59			
AQP6	363	broad.mit.edu	37	12	50369380	50369380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	AQP6	NM_001652	exon4	c.G775A	p.A259T	ACAGGGGCAGGGG		217	5	0.02	107	0	0		25		2	0	0.00			
TBC1D15	64786	mdanderson.org	37	12	72266784	72266784	+	Splice_Site	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001146213	exon3	c.204+1G>T	.	AGAAAGGTATTTA		50	3	0.06	48	0	0				2	0	0.00			
PUS1	80324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132426156	132426156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_025215	exon5	c.C864G	p.S288R	CCAGAGCTTCATG		122	12	0.10	108	0	0				163	26	0.16			
FAM194B	220081	ucsc.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352	bycluster	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	FAM194B	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC		156	17	0.11	213	1	0.0046948357		42		0	0				
MED4-AS1	100873965	hgsc.bcm.edu	37	13	48651479	48651479	+	RNA	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	AGAACAGCTCTAT		43	11	0.26	57	0	0				1	0	0.00			
GPC5	2262	mdanderson.org	37	13	92051332	92051332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004466	exon1	c.G32A	p.R11H	GCTTTCGCTGCCT		31	3	0.10	49	0	0				0	0				
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28474449	28474449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004667	exon34	c.C5164T	p.P1722S	TAAAAGGCGGGAT		233	25	0.11	214	0	0				11	1	0.09			
.	0	broad.mit.edu	37	15	32828941	32828973	+	RNA	DEL	GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT	GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT	-	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT	GCCCCAGCCGGGCCCCCTCGCGCCGCTGCGGCT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	GCTCCAGCCCCAG		14	3	0.21	8	0	0				0	0				
RYR3	6263	broad.mit.edu;mdanderson.org	37	15	34048566	34048566	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	RYR3	NM_001243996	exon59	c.T8575G	p.F2859V	AAATTCTTTGCCA		84	5	0.06	76	0	0		760		0	0				
MYO5A	4644	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	52645822	52645822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000259	exon27	c.C3601G	p.L1201V	ATTCCAGTTCTGC		105	9	0.09	110	0	0				49	11	0.22			
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75015099	75015099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000499	exon2	c.C340A	p.L114I	TGATGAGGGTGAA		70	10	0.14	49	0	0				0	0				
AP3B2	8120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83357926	83357926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004644	exon3	c.C248T	p.A83V	TTACAGGCCACGT		125	15	0.12	105	0	0				26	9	0.35			
AKAP13	11214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86076953	86076953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	AKAP13	NM_007200	exon4	c.C320G	p.A107G	CCAGTGCTGGAAA		189	23	0.12	169	0	0		394		11	2	0.18			
WDR24	84219	mdanderson.org	37	16	737638	737638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032259	exon2	c.C583T	p.R195C	CGGGACGCCGGAT		47	3	0.06	65	0	0				63	0	0.00			
ARHGAP17	55114	mdanderson.org	37	16	24950698	24950698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001006634	exon17	c.C1711A	p.P571T	CGCCTGGGCTCGG		32	3	0.09	32	0	0				42	0	0.00			
ADCY7	113	mdanderson.org	37	16	50334626	50334626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001114	exon8	c.G1077T	p.K359N	CCCCAGGCAGGTG		44	3	0.07	55	0	0				16	0	0.00			
RTN4RL1	146760	mdanderson.org	37	17	1840549	1840549	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_178568	exon2	c.C567A	p.G189G	GCCCGGGCCCAGA		27	3	0.11	28	0	0				12	0	0.00			
NLGN2	57555	mdanderson.org	37	17	7311730	7311730	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020795	exon1	c.C156T	p.R52R	AGTGCGCGGTGTG		22	3	0.14	34	0	0				4	0	0.00			
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7637852	7637852	+	Silent	SNP	A	A	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020877	exon6	c.A804T	p.T268T	GGAGACAGGAGAA		53	8	0.15	66	0	0				0	0				
DNAH2	146754	mdanderson.org	37	17	7726883	7726883	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020877	exon73	c.C11266T	p.Q3756X	TTTGAGCAGTACC		75	4	0.05	79	0	0				1	0	0.00			
