Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV . 339457 bcgsc.ca;mdanderson.org 37 1 1855319 1855319 + Silent SNP C C T rs2295362 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACGCCCTTGACG 110 11 0.10 123 0 0 0 0 . 339457 bcgsc.ca;mdanderson.org 37 1 1858161 1858161 + Silent SNP C C T rs78807865 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGCCACCGTCGGG 212 17 0.08 257 0 0 0 0 . 284498 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11835556 11835556 + Missense_Mutation SNP C C T rs41275456 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTGACCGCCGGA 183 24 0.13 222 0 0 0 0 . 284498 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11836670 11836670 + Missense_Mutation SNP C C A rs41275458 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGATGCGGCTTT 214 26 0.12 257 0 0 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11838762 11838762 + Silent SNP G G A rs72640211 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCCTGAGATGG 173 11 0.06 257 0 0 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11838841 11838841 + Missense_Mutation SNP A A G rs56001051 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCACTGAGCAGCA 267 20 0.07 321 1 0.0031152648 0 0 . 284498 bcgsc.ca;mdanderson.org 37 1 11839009 11839009 + Silent SNP C C T rs55685198 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCGGACACTCTC 165 13 0.08 215 0 0 0 0 . 284498 bcgsc.ca 37 1 11839034 11839034 + Missense_Mutation SNP G G A rs55967531 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGTGGGCAGCTG 135 8 0.06 192 0 0 0 0 . 0 bcgsc.ca 37 1 12898045 12898045 + RNA SNP G G A rs10158988 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGACCGAAGAAG 63 18 0.29 82 0 0 0 0 . 0 bcgsc.ca 37 1 12898647 12898647 + RNA SNP C C T rs149631941 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTCTCCAGCAGA 72 8 0.11 99 1 0.0101010101 0 0 PRAMEF8 441871 bcgsc.ca;mdanderson.org 37 1 12979729 12979729 + Silent SNP G G A rs1890766 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001012276 exon4 c.G921A p.S307S AGAGTCGGACTTG 298 17 0.06 331 0 0 0 0 PRAMEF8 441871 bcgsc.ca;mdanderson.org 37 1 12979845 12979845 + Missense_Mutation SNP T T C rs1890765 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001012276 exon4 c.T1037C p.V346A AGCAAGTTGTGGC 587 58 0.10 653 0 0 0 0 PRAMEF8 441871 bcgsc.ca;mdanderson.org 37 1 12980150 12980150 + Missense_Mutation SNP A A G rs141480481 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001012276 exon4 c.A1342G p.I448V CCCAAGATCATTG 192 34 0.18 305 0 0 0 0 TMEM51-AS1 200197 hgsc.bcm.edu 37 1 15439098 15439098 + RNA SNP C C T rs114844404 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTCTCCTCCCG 103 20 0.19 104 0 0 1 0 0.00 ESPNP 0 broad.mit.edu 37 1 17030903 17030905 + RNA DEL GAG GAG - rs55663095 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATCGACGAGGAGG 6 3 0.50 8 0 0 0 0 PADI6 353238 broad.mit.edu 37 1 17723476 17723477 + RNA INS - - CA rs61476146 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . PADI6 . . . . ATGCACCCAGGTG 95 7 0.07 108 0 0 51 0 0 KLHDC7A 127707 hgsc.bcm.edu 37 1 18808340 18808340 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_152375 exon1 c.G865T p.V289L GGCAAGGTGTACG 122 6 0.05 139 0 0 0 0 . 0 bcgsc.ca 37 1 21738259 21738259 + RNA SNP C C T rs35836191 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATGACCTTGTTG 35 4 0.11 48 0 0 0 0 HSPG2 3339 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 22202476 22202476 + Silent SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_005529 exon24 c.C3063T p.S1021S GGGTGTGGAGCCC 107 8 0.07 94 0 0 142 10 0.07 CSMD2 114784 bcgsc.ca 37 1 33999430 33999430 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . CSMD2 NM_052896 exon62 c.C9525A p.N3175K GGTCAGGTTTGGG 155 6 0.04 154 0 0 946 0 0 . 343296 bcgsc.ca 37 1 79987731 79987731 + RNA SNP G G A rs140314886 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGGAGGATGGAA 150 11 0.07 149 0 0 0 0 . 0 bcgsc.ca 37 1 100797449 100797449 + RNA SNP A A T rs614766 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGGCCATCACGC 185 7 0.04 258 0 0 0 0 LOC100129138 0 bcgsc.ca 37 1 104615959 104615959 + RNA SNP A A G rs3811506 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACAAGCAGCCATC 124 7 0.06 168 0 0 5 0 0.00 . 100132332 bcgsc.ca 37 1 116107337 116107337 + RNA SNP T T A rs55771787 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTATGGTCACCGA 58 8 0.14 73 0 0 0 0 . 0 bcgsc.ca 37 1 116400426 116400426 + RNA SNP T T C rs7512945 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGAGATTCTGAC 23 4 0.17 40 0 0 0 0 NBPF10 100132406 bcgsc.ca;mdanderson.org 37 1 145365372 145365372 + Missense_Mutation SNP C C G rs61813409 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . NBPF10 NM_001039703 exon80 c.C9997G p.L3333V GGTTGTCTTGAAC 97 11 0.11 108 0 0 221 14 0 0.00 . 0 bcgsc.ca 37 1 146522606 146522606 + RNA SNP T T C rs521687 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGTCTCTAAAAAG 151 23 0.15 178 0 0 14 0 0.00 . 0 bcgsc.ca 37 1 146522686 146522686 + RNA SNP C C T rs522558 bycluster;byfrequency;bysubmitter;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTGGCTCAATA 95 7 0.07 105 0 0 27 0 0.00 . 0 bcgsc.ca 37 1 146522722 146522722 + RNA SNP T T C rs671205 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACAAGTCAACAC 92 7 0.08 100 0 0 5 0 0.00 . 0 bcgsc.ca 37 1 146523665 146523665 + RNA SNP G G A rs61997227 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGAAAGGATGGTC 63 6 0.10 48 0 0 0 0 . 0 bcgsc.ca 37 1 146523670 146523670 + RNA SNP T T C rs594716 byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGATGGTCATCAT 63 6 0.10 47 0 0 0 0 . 0 bcgsc.ca 37 1 146523957 146523957 + RNA SNP T T C rs61734778 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACTGCATAGCACA 82 9 0.11 92 0 0 0 0 . 0 bcgsc.ca 37 1 147313509 147313509 + RNA SNP C C T rs146788179 by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACTGTCCAAGGA 189 9 0.05 188 0 0 0 0 . 0 bcgsc.ca 37 1 148193730 148193730 + RNA SNP G G A rs61811779 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTCGGGAATTCC 372 20 0.05 402 0 0 123 0 0.00 HRNR 388697 bcgsc.ca;mdanderson.org 37 1 152188319 152188319 + Missense_Mutation SNP C C T rs201547528 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . HRNR NM_001009931 exon3 c.G5786A p.G1929D CGGGAGCCAGACC 237 13 0.05 164 1 0.006097561 403 0 0 . 0 bcgsc.ca 37 1 157029197 157029197 + RNA SNP C C G rs62640951 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTAGATCCATTCA 134 5 0.04 168 0 0 33 0 0.00 . 0 bcgsc.ca 37 1 157030280 157030280 + RNA SNP T T C rs1706 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGTGACTTGGCAG 170 8 0.05 171 0 0 1 1 1.00 PRRX1 5396 hgsc.bcm.edu;bcgsc.ca 37 1 170695392 170695392 + Missense_Mutation SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb PRRX1,colon,carcinoma,+1,1 PRRX1 NM_006902 exon3 c.G449A p.R150H AGTTCCGCAGGAA 194 8 0.04 209 2 0.009569378 1 1 34 0 0.00 . 8497 bcgsc.ca 37 1 203015507 203015507 + Silent SNP C C A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTCACCAAGGCA 160 7 0.04 190 0 0 1 0 0.00 . 0 bcgsc.ca 37 1 220490435 220490435 + RNA SNP T T C rs7553951 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTCGCTGGCTCC 44 5 0.11 44 0 0 50 0 0.00 . 100288517 bcgsc.ca 37 1 229178058 229178058 + RNA SNP C C T rs4654640 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATAAAACAACTTC 65 9 0.14 69 1 0.0144927536 2 0 0.00 . 645980 bcgsc.ca 37 1 242156734 242156734 + RNA SNP C C T rs28613024 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTGCCCTCTACG 32 8 0.25 32 0 0 0 0 . 388761 bcgsc.ca 37 1 247886493 247886493 + Missense_Mutation SNP G G A rs62619787 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTACAGGGTTAAA 215 12 0.06 238 0 0 0 0 . 388761 bcgsc.ca;mdanderson.org 37 1 247886615 247886615 + Missense_Mutation SNP G G A rs11809582 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAAACAGTGAGAT 95 11 0.12 136 0 0 0 0 . 148818 bcgsc.ca 37 1 247990905 247990905 + RNA SNP T T C rs6703747 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATGAAGTAAGACA 35 4 0.11 27 0 0 0 0 . 148818 bcgsc.ca 37 1 247991718 247991718 + RNA SNP C C A rs4925725 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATTTTCTCAAAA 75 17 0.23 117 0 0 0 0 OR2T8 343172 bcgsc.ca 37 1 248084825 248084825 + Missense_Mutation SNP C C T rs61857492 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . OR2T8 NM_001005522 exon1 c.C506T p.A169V GCGGTGCACACGA 181 32 0.18 164 2 0.012195122 67 0 0 . 0 bcgsc.ca 37 10 30669367 30669367 + RNA SNP G G A rs2149628 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCAAAGGCTATGC 18 4 0.22 28 0 0 0 0 . 