DNAH9	1770	bcgsc.ca;mdanderson.org	37	17	11583113	11583113	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	DNAH9,colon,carcinoma,0,1	DNAH9	NM_001372	exon18	c.C3393T	p.S1131S	TGAGAGCGGCTTA		44	5	0.11	70	0	0		695	1	0	0				
RAI1	10743	ucsc.edu	37	17	17697105	17697105	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	RAI1	NM_030665	exon3	c.G843A	p.Q281Q	GCAGCAGCAGCAG		36	4	0.11	58	1	0.0172413793		121		10	0	0.00			
CCDC144B	284047	mdanderson.org	37	17	18513400	18513400	+	RNA	SNP	G	G	A	rs377459168	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	GCACAGGTCATGG		406	35	0.09	452	0	0				0	0				
PIGS	94005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	26897967	26897967	+	Silent	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_033198	exon3	c.G189T	p.V63V	GACAGGCACCATG		154	10	0.06	134	0	0				40	7	0.18			
PSMD11	5717	broad.mit.edu	37	17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PSMD11	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT		224	7	0.03	184	2	0.0108695652		41		98	0	0.00			
JUP	3728	mdanderson.org	37	17	39925795	39925795	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002230	exon3	c.C343A	p.R115R	CCAGTCGCTGCAG		42	3	0.07	43	0	0				660	0	0.00			
GFAP	2670	mdanderson.org	37	17	42989051	42989051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002055	exon5	c.C895A	p.L299M	CGCGCAGAGACTC		35	3	0.09	41	0	0				0	0				
MPO	4353	ucsc.edu;bcgsc.ca	37	17	56355398	56355398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	MPO,NS,carcinoma,0,1	MPO	NM_000250	exon7	c.G994T	p.A332S	TGAGCGCGTTGAT		36	4	0.11	41	0	0		114	1	3	0	0.00			
TBC1D3P1-DHX40P1	0	broad.mit.edu	37	17	58053027	58053027	+	RNA	DEL	A	A	-	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	CATCTCAAAAAAA		8	3	0.38	5	0	0				0	0				
USP32	84669	mdanderson.org	37	17	58343352	58343352	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032582	exon8	c.C912A	p.R304R	ATCAGTGCGGTTG		46	3	0.07	63	0	0				48	0	0.00			
BRIP1	83990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59934456	59934456	+	Silent	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032043	exon4	c.A342G	p.P114P	AGAAGGTGGTGTG		152	26	0.17	137	0	0				10	3	0.30			
ACE	1636	mdanderson.org	37	17	61574511	61574511	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000789	exon25	c.G3705T	p.G1235G	AGAAGGGCCCCTC		23	3	0.13	31	0	0				207	0	0.00			
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	76471541	76471541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173628	exon54	c.A8330G	p.E2777G	GCGTCCTCAAACA		78	7	0.09	42	0	0				0	0				
LRRC45	201255	mdanderson.org	37	17	79981644	79981644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_144999	exon1	c.T125C	p.L42P	AAAGCCTGACGGT		16	2	0.13	24	0	0				52	0	0.00			
BSG	682	mdanderson.org	37	19	571563	571563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_198591	exon1	c.G16T	p.A6S	TCGGACGCGTCTC		35	3	0.09	34	0	0				10	0	0.00			
BSG	682	mdanderson.org	37	19	577807	577807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001728	exon2	c.G101T	p.R34M	AGCAGAGGTGGGT		42	3	0.07	22	0	0				3	0	0.00			
ABCA7	10347	hgsc.bcm.edu	37	19	1047523	1047523	+	Silent	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	ABCA7,rectum,carcinoma,0,1	ABCA7	NM_019112	exon16	c.C2139T	p.G713G	CGAGGGCGCGCAG		17	4	0.24	11	2	0.1818181818		0	1	4	3	0.75			
ZNF844	284391	mdanderson.org	37	19	12187930	12187930	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001136501	exon4	c.G1995T	p.L665L	CACACTGGAGTGA		37	3	0.08	59	0	0				17	0	0.00			
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13249085	13249085	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_052876	exon6	c.G1449C	p.K483N	GCTCAAGGCTGAG		74	16	0.22	74	0	0				150	45	0.30			
CD97	976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14517723	14517723	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_078481	exon17	c.C2158G	p.Q720E	CTCACTCAGAAGT		99	18	0.18	81	0	0				61	5	0.08			
NOTCH3	4854	broad.mit.edu;mdanderson.org	37	19	15276316	15276316	+	Missense_Mutation	SNP	C	C	T	rs372834264		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	NOTCH3	NM_000435	exon31	c.G5678A	p.R1893Q	CGGTTTCGGATGA		23	3	0.13	20	0	0		340		47	4	0.09			