653365 bcgsc.ca;mdanderson.org 37 10 48003992 48003992 + Missense_Mutation SNP C C T rs3739968 bycluster;byfrequency;byhapmap TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCATTACACACTA 982 52 0.05 1587 3 0.0018903592 3 0 0.00 . 399774 bcgsc.ca 37 10 54172174 54172174 + RNA SNP G G A rs7897513 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCGATCGCCACAA 106 7 0.07 163 0 0 0 0 . 729262 bcgsc.ca 37 10 81471458 81471458 + Silent SNP A A C rs201762104 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCAGCTAGTGGAG 218 8 0.04 284 0 0 7 0 0.00 . 0 bcgsc.ca 37 10 81651906 81651906 + RNA SNP A A G rs1972481 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGTCATGTAGA 65 5 0.08 111 0 0 0 0 . 642538 bcgsc.ca 37 10 81791970 81791970 + RNA SNP T T C rs10887394 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTGTATGCAGAA 171 13 0.08 230 0 0 0 0 . 0 bcgsc.ca 37 10 120632048 120632048 + RNA SNP A A G rs9787461 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAACACAAAGATT 40 4 0.10 78 0 0 0 0 MUC2 4583 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1090890 1090890 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_002457 exon28 c.C3785T p.P1262L CACGCCCGTCCAC 130 16 0.12 134 0 0 0 0 . 4586 bcgsc.ca 37 11 1156646 1156646 + Missense_Mutation SNP C C G rs35783651 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000196292,NS,carcinoma,0,2 . . . . . GGTCAGCGAGCTC 187 8 0.04 169 0 0 2 0 0 . 390035 bcgsc.ca 37 11 4496613 4496613 + RNA SNP C C A rs9633905 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGGAACACTAGC 107 6 0.06 111 0 0 0 0 . 340990 bcgsc.ca;mdanderson.org 37 11 17631751 17631751 + Missense_Mutation SNP C C T rs2041028 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACCCCCACAGCC 88 7 0.08 109 0 0 1 0 0.00 . 340990 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 17632651 17632651 + Missense_Mutation SNP C C T rs7111528 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCTCACGCCTGC 88 9 0.10 91 0 0 0 0 DGKZ 8525 broad.mit.edu 37 11 46393272 46393274 + In_Frame_Del DEL AAG AAG - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . DGKZ NM_001105540 exon10 c.1342_1344del p.448_448del GCAAGCAAGAAGA 167 7 0.04 195 0 0 199 48 0 0.00 LOC440040 0 broad.mit.edu;ucsc.edu 37 11 49831483 49831483 + RNA SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGACTCTTGGAA 114 25 0.22 133 0 0 4 1 0.25 . 256190 bcgsc.ca 37 11 51527482 51527482 + RNA SNP C C T rs35049610 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGTAGCACCAAA 57 5 0.09 62 0 0 0 0 . 0 bcgsc.ca 37 11 61936839 61936839 + RNA SNP G G C rs17156910 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGATTGTACGAG 41 4 0.10 40 0 0 0 0 . 120126 bcgsc.ca 37 11 89486848 89486848 + RNA SNP C C G rs11018769 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTGGACAGTTCC 245 11 0.04 234 0 0 0 0 . 79515 bcgsc.ca 37 11 123880482 123880482 + RNA SNP T T G rs11601573 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACCTCCTCATCCT 127 5 0.04 147 0 0 0 0 . 79515 bcgsc.ca 37 11 123880685 123880685 + RNA SNP G G A rs55700020 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCACCGAGTGTT 99 7 0.07 129 0 0 0 0 . 0 bcgsc.ca 37 11 133734907 133734907 + RNA SNP T T G rs10894754 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGCCGTCGTGCC 42 5 0.12 47 0 0 3 0 0.00 WNK1 65125 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 994115 994115 + Missense_Mutation SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001184985 exon19 c.G4925A p.G1642E AAGAGGGGATTGC 264 28 0.11 187 0 0 117 7 0.06 . 0 bcgsc.ca 37 12 6588445 6588445 + RNA SNP A A G rs2008134 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCCCTGATAGGAG 108 8 0.07 60 0 0 0 0 . 0 bcgsc.ca 37 12 8786982 8786982 + RNA SNP T T C rs12308718 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGCGATTGGCAT 106 8 0.08 86 0 0 0 0 GABARAPL1 23710 bcgsc.ca 37 12 10370734 10370734 + Missense_Mutation SNP C C G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . GABARAPL1 NM_031412 exon2 c.C163G p.L55V TCTGACCTTACTG 324 11 0.03 195 0 0 10 211 9 0.04 rescued with RNA-seq HEBP1 50865 bcgsc.ca 37 12 13140216 13140216 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . HEBP1 NM_015987 exon3 c.G268A p.E90K CATCTTCATTGGG 376 13 0.03 150 1 0.0066666667 16 287 13 0.05 rescued with RNA-seq . 390352 bcgsc.ca 37 12 17144587 17144587 + RNA SNP C C T rs61265963 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAAAAACGACCCA 62 5 0.08 32 0 0 6 4 0.67 . 0 bcgsc.ca 37 12 20094524 20094524 + RNA SNP G G T rs1844950 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTAATGTTCTTT 312 10 0.03 208 0 0 0 0 ITPR2 3709 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 26811025 26811025 + Missense_Mutation SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_002223 exon17 c.C1925T p.T642I GCAGTGGTATTAG 403 42 0.10 231 0 0 14 2 0.14 ERGIC2 51290 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 12 29521221 29521221 + Splice_Site SNP C C A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_016570 exon5 c.216-1G>T . AATTTGCTGAAAG 706 54 0.08 422 0 0 12 0 0.00 . 283463 bcgsc.ca 37 12 40826514 40826514 + Silent SNP T T C rs10506162 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTTCCTGTGATG 143 16 0.11 167 2 0.0119760479 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40834918 40834918 + Missense_Mutation SNP C C T rs4768261 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAATTCTAAAGG 153 20 0.13 207 0 0 0 0 . 283463 bcgsc.ca 37 12 40835749 40835749 + Silent SNP T T C rs11176655 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGTCATGTTAGA 189 7 0.04 203 0 0 0 0 . 283463 bcgsc.ca;mdanderson.org 37 12 40837898 40837898 + Missense_Mutation SNP G G A rs11564109 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTCTTTGTGGAAA 99 14 0.14 93 0 0 0 0 . 283463 bcgsc.ca 37 12 40843504 40843504 + Silent SNP A A C rs12581232 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TACAACAGCTACC 683 29 0.04 827 3 0.0036275695 0 0 . 0 bcgsc.ca 37 12 43963769 43963769 + RNA SNP A A G rs75198585 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTCATACTGCTC 39 5 0.13 58 0 0 0 0 . 0 bcgsc.ca 37 12 43964280 43964281 + RNA DNP GT GT TG rs34593988 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGTTGAGTGAATG 73 6 0.08 85 0 0 0 0 . 0 bcgsc.ca 37 12 43965011 43965011 + RNA SNP A A T rs66501365 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCACCAACACAGG 92 10 0.11 111 0 0 0 0 . 0 bcgsc.ca 37 12 43965468 43965468 + RNA SNP G G T rs67397305 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTTCCTGCTCAGA 62 5 0.08 74 0 0 1 0 0.00 . 85349 bcgsc.ca 37 12 52646139 52646139 + RNA SNP G G A rs146544749 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGATCAGGCAGGC 127 11 0.09 130 0 0 2 0 0.00 EIF4B 1975 ucsc.edu;mdanderson.org 37 12 53431298 53431298 + Missense_Mutation SNP T T A rs146008363 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . EIF4B NM_001417 exon11 c.T1412A p.L471Q AGCCCCTAAAGGT 244 24 0.10 279 0 0 38 672 1 0.00 . 653441 bcgsc.ca 37 12 55805647 55805647 + RNA SNP A A G rs12825123 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCTGCAATCTCT 333 20 0.06 405 0 0 394 0 0.00 . 0 bcgsc.ca 37 12 75057687 75057687 + RNA SNP G G A rs7311420 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACAGGAGGAAGGC 45 4 0.09 53 0 0 0 0 . 144535 bcgsc.ca 37 12 97098549 97098549 + Missense_Mutation SNP T T C rs11108643 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAAACTTCTTAC 547 71 0.13 528 4 0.0075757576 0 0 . 0 bcgsc.ca 37 12 106566174 106566174 + RNA SNP A A C rs3853777 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTGACAACAGCG 69 12 0.17 64 0 0 0 0 RNF34 80196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 121855684 121855684 + Silent SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_194271 exon4 c.C606T p.D202D TGGAGACCAAACA 143 30 0.21 151 0 0 124 38 0.31 CDK2AP1 8099 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123746287 123746287 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_004642 exon4 c.C344A p.S115Y AGCTAGGATCTGG 61 8 0.13 77 0 0 466 131 0.28 . 642395 bcgsc.ca 37 13 19801534 19801534 + RNA SNP G G A rs139266746 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCATACGTCCCAG 67 5 0.07 136 0 0 0 0 . 646208 bcgsc.ca 37 13 23490250 23490250 + RNA SNP C C A rs3825451 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTAAAACAACAGC 146 10 0.07 233 4 0.017167382 2 0 0.00 RFC3 5983 bcgsc.ca 37 13 34540232 34540232 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb RFC3_ENST00000434425,NS,carcinoma,0,1 RFC3 NM_181558 exon9 c.G888T p.K296N ATGTAAGGAGGAA 46 4 0.09 63 0 0 40 1 0 0 . 730174 bcgsc.ca 37 13 48337965 48337965 + RNA SNP T T C rs9534813 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAATTATGAACCT 55 5 0.09 119 0 0 0 0 . 100287887 bcgsc.ca 37 13 55015252 55015252 + RNA SNP A A C rs9591591 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCTGGAAGGGCT 142 6 0.04 200 2 0.01 3 0 0.00 . 122199 bcgsc.ca 37 13 65532930 65532930 + RNA SNP A A G rs9598891 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAGGCAGGTGGT 33 5 0.15 75 0 0 0 0 . 100288130 bcgsc.ca 37 13 71498338 71498338 + RNA SNP C C T rs7335663 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CATTGGCGTGGGC 68 8 0.12 105 0 0 0 0 . 100288130 bcgsc.ca 37 13 71498360 71498360 + RNA SNP G G C rs7336024 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGCAGGGAGGAAG 67 7 0.10 106 0 0 0 0 . 100288130 bcgsc.ca 37 13 71498385 71498385 + RNA SNP C C T rs7335686 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGCCAGCGAGGCA 62 7 0.11 95 0 0 0 0 . 100874450 bcgsc.ca 37 13 81847284 81847284 + RNA SNP C C A rs1287528 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGAATTCTGGGAA 27 4 0.15 35 0 0 0 0 . 121727 bcgsc.ca 37 13 90644911 90644911 + RNA SNP G G A rs9588829 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGCCCCGCCTACT 45 6 0.13 100 0 0 0 0 . 100128011 bcgsc.ca 37 13 90823825 90823825 + RNA SNP G G T rs9560569 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAATACGGACAAT 37 6 0.16 59 0 0 0 0 . 100128011 bcgsc.ca 37 13 90823859 90823859 + RNA SNP C C T rs9555981 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTAAACCTTGAAG 36 5 0.14 59 0 0 1 0 0.00 . 100129259 bcgsc.ca 37 13 95411309 95411309 + RNA SNP T T A rs1924075 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTGGATCCTGCT 36 5 0.14 52 0 0 0 0 . 100129259 bcgsc.ca 37 13 95411450 95411450 + RNA SNP A A G rs9516470 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGAGGACCAGCC 25 5 0.20 43 0 0 0 0 CLYBL 171425 mdanderson.org 37 13 100258996 100258996 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_206808 exon1 c.C47T p.A16V CGGCGGCGGCGCT 15 3 0.20 10 0 0 0 0 . 144 bcgsc.ca 37 13 111591265 111591265 + RNA SNP G G A rs2239661 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCAGCGACTCTC 32 5 0.16 66 0 0 0 0 . 0 bcgsc.ca 37 14 21190932 21190932 + RNA SNP C C T rs60729716 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCTGACGTCCAA 65 5 0.08 72 0 0 0 0 . 0 bcgsc.ca 37 14 22070355 22070355 + RNA SNP T T C rs199637760 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCCGATGTCCAC 152 19 0.13 167 1 0.005988024 0 0 . 100288948 bcgsc.ca 37 14 24219529 24219529 + RNA SNP G G A rs35845573 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGACTGGGAATG 53 5 0.09 79 0 0 0 0 FSCB 84075 bcgsc.ca;mdanderson.org 37 14 44975510 44975511 + Missense_Mutation DNP CG CG TA novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CG CG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . FSCB NM_032135 exon1 c.C680T p.P227L AAGTACCGGGGGA 97 7 0.07 123 1 0.0081300813 173 0 0 . 0 bcgsc.ca 37 14 45334034 45334034 + RNA SNP T T C rs115079816 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTCATTTGAAAG 148 7 0.05 208 0 0 0 0 . 319123 bcgsc.ca 37 14 51171922 51171922 + RNA SNP G G A rs72681673 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACACAGGTAACA 32 4 0.13 48 0 0 0 0 . 246720 bcgsc.ca 37 14 81712844 81712844 + RNA SNP C C G rs12891586 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACTCCACTGAGTT 58 4 0.07 90 0 0 0 0 . 317775 bcgsc.ca 37 14 90204548 90204548 + RNA SNP A A G rs10484019 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATCGTGAAAGACT 59 11 0.19 87 0 0 0 0 ATXN3 4287 hgsc.bcm.edu 37 14 92537354 92537355 + In_Frame_Ins INS - - CTGCTGCTGCTGCTGCTGCTG rs76478261 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ATXN3,NS,carcinoma,0,7 ATXN3 NM_004993 exon10 c.916_917insCAGCAGCAGCAGCAGCAGCAG p.G306delinsQQQQQQQG GGTCCCCCTGCTG 50 25 0.50 70 0 0 46 38 0 0.00 . 3494 bcgsc.ca 37 14 106054108 106054108 + RNA SNP G G A rs12105 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGGCCGGTCAGT 139 11 0.08 173 1 0.0057803468 489 0 0.00 . 3501 bcgsc.ca 37 14 106110057 106110057 + RNA SNP G G A rs11160859 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTGCACGACGGTG 154 9 0.06 186 1 0.0053763441 3663 7 0.00 . 3501 bcgsc.ca 37 14 106110060 106110060 + RNA SNP G G A rs7146603 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACGACGGTGAGG 159 9 0.06 185 0 0 3703 2 0.00 . 3493 bcgsc.ca 37 14 106174123 106174123 + RNA SNP G G A rs141644948 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCACCGGATTTT 107 5 0.05 144 0 0 4409 6 0.00 . 28474 bcgsc.ca 37 14 106452817 106452817 + RNA SNP A A G rs1065059 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGATCCATCCCAT 466 21 0.05 685 6 0.0087591241 520 2 0.00 . 28452 bcgsc.ca 37 14 106518565 106518565 + RNA SNP C C T rs113460079 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCCCCTTCCCT 562 29 0.05 808 4 0.004950495 923 0 0.00 . 28452 bcgsc.ca 37 14 106518848 106518848 + RNA SNP T T C rs2073679 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCCAATTCCATG 190 20 0.11 248 2 0.0080645161 587 4 0.01 . 28451 bcgsc.ca 37 14 106552310 106552310 + RNA SNP G G A rs8020204 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGGCCGTGTCCT 143 7 0.05 220 0 0 1000 0 0.00 . 28449 bcgsc.ca 37 14 106586354 106586354 + RNA SNP G G C rs10131161 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATCCAGAGGCTG 66 5 0.08 93 0 0 534 0 0.00 . 28445 bcgsc.ca;mdanderson.org 37 14 106667810 106667810 + RNA SNP C C A rs112170273 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTGCACAGGAGA 86 15 0.17 163 0 0 34 0 0.00 . 28426 bcgsc.ca 37 14 106926311 106926311 + RNA SNP T T G rs4977158 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATAGTATGTGCTA 121 5 0.04 159 0 0 995 1 0.00 . 28388 bcgsc.ca 37 14 107035142 107035142 + RNA SNP G G A rs61732461 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGGGCGAGGATG 79 6 0.08 111 0 0 1700 2 0.00 . 28420 bcgsc.ca 37 14 107048767 107048767 + RNA SNP G G T rs200617568 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGAATCGGCCCTT 129 6 0.05 154 0 0 454 0 0.00 . 28414 bcgsc.ca;mdanderson.org 37 14 107113851 107113851 + RNA SNP C C T rs2072045 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGAGTCTGCATA 87 13 0.15 119 0 0 10 0 0.00 . 28414 bcgsc.ca 37 14 107114193 107114193 + RNA SNP A A G rs2073670 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACTCCATCATGA 159 36 0.23 205 3 0.0146341463 6 0 0.00 . 28461 bcgsc.ca;mdanderson.org 37 14 107170055 107170055 + RNA SNP G G A rs8009570 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTGCTGTACCAA 223 12 0.05 273 0 0 6970 6 0.00 . 28461 bcgsc.ca;mdanderson.org 37 14 107170062 107170062 + RNA SNP A A G rs55891010 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TACCAAAGATAGG 222 13 0.06 275 0 0 6793 21 0.00 . 28461 bcgsc.ca 37 14 107170077 107170077 + RNA SNP C C T rs11845244 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGATCCCTCCCAT 227 12 0.05 293 1 0.0034129693 7113 37 0.01 . 28461 bcgsc.ca;mdanderson.org 37 14 107170207 107170207 + RNA SNP C C T rs11845287 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCAGACTGCACC 168 11 0.07 246 0 0 9139 14 0.00 . 28461 bcgsc.ca 37 14 107170219 107170219 + RNA SNP C C G rs2187989 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCTGCACCTGG 163 20 0.12 255 2 0.0078431373 7831 4 0.00 . 28454 bcgsc.ca 37 14 107179013 107179013 + RNA SNP A A G rs61732216 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCTCACACACA 347 11 0.03 551 0 0 151 0 0.00 . 28409 bcgsc.ca 37 14 107211211 107211211 + RNA SNP G G A rs2073668 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCCCCGGACTCC 88 15 0.17 118 1 0.0084745763 400 0 0.00 . 0 bcgsc.ca 37 15 20450317 20450317 + RNA SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCCTCGTGATGA 189 8 0.04 154 0 0 5 0 0.00 . 0 bcgsc.ca 37 15 20453913 20453913 + RNA SNP C C T rs2601516 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGACACACACCC 208 27 0.13 249 3 0.0120481928 0 0 . 0 bcgsc.ca 37 15 20467151 20467151 + RNA SNP C C T rs4983660 bycluster;by2hit2allele;byhapmap TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGCCGCGTGGGT 109 7 0.06 99 1 0.0101010101 1 0 0.00 . 646379 bcgsc.ca 37 15 22482858 22482858 + RNA SNP A A G rs1807224 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACGGCCATGTCCT 71 6 0.08 72 0 0 1 1 1.00 . 56476 bcgsc.ca 37 15 22691462 22691462 + RNA SNP A A G rs76627098 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCACCATAAGCA 136 8 0.06 157 0 0 0 0 . 