WDR88	126248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33647335	33647335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173479	exon7	c.A884G	p.K295R	GGGATAAAAACTT		77	13	0.17	74	0	0				0	0				
ZFP30	22835	broad.mit.edu;mdanderson.org	37	19	38125922	38125922	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ZFP30	NM_014898	exon6	c.C1520A	p.S507X	AGATGTGAATGTT		108	5	0.05	78	0	0		68		38	0	0.00			
MEGF8	1954	mdanderson.org	37	19	42853771	42853771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	MEGF8_ENST00000334370,NS,carcinoma,-1,9	MEGF8_ENST00000334370	NM_001271938	exon14	c.G2419T	p.G807C	ATCCAGGGCCAGC		32	3	0.09	32	0	0		-1	9	4	0	0.00			
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49658348	49658348	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_002152	exon1	c.C147A	p.L49L	CTCGGAGAGCCCG		67	10	0.15	64	0	0				1	0	0.00			
BIRC6	57448	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32690146	32690146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	BIRC6	NM_016252	exon26	c.C5270G	p.S1757C	TTGGTTCTGGTCT		657	149	0.23	510	1	0.0019607843		838		44	13	0.30			
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61708414	61708414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_003400	exon24	c.C2975G	p.A992G	ACTTGAGCACTGC		289	32	0.11	295	0	0				618	114	0.18			
C2orf81	388963	mdanderson.org	37	2	74642062	74642062	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001145054	exon4	c.C1161A	p.T387T	GGCCTTGGTCTTC		29	3	0.10	34	0	0				11	0	0.00			
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180810353	180810353	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020943	exon20	c.C2230G	p.Q744E	CTTTTTGTTTCCT		90	11	0.12	92	0	0				239	65	0.27			
ITGA4	3676	mdanderson.org	37	2	182350641	182350641	+	Missense_Mutation	SNP	G	G	T	rs35419274	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000885	exon10	c.G1075T	p.V359F	AACCTCGTTGGAA		89	4	0.04	93	0	0				23	0	0.00			
.	0	bcgsc.ca	37	2	194141679	194141679	+	RNA	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	GGAAAGCACCAGG		59	5	0.08	62	0	0				0	0				
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228884665	228884665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_030623	exon7	c.C905T	p.S302L	TTGGCTGAGGGAT		168	18	0.11	118	0	0				0	0				
MCM8	84515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5935892	5935892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_032485	exon5	c.C481T	p.H161Y	GCAATACATCAGG		109	16	0.15	129	0	0				40	9	0.23			
RRBP1	6238	mdanderson.org	37	20	17596600	17596600	+	Missense_Mutation	SNP	G	G	A	rs372710056		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001042576	exon23	c.C2623T	p.R875W	TCTGCCGCTGTGT		40	3	0.08	26	0	0				280	1	0.00			
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	52198674	52198675	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	AG	AG					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ZNF217	NM_006526	exon1	c.692_693del	p.231_231del	TCAATTAGACTTT		102	10	0.10	88	0	0		227		91	0	0.00			
LAMA5	3911	mdanderson.org	37	20	60890262	60890262	+	Missense_Mutation	SNP	G	G	T	rs201926183	bycluster;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_005560	exon59	c.C7869A	p.D2623E	TGTCTCGTCTGTG		40	3	0.08	46	0	0				121	0	0.00			
APP	351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	27327999	27327999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000484	exon12	c.A1529G	p.K510R	AAATGCTTTAGGG		171	8	0.05	141	0	0				354	27	0.08			
ATP5O	539	ucsc.edu	37	21	35288044	35288044	+	Silent	SNP	C	C	T	rs144779561	bycluster;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ATP5O	NM_001697	exon1	c.G24A	p.G8G	GGAGAGCCCGGAC		41	4	0.10	30	0	0		9		696	1	0.00			
COL6A2	1292	mdanderson.org	37	21	47552285	47552285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001849	exon28	c.C2879T	p.S960L	ACGAGTCGGCGCA		32	3	0.09	30	0	0				298	0	0.00			
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18016810	18016810	+	Missense_Mutation	SNP	A	A	T	rs369723376	alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	CECR2	.	.	.	.	GGAGAAAGCTCAG		102	16	0.16	87	1	0.0114942529		233		51	15	0.29			