56476 bcgsc.ca 37 15 22691729 22691729 + RNA SNP G G C rs71469079 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGCGGGATCGGC 94 7 0.07 119 0 0 2 0 0.00 NUSAP1 51203 bcgsc.ca 37 15 41634587 41634588 + Missense_Mutation DNP AC AC GA novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AC AC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb NUSAP1,NS,carcinoma,+1,2 NUSAP1 NM_018454 exon2 c.C98A p.T33D CAGGCAACCAAGT 104 7 0.07 84 0 0 32 2 208 0 0.00 . 440278 bcgsc.ca 37 15 44020902 44020902 + RNA SNP C C T rs72489216 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGTTACACTGAA 89 6 0.07 111 0 0 0 0 . 0 bcgsc.ca 37 15 57848320 57848320 + RNA SNP G G A rs1690317 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATTAAGTGGTAG 16 4 0.25 22 0 0 0 0 . 0 bcgsc.ca 37 15 62654429 62654429 + RNA SNP C C T rs2089322 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGCTGCGCTTCC 192 11 0.06 223 2 0.0089686099 0 0 . 0 bcgsc.ca 37 15 79019546 79019546 + RNA SNP C C A rs66615064 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTCCCCACCCCA 98 12 0.12 74 0 0 0 0 . 0 bcgsc.ca 37 15 79852090 79852090 + RNA SNP C C A rs1765254 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCGTGCCGGTTTC 93 13 0.14 92 0 0 9 0 0.00 . 0 bcgsc.ca 37 15 79852517 79852517 + RNA SNP T T C rs138410408 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAAGGTGAGGAG 97 9 0.09 158 1 0.0063291139 5 0 0.00 . 0 bcgsc.ca 37 15 85806810 85806810 + RNA SNP G G A rs62021386 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGGCCGGGGAAG 53 11 0.21 64 0 0 0 0 . 0 bcgsc.ca 37 15 89532954 89532954 + RNA SNP A A G rs57920986 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCATTAGACACT 161 7 0.04 169 0 0 12 0 0.00 LRRK1 79705 bcgsc.ca 37 15 101606889 101606890 + Missense_Mutation DNP GC GC AA novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GC GC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . LRRK1 NM_024652 exon33 c.C5814A p.G1938E ATTCTGGCGCCCA 131 6 0.05 152 0 0 310 32 0 0.00 . 729486 bcgsc.ca 37 16 85561 85561 + RNA SNP C C T rs3930589 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTACTCCGGGTCC 44 8 0.18 52 0 0 6 0 0.00 . 647187 bcgsc.ca 37 16 32941279 32941279 + RNA SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAAGGGCATTTG 214 8 0.04 263 0 0 0 0 . 0 bcgsc.ca 37 16 75226838 75226838 + RNA SNP T T A rs1991035 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTGGGTCACAGA 51 5 0.10 69 1 0.0144927536 0 0 . 8389 bcgsc.ca 37 17 3019881 3019881 + RNA SNP C C T rs7214748 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCCCACCTCCAC 106 6 0.06 111 0 0 0 0 XAF1 54739 ucsc.edu;bcgsc.ca 37 17 6663894 6663895 + Missense_Mutation DNP GC GC AG novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GC GC Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb XAF1,colon,carcinoma,+2,1 XAF1 NM_017523 exon4 c.C396G p.R132Q TCTGTCGCAGTGA 286 32 0.11 298 2 0.0067114094 16 1 56 0 0.00 . 100130110 bcgsc.ca 37 17 15672538 15672538 + RNA SNP G G A rs62072425 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAGGCGTGGAGC 61 6 0.10 58 0 0 0 0 . 0 bcgsc.ca 37 17 19658853 19658853 + RNA SNP A A G rs11204415 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGGGCAGCCCGT 48 6 0.13 32 0 0 0 0 . 0 bcgsc.ca 37 17 19659299 19659299 + RNA SNP T T C rs9898251 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTGGTTGGGGGA 27 5 0.19 23 0 0 0 0 . 0 broad.mit.edu 37 17 20459625 20459630 + RNA DEL TGGCTG TGGCTG - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 TGGCTG TGGCTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGGGTTGGCTGT 413 7 0.02 469 0 0 0 0 . 0 bcgsc.ca 37 17 20657648 20657648 + RNA SNP T T C rs8064233 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGACATCTGACC 47 5 0.11 52 0 0 0 0 . 729490 bcgsc.ca 37 17 21544599 21544599 + RNA SNP A A G rs9912297 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACAAGTAAAAGTC 228 10 0.04 257 0 0 0 0 . 23666 ucsc.edu;bcgsc.ca 37 17 21731041 21731041 + Missense_Mutation SNP G G A rs145087783 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCCCCGACCAGC 127 16 0.13 162 0 0 140 0 0.00 . 645668 bcgsc.ca 37 17 25409812 25409812 + RNA SNP G G A rs2061899 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGTGAAGCACTGG 89 5 0.06 107 0 0 0 0 NARR 83871 bcgsc.ca 37 17 27043933 27043933 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001256281 exon2 c.C576A p.D192E GTGCCTGTCCGGT 74 5 0.07 65 0 0 195 0 0.00 . 619519 bcgsc.ca 37 17 27530666 27530666 + RNA SNP C C T rs28419601 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGGCTCTTGCAG 170 13 0.08 203 1 0.0049261084 13 0 0.00 . 0 bcgsc.ca 37 17 30415954 30415954 + RNA SNP A A G rs41290974 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCAATATATCGT 391 24 0.06 409 1 0.0024449878 0 0 LRRC37A11P 342666 bcgsc.ca 37 17 37188445 37188446 + RNA DEL TG TG - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTGACTGAAGTC 62 7 0.11 74 0 0 0 0 TMEM99 147184 bcgsc.ca 37 17 38991052 38991053 + Missense_Mutation DNP TT TT GA novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . TMEM99 NM_001195386 exon3 c.T285A p.L95R AAGGACTTCTTCT 182 13 0.07 187 1 0.0053475936 21 82 0 0.00 . 85354 bcgsc.ca;mdanderson.org 37 17 39258221 39258221 + Missense_Mutation SNP G G A rs141088836 by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCTGGGGTGGCA 69 8 0.12 91 0 0 0 0 LRRC37A 9884 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 44408722 44408722 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_014834 exon9 c.C4079T p.S1360L CTTTTTCATCCTT 106 33 0.31 80 0 0 33 3 0.09 CDC27 996 hgsc.bcm.edu 37 17 45216115 45216115 + Missense_Mutation SNP T T A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CDC27_ENST00000531206,NS,carcinoma,0,2 CDC27_ENST00000531206 NM_001114091 exon13 c.A1712T p.N571I GGCGAATTTTTAT 57 3 0.05 73 1 0.0136986301 0 2 82 0 0.00 . 0 bcgsc.ca 37 17 60361652 60361652 + RNA SNP C C G rs139504127 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTTGGACTAGAAG 327 43 0.13 361 1 0.0027700831 0 0 . 0 bcgsc.ca 37 17 67703437 67703437 + RNA SNP C C T rs140678444 by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCATACGGAATA 76 5 0.07 87 0 0 0 0 . 388478 bcgsc.ca 37 18 57677294 57677294 + RNA SNP A A G rs2000746 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCAGTATCTCAG 62 4 0.06 65 0 0 0 0 . 5273 bcgsc.ca 37 18 61575232 61575232 + Missense_Mutation SNP A A G rs1006961 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTACTACAGGAG 417 16 0.04 522 0 0 0 0 DOT1L 84444 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2222030 2222030 + Silent SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_032482 exon24 c.C2862T p.A954A CCCGGCCTCTCTC 97 12 0.12 86 0 0 45 8 0.18 DENND1C 79958 bcgsc.ca 37 19 6470310 6470310 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . DENND1C NM_024898 exon18 c.G1358A p.R453H ACCGAGCGGTACA 119 7 0.06 155 0 0 93 22 0 0.00 AP1M2 10053 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10694299 10694299 + Missense_Mutation SNP G G C novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_005498 exon3 c.C250G p.L84V TATACAGGAAGGA 124 10 0.08 142 0 0 126 28 0.22 . 0 bcgsc.ca 37 19 22868096 22868096 + Missense_Mutation SNP A A G rs55716469 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000198153,NS,carcinoma,0,1 . . . . . ATTTACAGTTAGG 159 8 0.05 164 0 0 1 0 0 . 0 bcgsc.ca 37 19 22868205 22868205 + Silent SNP T T C rs597906 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000198153,NS,carcinoma,0,1 . . . . . ATGTGATAAATAT 146 11 0.08 173 0 0 1 0 0 . 0 bcgsc.ca 37 19 22868445 22868445 + Silent SNP C C T rs56224405 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000198153,NS,carcinoma,0,1 . . . . . GAAACCCTACAAA 581 15 0.03 673 1 0.0014858841 1 0 0 . 0 bcgsc.ca 37 19 22868541 22868541 + Silent SNP G G A rs71356000 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000198153,NS,carcinoma,0,1 . . . . . ATGTGAGGACTGT 311 12 0.04 353 0 0 1 1 0 0.00 . 0 bcgsc.ca 37 19 22869030 22869030 + Silent SNP G G A rs78524936 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000198153,NS,carcinoma,0,1 . . . . . AGAGAAGCCCTAC 420 26 0.06 531 1 0.0018832392 1 0 0 . 0 bcgsc.ca 37 19 22869372 22869372 + Silent SNP C C T rs35689937 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACCCTACAAGTGT 125 10 0.08 157 0 0 0 0 ZNF91 7644 bcgsc.ca 37 19 23542290 23542291 + Missense_Mutation DNP AG AG GC novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . ZNF91 NM_003430 exon4 c.C3490G p.L1164A CAAAGTAGTGGGA 57 6 0.11 46 0 0 349 20 0 0.00 CAPNS1 826 bcgsc.ca 37 19 36640664 36640669 + In_Frame_Del DEL GCTGGT GCTGGT - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GCTGGT GCTGGT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . CAPNS1 . . . . AAAGGGGCTGGTG 141 5 0.04 132 0 0 19 3 0 0.00 MIA-RAB4B 0 hgsc.bcm.edu 37 19 41285813 41285813 + RNA SNP C C T rs61750952 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGTTTCTCTCCC 68 6 0.09 83 0 0 0 0 TMEM91 641649 bcgsc.ca 37 19 41888851 41888861 + Frame_Shift_Del DEL GGGGACTGGGC GGGGACTGGGC - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GGGGACTGGGC GGGGACTGGGC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . TMEM91 . . . . CTTGGAGGGGACT 82 6 0.07 133 0 0 22 6 0 0.00 PSG3 5671 bcgsc.ca 37 19 43243217 43243218 + Missense_Mutation DNP AA AA GG rs34721205 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AA AA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb PSG3,NS,carcinoma,0,1 PSG3 NM_021016 exon2 c.T88C p.L30P GTAGGCAAGTTCC 139 12 0.09 181 1 0.0055248619 82 1 0 0 . 0 bcgsc.ca 37 19 43883273 43883273 + Missense_Mutation SNP G G C rs113172076 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATCCTGGGTCTAG 48 5 0.10 60 0 0 1 0 0.00 . 147711 bcgsc.ca 37 19 44977071 44977071 + RNA SNP C C T rs1897824 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATTTTGCGTATAG 120 19 0.16 163 1 0.0061349693 0 0 . 147711 bcgsc.ca 37 19 44977240 44977240 + RNA SNP A A G rs1897823 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGTCAGAATTC 67 8 0.12 62 0 0 0 0 . 147711 bcgsc.ca 37 19 44977262 44977262 + RNA SNP T T C rs17714261 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTTCATCTCAGA 71 8 0.11 61 1 0.0163934426 0 0 LMTK3 114783 bcgsc.ca 37 19 49012706 49012706 + Silent SNP G G C novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . LMTK3 NM_001080434 exon5 c.C513G p.G171G AAACCAGCCACTC 197 13 0.07 310 1 0.0032258065 125 0 0 . 0 bcgsc.ca 37 19 50222914 50222914 + RNA SNP G G A rs3810261 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATGTTCGCCACCT 44 9 0.20 38 0 0 2 2 1.00 . 0 bcgsc.ca 37 19 50222955 50222955 + RNA SNP T T C rs1812666 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GATCAGTACGCCA 43 5 0.12 50 0 0 1 1 1.00 MYH14 79784 hgsc.bcm.edu 37 19 50714016 50714016 + Missense_Mutation SNP G G T rs199910006 bycluster;alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001077186 exon2 c.G394T p.G132C TACTCCGGCCTCA 67 4 0.06 75 0 0 15 0 0.00 RFPL4A 342931 bcgsc.ca;mdanderson.org 37 19 56274424 56274424 + Silent SNP C C A rs150161449 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . RFPL4A NM_001145014 exon3 c.C747A p.P249P CGAGCCCTGGCGT 153 13 0.08 234 0 0 8 2 0 0.00 RFPL4A 342931 bcgsc.ca 37 19 56274460 56274460 + Silent SNP A A G rs4801626 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . RFPL4A NM_001145014 exon3 c.A783G p.Q261Q AAGTCAAGATGAT 143 10 0.07 206 3 0.0145631068 8 0 0 ZNF417 147687 bcgsc.ca;mdanderson.org 37 19 58421141 58421141 + Missense_Mutation SNP G G A rs142466487 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . ZNF417 NM_152475 exon3 c.C505T p.P169S CAAATGGCTCCTG 498 22 0.04 598 0 0 44 11 0 0.00 . 728597 bcgsc.ca 37 2 3800383 3800383 + Silent SNP C C T rs357969 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTGGGCGACTCA 272 9 0.03 276 3 0.0108695652 0 0 . 10130 bcgsc.ca;mdanderson.org 37 2 10959407 10959407 + Missense_Mutation SNP A A C rs72779451 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGTGCATTAGCC 116 9 0.08 92 0 0 0 0 . 10130 bcgsc.ca 37 2 10959461 10959461 + Silent SNP G G T rs72779452 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGAGTGGGCAGGA 98 7 0.07 83 0 0 0 0 . 100420972 bcgsc.ca 37 2 17466075 17466075 + RNA SNP A A G rs10208884 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACAGCACCTTGG 65 10 0.15 72 1 0.0138888889 0 0 . 0 bcgsc.ca 37 2 21360583 21360583 + Missense_Mutation SNP A A G rs312966 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGAGTCATGGAAA 122 19 0.16 126 1 0.0079365079 0 0 . 0 bcgsc.ca 37 2 27789861 27789861 + Missense_Mutation SNP T T A rs965813 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTGTGTTCAGGA 220 10 0.05 261 0 0 1 0 0.00 . 0 bcgsc.ca 37 2 43053772 43053772 + RNA SNP C C T rs13013413 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTCTACGTGGAA 86 15 0.17 83 0 0 1 0 0.00 LOC388948 0 bcgsc.ca;mdanderson.org 37 2 47045321 47045321 + Missense_Mutation SNP A A G rs17773492 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAGGGAACTCTT 120 9 0.08 148 0 0 0 0 . 0 bcgsc.ca 37 2 58688907 58688907 + RNA SNP G G A rs2075171 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCTTCGTGCAGC 237 16 0.07 291 1 0.0034364261 66 0 0.00 ZNF638 27332 ucsc.edu;mdanderson.org 37 2 71654529 71654529 + Nonsense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . ZNF638 NM_014497 exon24 c.G5530T p.E1844X ATGATTGAAAGAC 20 4 0.20 14 0 0 179 353 0 0.00 . 0 bcgsc.ca 37 2 81421951 81421951 + RNA SNP A A G rs13430688 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACTCCACCAGCG 53 9 0.17 54 1 0.0185185185 0 0 . 0 bcgsc.ca 37 2 81422135 81422135 + RNA SNP G G T rs6722134 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGTAGGGGTTGGC 72 12 0.17 86 0 0 0 0 . 0 bcgsc.ca 37 2 81427036 81427036 + RNA SNP C C T rs1809229 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTGACGGCCCG 20 4 0.20 25 0 0 0 0 . 0 bcgsc.ca 37 2 81427187 81427187 + RNA SNP C C T rs2010447 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCATGCCTTTGA 14 4 0.29 21 0 0 0 0 LOC1720 0 bcgsc.ca 37 2 83084350 83084350 + RNA SNP A A T rs11126880 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAAACTATTTGTC 57 8 0.14 74 0 0 0 0 . 0 bcgsc.ca 37 2 87365531 87365531 + RNA SNP G G A rs3761695 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCTACGTCTGTT 223 14 0.06 275 0 0 0 0 . 28875 bcgsc.ca;mdanderson.org 37 2 90154131 90154131 + RNA SNP C C T rs77198710 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CATCCACCAGGGC 340 21 0.06 395 0 0 184 7 0.04 . 28875 bcgsc.ca 37 2 90154203 90154203 + RNA SNP G G T rs190666649 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGCAGCCTGCA 517 22 0.04 571 0 0 191 0 0.00 . 28902 bcgsc.ca 37 2 90193417 90193417 + RNA SNP A A G rs1724244 bycluster;byfrequency;bysubmitter TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTAATAATTACCC 342 16 0.05 412 1 0.0024271845 0 0 . 28892 bcgsc.ca 37 2 90229260 90229260 + RNA SNP T T C rs842173 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGATGATCCAGTC 122 7 0.06 147 0 0 0 0 . 28904 bcgsc.ca 37 2 90259965 90259965 + RNA SNP T T C rs842156 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GATGTGTCATCTG 212 19 0.09 282 2 0.0070921986 1 0 0.00 . 0 bcgsc.ca 37 2 91800282 91800282 + RNA SNP A A G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGAAGAACATCG 281 8 0.03 283 0 0 0 0 . 643126 bcgsc.ca 37 2 96241051 96241051 + RNA SNP G G A rs1974909 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTGAGGAACACC 95 7 0.07 150 0 0 0 0 IL1RL1 9173 ucsc.edu;bcgsc.ca 37 2 102968211 102968212 + Missense_Mutation DNP CA CA AG novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CA CA Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . IL1RL1 NM_016232 exon11 c.A1502G p.Q501R TCCCTCCAGCATC 144 18 0.13 184 1 0.0054347826 114 0 0 . 0 bcgsc.ca 37 2 124520286 124520286 + RNA SNP G G C rs12997146 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAACAAGCCATCT 34 5 0.15 37 0 0 0 0 . 100130549 bcgsc.ca 37 2 129276720 129276720 + RNA SNP T T C rs841094 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACAGCCTGGACAG 217 20 0.09 196 0 0 0 0 LOC401010 0 bcgsc.ca 37 2 132201466 132201466 + RNA SNP G G A rs66493058 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGACGGGGCCAA 179 11 0.06 242 0 0 4 0 0.00 LOC401010 0 bcgsc.ca 37 2 132201468 132201468 + RNA SNP G G A rs4522649 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACGGGGCCAAGG 179 13 0.07 247 0 0 4 0 0.00 LOC401010 0 bcgsc.ca 37 2 132201582 132201582 + RNA SNP A A G rs1806886 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCATACGGCAC 101 9 0.09 116 0 0 16 16 1.00 LOC401010 0 bcgsc.ca 37 2 132201736 132201736 + RNA SNP C C G rs2076798 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGAGCCGGCTGC 59 6 0.10 58 0 0 0 0 LOC150776 0 bcgsc.ca 37 2 132257830 132257830 + RNA SNP C C T rs13035779 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTAGACGGTGTC 192 13 0.07 220 0 0 13 0 0.00 LOC150776 0 bcgsc.ca 37 2 132258593 132258593 + RNA SNP A A G rs76033185 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACCACAACAAGGT 145 6 0.04 164 0 0 31 0 0.00 . 0 bcgsc.ca 37 2 139045855 139045855 + RNA SNP C C T rs35998722 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTAAGCGAATAG 118 8 0.07 136 0 0 2 0 0.00 . 0 bcgsc.ca 37 2 139045987 139045987 + RNA SNP C C T rs13033503 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAGTACCATTTCG 138 7 0.05 186 0 0 1 0 0.00 . 