.	0	broad.mit.edu	37	22	18842554	18842554	+	RNA	SNP	G	G	A	rs71255469		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	ACAGTGGGACGGG		27	5	0.19	22	0	0				0	0				
MEI1	150365	mdanderson.org	37	22	42128256	42128256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_152513	exon10	c.G1104T	p.E368D	GATCGAGGCAGTG		42	3	0.07	54	0	0				0	0				
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48508121	48508121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_016381	exon1	c.G232A	p.G78S	GCCACTGGCTTGC		128	9	0.07	110	0	0				43	3	0.07			
KLHDC8B	200942	mdanderson.org	37	3	49213207	49213207	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_173546	exon6	c.G1038A	p.E346E	CGTGGAGGCACTG		50	3	0.06	64	0	0				49	0	0.00			
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	57132107	57132107	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_017563	exon12	c.C1624G	p.L542V	CGTATAGGGACCG		171	16	0.09	112	0	0				18	1	0.06			
GPR160	26996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169802035	169802035	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_014373	exon4	c.A275T	p.Y92F	CTAAATACCACAT		165	41	0.25	198	0	0				26	12	0.46			
FNDC3B	64778	broad.mit.edu	37	3	172062023	172062023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	FNDC3B	NM_001135095	exon19	c.G2225T	p.R742L	GCTTCCGGGTGAG		118	3	0.03	111	0	0		118		26	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	rs121913507	bycluster	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		66	6	0.09	49	0	0		1	932	144	37	0.26			
CAMK2D	817	broad.mit.edu;bcgsc.ca	37	4	114378550	114378550	+	Silent	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	CAMK2D	NM_172114	exon18	c.G1416T	p.R472R	TCCATCCCGGCGG		135	10	0.07	155	1	0.0064516129		55		27	4	0.15			
FAM149A	25854	mdanderson.org	37	4	187077206	187077206	+	Nonsense_Mutation	SNP	A	A	T	rs4862653	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_015398	exon7	c.A436T	p.K146X	TGGCGCAAACTCG		85	3	0.04	96	0	0				4	0	0.00			
DNAH5	1767	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	13839638	13839638	+	Splice_Site	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	DNAH5	NM_001369	exon36	c.5710-1G>T	.	ATGACACTGAAAT		79	7	0.09	110	0	0		868		0	0				
FGF10	2255	broad.mit.edu	37	5	44305289	44305289	+	Silent	SNP	T	T	C	rs200817529		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	FGF10,caecum,carcinoma,-2,1	FGF10	NM_004465	exon3	c.A435G	p.E145E	GTTAAATTCTTTC		158	5	0.03	152	0	0		40	1	0	0				
PPT2	0	broad.mit.edu	37	6	32122905	32122905	+	Silent	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	PPT2	NM_138717	exon3	c.G300T	p.V100V	GGCTGTGGTCCCC		127	4	0.03	118	0	0		19		33	0	0.00			
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	39513397	39513397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_145027	exon11	c.G1249A	p.D417N	GCATATCCGCGCC		134	11	0.08	156	0	0				0	0				
APOBEC2	10930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41029397	41029397	+	Silent	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_006789	exon2	c.C462G	p.L154L	TCGACTCTTCATG		150	21	0.14	196	0	0				0	0				
MCM9	254394	ucsc.edu	37	6	119136914	119136914	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	MCM9	NM_017696	exon12	c.A2505T	p.K835N	GTCTGGTTTATCA		20	1	0.05	18	0	0		73		19	7	0.37			
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	122766308	122766308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020755	exon10	c.G1243A	p.E415K	TCATCTCACGAGA		81	9	0.11	77	0	0				117	16	0.14			
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	129609102	129609102	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_000426	exon19	c.C2648G	p.S883C	GCTTGTCTGGCTC		152	12	0.08	141	0	0				3	0	0.00			
KIAA1244	57221	mdanderson.org	37	6	138655582	138655582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_020340	exon33	c.G5599T	p.A1867S	GAAACCGCCCAGG		46	3	0.07	54	0	0				0	0				
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	145148508	145148508	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_007124	exon66	c.G9519A	p.W3173X	TATGTGGCCAGAG		70	9	0.13	71	0	0				32	2	0.06			