401018 bcgsc.ca 37 2 168571044 168571044 + RNA SNP T T C rs7577934 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAAATGTTGTATT 121 14 0.12 122 0 0 0 0 . 401018 bcgsc.ca 37 2 168571488 168571488 + RNA SNP A A T rs34125069 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCAAAGATGCTTG 58 6 0.10 78 0 0 0 0 LRP2 4036 bcgsc.ca;mdanderson.org 37 2 170150695 170150695 + Silent SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . LRP2 NM_004525 exon6 c.C615T p.D205D ATCATTGTCATGG 476 40 0.08 612 1 0.0016339869 751 1 1 1.00 UBR3 130507 hgsc.bcm.edu 37 2 170783231 170783231 + Nonsense_Mutation SNP T T G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_172070 exon15 c.T2181G p.Y727X AGATTATTTTATT 190 10 0.05 205 0 0 15 1 0.07 . 0 bcgsc.ca 37 2 194141586 194141586 + RNA SNP A A T rs55991515 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGGTTATCCACC 137 9 0.07 182 0 0 0 0 . 729399 bcgsc.ca 37 2 200525076 200525076 + RNA SNP A A G rs77443884 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACATCAAGGGCT 52 6 0.12 75 0 0 0 0 . 0 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202974360 202974360 + Missense_Mutation SNP T T G rs12615065 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACGATGTGGCCCC 80 12 0.15 91 0 0 9 0 0.00 . 0 bcgsc.ca 37 2 203003085 203003085 + RNA SNP T T C rs16838883 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTATGGTATATAT 71 7 0.10 100 0 0 0 0 . 645805 bcgsc.ca 37 2 203066419 203066419 + RNA SNP C C T rs10931992 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGAAAGCGGCCGA 60 5 0.08 80 0 0 0 0 . 0 bcgsc.ca 37 2 207275255 207275256 + RNA INS - - CTGGTCTTG rs57664845 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACCACCACCTTG 84 3 0.04 120 0 0 0 0 . 200575 bcgsc.ca 37 2 208977135 208977135 + RNA SNP A A G rs35960349 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACGCGCACCGAGT 63 7 0.11 68 0 0 1 0 0.00 LOC100507443 1419 bcgsc.ca 37 2 209010891 209010891 + Missense_Mutation SNP G G A rs2289917 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACTGCGGGAACG 124 19 0.15 114 0 0 0 0 CCDC108 255101 hgsc.bcm.edu 37 2 219870199 219870199 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CCDC108,NS,carcinoma,+2,1 CCDC108 NM_194302 exon32 c.C5008A p.Q1670K TCTTCTGCTTGGA 120 5 0.04 140 0 0 2 1 0 0 . 266724 bcgsc.ca 37 2 222828022 222828022 + RNA SNP G G T rs76862842 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GACATTGATGCCA 117 8 0.07 127 1 0.0078740157 1 0 0.00 MFF 56947 ucsc.edu;bcgsc.ca 37 2 228194480 228194481 + Missense_Mutation DNP AG AG TT novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AG AG Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . MFF NM_020194 exon3 c.G20T p.S7F ACAAGCAGTGACA 310 37 0.12 327 1 0.003058104 48 17 0 0.00 SLC16A14 151473 hgsc.bcm.edu;bcgsc.ca 37 2 230924017 230924017 + Missense_Mutation SNP C C A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb SLC16A14,NS,carcinoma,0,1 SLC16A14 NM_152527 exon2 c.G52T p.D18Y TTTTGTCTTTGGG 204 10 0.05 256 0 0 0 1 8 0 0.00 SAG 6295 bcgsc.ca;mdanderson.org 37 2 234255547 234255548 + Missense_Mutation DNP GT GT AC novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . SAG NM_000541 exon16 c.T1208C p.V403T AATGACGTTGATG 86 7 0.08 109 0 0 77 3 0 0.00 . 339766 bcgsc.ca 37 2 234708428 234708428 + Silent SNP G G A rs13013882 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGGTGAGGATG 110 17 0.15 109 1 0.0091743119 0 0 . 339766 bcgsc.ca;mdanderson.org 37 2 234710831 234710831 + Silent SNP G G C rs10929306 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGGCTGCTGTGC 88 14 0.16 95 0 0 0 0 . 339766 bcgsc.ca 37 2 234716426 234716426 + Silent SNP G G A rs11563241 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAAAACGGTGCTG 122 7 0.06 209 2 0.009569378 0 0 . 339766 bcgsc.ca 37 2 234727333 234727333 + Missense_Mutation SNP C C G rs719418 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCAAGCAGAAGG 163 8 0.05 170 0 0 0 0 . 0 bcgsc.ca 37 2 241865211 241865211 + Missense_Mutation SNP G G A rs56199645 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATGACGCGCTGG 181 12 0.07 218 0 0 0 0 . 643503 bcgsc.ca 37 20 6182755 6182755 + RNA SNP C C T rs3747924 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTGGACAGCAGC 20 4 0.20 30 0 0 0 0 . 0 broad.mit.edu 37 20 10869748 10869748 + RNA DEL T T - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTTATTTTTTT 6 2 0.33 8 0 0 0 0 . 388795 bcgsc.ca 37 20 31481077 31481077 + Missense_Mutation SNP C C T rs73904069 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACCCCCGTATCC 191 7 0.04 154 0 0 0 0 . 391269 bcgsc.ca 37 21 15436681 15436681 + RNA SNP G G C rs11908695 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGCCAGATGGTC 249 25 0.10 256 1 0.00390625 4 0 0.00 . 653214 bcgsc.ca 37 21 20230102 20230102 + RNA SNP C C T rs2825212 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CATGGTCAACCCC 271 15 0.06 265 3 0.0113207547 5048 6 0.00 . 54019 bcgsc.ca 37 21 20617291 20617291 + RNA SNP G G T rs9980261 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTACAGACTACC 46 8 0.17 48 0 0 0 0 . 391276 bcgsc.ca 37 21 30274198 30274198 + RNA SNP G G A rs2248250 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTAGACGTTCTTT 32 5 0.16 36 0 0 0 0 . 391276 bcgsc.ca 37 21 30274205 30274205 + RNA SNP T T C rs2738935 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCTTTTCCGCCC 28 4 0.14 33 0 0 0 0 . 391276 bcgsc.ca 37 21 30275638 30275638 + RNA SNP C C T rs2248470 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGAAGGCGACGTT 77 5 0.06 65 0 0 1 0 0.00 . 391276 bcgsc.ca 37 21 30275705 30275705 + RNA SNP G G A rs2705643 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCAATGTCACCA 77 9 0.12 56 1 0.0178571429 0 0 TIAM1 7074 bcgsc.ca 37 21 32638549 32638550 + Missense_Mutation DNP CC CC AT novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . TIAM1 NM_003253 exon5 c.G739A p.G247M GGCCCCCCGTTTG 234 13 0.06 202 0 0 522 19 0 0.00 PAXBP1 94104 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 34123334 34123336 + In_Frame_Del DEL ACG ACG - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 ACG ACG Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_013329 exon10 c.1616_1618del p.539_540del TTGTCTACGACGA 172 26 0.15 158 0 0 87 0 0.00 KRTAP12-2 353323 bcgsc.ca 37 21 46086718 46086719 + Missense_Mutation DNP GA GA CG novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 GA GA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . KRTAP12-2 NM_181684 exon1 c.T85C p.S29R TGGCAGGAGCTGG 94 10 0.11 77 1 0.012987013 10 0 0 . 644768 bcgsc.ca 37 22 16940793 16940793 + RNA SNP C C T rs150627359 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCTTGCGACACC 153 12 0.08 144 0 0 0 0 RIMBP3 85376 bcgsc.ca;mdanderson.org 37 22 20457841 20457841 + Missense_Mutation SNP T T C rs202034782 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . RIMBP3 NM_015672 exon1 c.A3461G p.Q1154R GGCACCTGTAGCT 972 31 0.03 1100 0 0 42 3 0 0.00 LOC400891 0 ucsc.edu;bcgsc.ca;mdanderson.org 37 22 21407656 21407656 + Missense_Mutation SNP T T C rs59837066 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAAACATCTTCCT 138 15 0.11 137 0 0 0 0 . 0 broad.mit.edu 37 22 22516884 22516884 + RNA DEL C C - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGCATCAGCAGC 196 14 0.07 263 0 0 56 0 0.00 . 28785 bcgsc.ca 37 22 22516998 22516998 + RNA SNP C C T rs2073453 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTGACCGCTACC 121 8 0.07 140 0 0 62 0 0.00 . 28770 bcgsc.ca 37 22 22556368 22556368 + RNA SNP C C T rs9306341 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGAAGCCAGGGAG 98 7 0.07 76 0 0 0 0 . 23751 bcgsc.ca 37 22 22577869 22577869 + RNA SNP A A G rs743515 bycluster;byfrequency;by2hit2allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGGCGGACACCCG 289 21 0.07 341 0 0 0 0 . 28802 bcgsc.ca;mdanderson.org 37 22 23114327 23114327 + RNA SNP T T C rs6003299 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCCATGGCCTG 102 17 0.17 133 0 0 2 0 0.00 . 28802 bcgsc.ca;mdanderson.org 37 22 23114350 23114350 + RNA SNP A A G rs5996382 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCCTCAGCCTCC 110 23 0.21 150 1 0.0066666667 1 0 0.00 . 28802 bcgsc.ca;mdanderson.org 37 22 23114993 23114993 + RNA SNP G G A rs2073451 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACACCGCCACCC 93 14 0.15 98 0 0 4 0 0.00 GAS2L1 10634 bcgsc.ca;mdanderson.org 37 22 29707888 29707888 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . GAS2L1 . . . . CAGCACCCCGGCT 17 5 0.29 18 0 0 54 65 6 0.09 LIMK2 3985 ucsc.edu 37 22 31655980 31655980 + Silent SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb LIMK2,colon,carcinoma,0,1 LIMK2 NM_005569 exon5 c.G468A p.P156P CATGCCGGCCACC 43 4 0.09 52 1 0.0192307692 101 1 53 0 0.00 . 0 bcgsc.ca 37 22 44761797 44761797 + Missense_Mutation SNP T T A rs5765809 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATGTGCTTAGACA 141 8 0.06 138 0 0 0 0 . 0 bcgsc.ca 37 22 51193572 51193572 + RNA SNP A A G rs138661035 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTATTATTGGTG 137 16 0.12 143 0 0 3 0 0.00 . 0 bcgsc.ca 37 22 51193629 51193629 + RNA SNP A A G rs142680588 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACCTATACGGCAT 232 24 0.10 253 0 0 9 0 0.00 . 0 bcgsc.ca 37 3 11915154 11915154 + RNA SNP A A G rs3732701 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCAGCAAATACG 69 10 0.14 83 0 0 0 0 . 152110 bcgsc.ca;mdanderson.org 37 3 27204052 27204052 + Silent SNP G G A rs17854381 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb NEK10_ENST00000429845,NS,carcinoma,0,1 . . . . . GAGCATGTGGGGT 127 10 0.08 145 1 0.0068965517 1 0 0 . 152110 bcgsc.ca 37 3 27216197 27216197 + Missense_Mutation SNP C C T rs55780680 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb NEK10,NS,carcinoma,0,2 . . . . . CAGGCCCTGTCTT 235 8 0.03 268 0 0 2 0 0 . 152110 bcgsc.ca 37 3 27243045 27243045 + Silent SNP G G C rs17680166 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTCTGGGACTGGT 169 6 0.04 184 0 0 0 0 . 391524 bcgsc.ca 37 3 31494587 31494587 + RNA SNP G G A rs17027714 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTGGGCGCAACAG 57 7 0.12 57 0 0 0 0 . 391524 bcgsc.ca 37 3 31494993 31494993 + RNA SNP C C T rs9824199 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACCTACGGCACT 51 6 0.12 68 0 0 0 0 . 391524 bcgsc.ca 37 3 31496145 31496145 + RNA SNP T T C rs9849739 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCATTTTCCAGCA 138 6 0.04 185 0 0 0 0 . 391526 bcgsc.ca 37 3 32662531 32662531 + RNA SNP T T C rs6550143 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGAATTTCTCTGG 60 7 0.12 108 0 0 0 0 . 391526 bcgsc.ca 37 3 32662803 32662803 + RNA SNP C C A rs59067676 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAATCCCCCTTTG 132 15 0.11 176 1 0.0056818182 0 0 . 391526 bcgsc.ca 37 3 32662807 32662807 + RNA SNP T T C rs58963522 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCCCTTTGAAGG 139 15 0.11 186 1 0.0053763441 0 0 . 391526 bcgsc.ca 37 3 32662919 32662919 + RNA SNP C C T rs34045705 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGTATCTCTCTA 169 20 0.12 182 1 0.0054945055 0 0 . 391526 bcgsc.ca 37 3 32662938 32662938 + RNA SNP T T C rs35370637 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTGCCTTTGAGA 168 12 0.07 164 0 0 0 0 . 391526 bcgsc.ca 37 3 32662960 32662960 + RNA SNP A A G rs35066348 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACGAGACTAGGA 161 23 0.14 162 0 0 1 0 0.00 . 0 bcgsc.ca 37 3 39255730 39255730 + RNA SNP G G A rs7643880 bycluster;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTTTGTGACAT 28 5 0.18 29 0 0 0 0 . 0 bcgsc.ca 37 3 39686013 39686013 + RNA SNP A A T rs78908069 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAATCTACAAAGG 117 9 0.08 90 0 0 0 0 . 391530 bcgsc.ca 37 3 42363697 42363697 + RNA SNP C C T rs139639533 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCTCTTCGCATTC 28 5 0.18 28 0 0 0 0 . 9430 bcgsc.ca 37 3 75377715 75377715 + RNA SNP C C T rs4677496 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGAGGACGATGAA 60 5 0.08 56 0 0 0 0 . 0 bcgsc.ca 37 3 103782249 103782249 + RNA SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAAGAGTTGTAG 31 4 0.13 38 0 0 0 0 . 339881 bcgsc.ca 37 3 122380888 122380888 + RNA SNP C C T rs790117 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCCACCAAAGGA 89 8 0.09 77 0 0 0 0 . 339881 bcgsc.ca 37 3 122380923 122380923 + RNA SNP G G C rs790116 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTAACGCTCCTG 89 10 0.11 80 0 0 0 0 LOC653712 0 bcgsc.ca 37 3 128580585 128580585 + RNA SNP C C A rs789247 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTCCACGGCAGA 158 8 0.05 151 0 0 7 0 0.00 . 0 bcgsc.ca 37 3 132105901 132105901 + RNA SNP A A G rs2124506 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGCTCAGAATTT 102 8 0.08 108 0 0 0 0 . 0 bcgsc.ca 37 3 166579857 166579857 + RNA SNP C C T rs9832877 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTGTACTTTTGT 131 16 0.12 131 2 0.0152671756 0 0 . 280644 bcgsc.ca 37 3 186479009 186479009 + RNA SNP A A G rs866601 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACAGCAGAACTG 139 9 0.06 103 0 0 1 0 0.00 . 0 bcgsc.ca 37 4 3938121 3938121 + RNA SNP C C T rs7676401 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAGCCCTGCTGG 63 5 0.08 90 0 0 4 0 0.00 . 728564 bcgsc.ca 37 4 8176480 8176480 + RNA SNP G G A rs11547949 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GATGCCGGTGATT 94 6 0.06 138 0 0 114 0 0.00 . 0 bcgsc.ca 37 4 9486098 9486098 + RNA SNP C C G rs114281488 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGATTTCATCTTC 170 6 0.04 236 0 0 0 0 . 0 bcgsc.ca 37 4 9711554 9711554 + RNA SNP G G A rs111695399 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCGACCGCTCCGT 126 6 0.05 159 1 0.0062893082 0 0 . 645641 bcgsc.ca 37 4 28825584 28825584 + RNA SNP G G A rs12644777 bycluster;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAATCGTAGCTG 31 5 0.16 46 0 0 6 0 0.00 . 0 bcgsc.ca 37 4 33012957 33012957 + RNA SNP A A G rs6531315 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACTGCAATTTCTT 47 4 0.09 63 0 0 0 0 . 0 bcgsc.ca 37 4 49244932 49244932 + RNA SNP C C T rs201474862 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCATTGCTATTTT 15 5 0.33 19 0 0 0 0 . 0 bcgsc.ca 37 4 57627451 57627451 + RNA SNP G G A rs2016218 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCTTTGGAAAGC 103 10 0.10 172 2 0.011627907 0 0 . 644548 bcgsc.ca 37 4 63683674 63683674 + RNA SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAAGATGTCATAG 65 21 0.32 138 0 0 1 0 0.00 . 0 bcgsc.ca 37 4 70212704 70212704 + RNA SNP G G A rs6851810 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTTTGAGAGCATT 57 7 0.12 98 0 0 0 0 . 345258 bcgsc.ca 37 4 83196536 83196536 + RNA SNP G G A rs13119500 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGCCAAGAAAGAT 24 5 0.21 29 0 0 1 0 0.00 . 391672 bcgsc.ca 37 4 83323062 83323062 + RNA SNP T T C rs7695741 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAGAAGTTGATGC 81 8 0.10 115 0 0 0 0 SEC31A 22872 ucsc.edu 37 4 83778879 83778879 + Silent SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . SEC31A NM_001077206 exon15 c.C1665A p.P555P AGATGAGGGTAGA 43 4 0.09 53 0 0 227 181 0 0.00 . 391686 bcgsc.ca 37 4 111866561 111866561 + RNA SNP C C T rs28696178 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGCTACGTGGTA 36 4 0.11 62 0 0 0 0 . 729249 bcgsc.ca 37 4 120275268 120275268 + RNA SNP A A G rs62320725 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAGGTGAGATGAG 213 17 0.08 284 0 0 0 0 . 0 bcgsc.ca 37 4 120314664 120314664 + RNA SNP T T C rs13127114 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCCATTGTGACG 104 11 0.11 171 0 0 0 0 . 0 bcgsc.ca 37 4 120314741 120314741 + RNA SNP C C A rs13151285 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCACCCAATGC 98 8 0.08 184 0 0 0 0 . 0 bcgsc.ca 37 4 120314881 120314881 + RNA SNP A A G rs4309825 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAATTCATGGCAT 240 16 0.07 343 0 0 0 0 . 0 bcgsc.ca 37 4 120314921 120314921 + RNA SNP C C T rs4604043 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCTTCTAATGC 258 18 0.07 359 0 0 1 0 0.00 . 0 bcgsc.ca 37 4 120315906 120315906 + RNA SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTTTTCGCTATA 176 10 0.06 204 0 0 1 0 0.00 . 0 bcgsc.ca 37 4 120316075 120316075 + RNA SNP A A G rs11098513 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCCCCCACCAATG 135 10 0.07 150 2 0.0133333333 0 0 . 344988 bcgsc.ca 37 4 121263497 121263497 + RNA SNP G G A rs1160185 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATGGGGTTATCT 16 5 0.31 22 0 0 0 0 . 100128266 bcgsc.ca 37 4 174555444 174555444 + RNA SNP C C T rs60395447 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTTTCACGAAGGT 28 5 0.18 64 0 0 0 0 . 0 bcgsc.ca 37 4 189660460 189660460 + RNA SNP G G C rs60608362 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGTAAAGGAAGAT 120 7 0.06 205 0 0 30 0 0.00 . 3323 bcgsc.ca 37 4 190395259 190395259 + RNA SNP C C G rs13143685 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGGAGCTAATCC 54 7 0.13 94 0 0 0 0 . 653082 bcgsc.ca 37 5 766939 766939 + Silent SNP G G A rs4957103 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ZDHHC11B,NS,carcinoma,0,1 . . . . . CCAGCCGTTCACT 61 5 0.08 76 0 0 1 0 0 ZDHHC11 79844 bcgsc.ca 37 5 843766 843766 + Missense_Mutation SNP C C T rs76685897 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . ZDHHC11 NM_024786 exon4 c.G577A p.V193I ACTGGACGAGGAC 341 15 0.04 511 0 0 97 7 0 0.00 . 