ULBP3	79465	bcgsc.ca	37	6	150390212	150390212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	ULBP3	.	.	.	.	AGACCAGGAGCGC		46	4	0.09	40	0	0		22		1	0	0.00			
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	64389258	64389258	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_021148	exon4	c.G1552T	p.E518X	TGTGAAGAATGTG		85	6	0.07	67	0	0				80	9	0.11			
YWHAG	7532	broad.mit.edu	37	7	75959211	75959211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	YWHAG	NM_012479	exon2	c.A427G	p.R143G	TCGCCCTTTTCTC		179	5	0.03	136	0	0		24		621	0	0.00			
TTC26	79989	broad.mit.edu	37	7	138874119	138874119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	TTC26	NM_024926	exon18	c.G1606T	p.V536L	ACCCAAGTAGAAT		522	9	0.02	414	1	0.0024154589		50		18	0	0.00			
EZH2	0	broad.mit.edu	37	7	148512600	148512600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	EZH2	NM_004456	exon13	c.A1544G	p.K515R	TAACCCTTTTTCA		286	4	0.01	211	0	0		823		79	0	0.00			
KRBA1	84626	broad.mit.edu	37	7	149430561	149430561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	KRBA1	.	.	.	.	CTGGGGAGGCGCC		54	9	0.17	47	4	0.085106383		68		17	1	0.06			
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8750110	8750110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004225	exon1	c.G459C	p.Q153H	GCCCAGCTGGGCG		53	9	0.17	51	0	0				10	3	0.30			
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17163456	17163456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_004686	exon11	c.C1162G	p.L388V	CATCTAGATTGCC		88	20	0.23	62	0	0				9	4	0.44			
DUSP4	1846	mdanderson.org	37	8	29194794	29194794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001394	exon4	c.C934A	p.Q312K	GGCGCTGCTTAAC		33	3	0.09	25	0	0				9	0	0.00			
.	6661	bcgsc.ca	37	8	88801690	88801690	+	RNA	SNP	T	T	C	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	CGAGCTTCTTGGA		80	6	0.08	55	0	0				0	0				
MAFA	389692	broad.mit.edu	37	8	144512336	144512338	+	In_Frame_Del	DEL	CGC	CGC	-	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	CGC	CGC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	MAFA	NM_201589	exon1	c.239_241del	p.80_81del	CCCCCGCGCCGCC		6	2	0.33	4	0	0		9		0	0				
TIGD5	84948	bcgsc.ca	37	8	144681321	144681321	+	Silent	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	TIGD5	NM_032862	exon1	c.G1248A	p.P416P	CGCACCGCTGGAG		45	4	0.09	45	0	0		22		25	0	0.00			
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	144940450	144940450	+	Silent	SNP	G	G	C	rs56258403		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_031308	exon1	c.C6972G	p.A2324A	CTGCATGGCCTGG		167	10	0.06	121	0	0				43	3	0.07			
EPPK1	83481	bcgsc.ca;mdanderson.org	37	8	144940462	144940462	+	Silent	SNP	G	G	A	rs56146920	bycluster	TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	EPPK1	NM_031308	exon1	c.C6960T	p.S2320S	GAAGAGGGAGATC		158	14	0.09	116	2	0.0172413793		199		35	1	0.03			
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14819320	14819320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_144966	exon15	c.C2458T	p.P820S	GCAGAGGCAATTC		85	8	0.09	76	0	0				0	0				
HAUS6	54801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19070216	19070216	+	Splice_Site	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_017645	exon13	c.1376+1G>T	.	GTTTTACCTGTTG		251	47	0.19	226	0	0				0	0				
CNTFR	1271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	34552324	34552324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_147164	exon9	c.C953T	p.T318I	GTCGTGGTCTCTG		10	5	0.50	13	0	0				5	2	0.40			
TMEM38B	55151	hgsc.bcm.edu	37	9	108510399	108510399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_018112	exon5	c.G588T	p.Q196H	ATTCCAGCACACC		100	4	0.04	80	0	0				95	0	0.00			
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54265469	54265469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	NM_001002838	exon18	c.G3715A	p.G1239S	CTCCACCGCTTGA		73	18	0.25	46	0	0				19	8	0.42			
.	360021	bcgsc.ca	37	Y	28475241	28475241	+	RNA	SNP	C	C	A	novel		TCGA-WZ-A7V5-01A-11D-A435-10	TCGA-WZ-A7V5-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37a3292a-c941-4ab7-b62d-fdde242a0b26	69293349-62fd-45e6-9658-5177162c214f	.	.	.	.	.	.	TTTTCTCTGCTGT		31	4	0.13	53	0	0				0	0