391739 bcgsc.ca 37 5 14639939 14639939 + RNA SNP C C T rs144306780 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGACAGCCCTCAA 31 4 0.13 58 0 0 0 0 . 4479 bcgsc.ca 37 5 25909764 25909764 + RNA SNP C C T rs11739167 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAGGACACCAAA 64 9 0.14 116 0 0 32 0 0.00 . 4479 bcgsc.ca 37 5 25910566 25910566 + RNA SNP A A G rs12655221 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGAAGCAGATGGA 102 26 0.25 191 0 0 23 0 0.00 . 4479 bcgsc.ca 37 5 25911136 25911136 + RNA SNP C C A rs9293194 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATGTACCACTGA 163 26 0.16 237 1 0.0042194093 8 0 0.00 . 0 bcgsc.ca 37 5 32523748 32523748 + RNA SNP T T C rs591985 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTCAATTTCATCT 162 8 0.05 222 1 0.0045045045 0 0 . 285634 bcgsc.ca 37 5 39719446 39719446 + RNA SNP A A G rs10512714 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCACCAACAGTG 53 8 0.15 72 0 0 0 0 . 0 bcgsc.ca 37 5 41586211 41586211 + RNA SNP T T G rs634858 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTACTTTCTGG 16 4 0.25 24 0 0 0 0 . 0 bcgsc.ca 37 5 41587666 41587666 + RNA SNP C C T rs661845 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAACTTCAGCTGC 57 8 0.14 75 0 0 0 0 . 0 bcgsc.ca 37 5 41587802 41587802 + RNA SNP T T C rs79920342 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGCAATTGAAGC 33 4 0.12 48 0 0 0 0 FBXO4 26272 hgsc.bcm.edu;bcgsc.ca 37 5 41927269 41927269 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_033484 exon2 c.G344T p.W115L TTGACTGGAAGTC 120 6 0.05 191 0 0 28 0 0.00 GLRX 2745 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 95152294 95152294 + Missense_Mutation SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb GLRX,NS,carcinoma,0,1 GLRX NM_001243659 exon2 c.G244A p.G82R TGCATCCGCCTAT 83 10 0.12 123 0 0 0 1 100 7 0.07 PCDHB4 56131 ucsc.edu;bcgsc.ca 37 5 140502343 140502344 + Missense_Mutation DNP CC CC TT novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CC CC Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . PCDHB4 NM_018938 exon1 c.C764T p.P255F AACAGCCCCCTAG 102 15 0.15 187 0 0 177 1 0 0.00 . 0 bcgsc.ca 37 6 1514247 1514247 + RNA SNP G G A rs12211247 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAATGGAGCTCC 16 4 0.25 18 0 0 0 0 . 0 bcgsc.ca 37 6 1514652 1514652 + RNA SNP C C T rs3902814 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACACCCTTCTCT 31 4 0.13 51 0 0 0 0 . 9425 bcgsc.ca;mdanderson.org 37 6 4716016 4716016 + Missense_Mutation SNP A A G rs3812179 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CDYL,NS,carcinoma,0,2 . . . . . TTTATGACATTTC 229 14 0.06 262 1 0.0038167939 2 0 0 . 9425 bcgsc.ca 37 6 4716037 4716037 + Missense_Mutation SNP T T C rs3812178 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CDYL,NS,carcinoma,0,2 . . . . . CACAGGTCAGCCT 243 13 0.05 268 2 0.0074626866 2 0 0 . 9425 bcgsc.ca 37 6 4735035 4735035 + Missense_Mutation SNP T T C rs13196069 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CDYL,NS,carcinoma,0,1 . . . . . TCTCCGTGAGCAG 75 5 0.07 89 1 0.0112359551 1 0 0 . 9425 bcgsc.ca 37 6 4735071 4735071 + Missense_Mutation SNP C C G rs28360500 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb CDYL,NS,carcinoma,0,1 . . . . . CTCCCGCTTTACA 75 5 0.07 91 1 0.010989011 1 0 0 . 0 bcgsc.ca 37 6 23972696 23972696 + RNA SNP G G T rs34725714 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATGTTAGTTTCTT 72 5 0.07 109 0 0 0 0 HIST1H2AB 8335 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 26033614 26033614 + Silent SNP G G A rs199590202 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_003513 exon1 c.C183T p.A61A GATCTCGGCGGTC 102 17 0.17 140 0 0 0.001 1 1 1.00 HIST1H4F 8361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26240904 26240904 + Missense_Mutation SNP C C G rs374666858 alternate_allele TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_003540 exon1 c.C251G p.A84G TCACTGCAATGGA 98 22 0.22 132 0 0 0 0 ZNF322 79692 bcgsc.ca;mdanderson.org 37 6 26637724 26637724 + Missense_Mutation SNP T T C rs71557344 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001242797 exon5 c.A1058G p.Y353C ACAGTGTATTTAT 633 24 0.04 748 2 0.0026737968 37 0 0.00 ZKSCAN3 80317 ucsc.edu;bcgsc.ca 37 6 28331127 28331128 + Missense_Mutation DNP AA AA GC novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AA AA Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ZKSCAN3,NS,other,-1,1 ZKSCAN3 NM_024493 exon4 c.A599C p.K200A GAAGATAAAGTGG 79 7 0.09 101 1 0.0099009901 50 1 9 0 0.00 . 729583 bcgsc.ca;mdanderson.org 37 6 28911802 28911802 + Missense_Mutation SNP G G A rs2071790 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCAGGGAGTAAG 98 17 0.17 119 0 0 0 0 . 352963 bcgsc.ca 37 6 29769497 29769497 + RNA SNP A A C rs1610711 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTTCTAGTTGCT 27 6 0.22 21 0 0 0 0 HLA-G 3135 ucsc.edu 37 6 29797394 29797394 + Silent SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . HLA-G NM_002127 exon5 c.G819A p.V273V GGTGGTGCCTTCT 132 1 0.01 137 0 0 90 866 344 0.40 TRIM39 56658 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 30309904 30309904 + Silent SNP A A G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_021253 exon9 c.A1425G p.T475T TGTCACAGACCGC 86 7 0.08 130 0 0 42 0 0.00 . 116935 bcgsc.ca 37 6 31248785 31248785 + RNA SNP G G A rs2524061 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCAGTCGTTGGCA 57 5 0.09 48 0 0 9 0 0.00 . 3132 bcgsc.ca 37 6 32441276 32441276 + RNA SNP C C T rs12215313 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGCCTCCAGGGA 129 6 0.05 129 0 0 277 0 0.00 HLA-DRB6 0 broad.mit.edu 37 6 32521925 32521926 + RNA INS - - T rs140249246 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACACTGAACAGT 10 3 0.30 14 0 0 0 0 . 0 bcgsc.ca 37 6 51275042 51275042 + RNA SNP T T C rs62458490 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ENSG00000180518,NS,carcinoma,0,1 . . . . . ACTTGCTTGAGGT 355 12 0.03 436 1 0.002293578 1 162 0 0.00 . 1204 bcgsc.ca 37 6 54350048 54350048 + RNA SNP G G A rs807991 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TATTGAGTCTTCT 115 6 0.05 124 0 0 0 0 . 642443 bcgsc.ca 37 6 66546941 66546941 + RNA SNP A A G rs61732140 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGGACATATATT 269 12 0.04 313 1 0.0031948882 8 0 0.00 . 642443 bcgsc.ca 37 6 66547178 66547178 + RNA SNP G G A rs4392709 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGTCGTCTCAA 154 14 0.09 237 1 0.0042194093 0 0 . 642443 bcgsc.ca 37 6 66547322 66547322 + RNA SNP T T G rs9363455 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGCCCTTGATAA 107 12 0.11 156 0 0 0 0 . 0 bcgsc.ca 37 6 73308220 73308220 + RNA SNP G G C rs79957120 byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTTTGGTACTGA 106 5 0.05 148 0 0 0 0 PHIP 55023 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 79725372 79725372 + Missense_Mutation SNP G G C novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_017934 exon14 c.C1364G p.T455S TGACCAGTGTAAG 118 10 0.08 130 0 0 7 0 0.00 . 0 bcgsc.ca 37 6 85996401 85996401 + RNA SNP C C T rs313229 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCAAGCAGTGTG 252 15 0.06 278 1 0.0035971223 5 0 0.00 . 442237 bcgsc.ca 37 6 97096688 97096688 + RNA SNP T T C rs11759390 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCCACTGAACTT 132 15 0.11 182 0 0 0 0 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 131923359 131923359 + Silent SNP T T G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_015979 exon18 c.A2112C p.T704T CGTACCTGTTACA 100 26 0.26 130 0 0 23 10 0.43 . 391040 bcgsc.ca 37 6 137865140 137865140 + RNA SNP A A G rs9484059 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCCAAGACTTGCC 74 6 0.08 120 0 0 1 0 0.00 . 391040 bcgsc.ca 37 6 137865147 137865147 + RNA SNP A A G rs9494809 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTGCCATGGGAA 71 6 0.08 126 0 0 0 0 . 153932 bcgsc.ca 37 6 158658759 158658759 + RNA SNP C C G rs113731832 byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTATCTCTAGTAA 37 4 0.11 57 0 0 3 0 0.00 . 153932 bcgsc.ca 37 6 158658857 158658857 + RNA SNP A A C rs112542076 byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGCAAATGTTTA 50 7 0.14 51 0 0 1 0 0.00 TCP1 6950 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160205000 160205000 + Missense_Mutation SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_030752 exon7 c.C770T p.P257L TTTTCAGGGTCTG 127 20 0.16 168 0 0 618 105 0.17 . 0 bcgsc.ca 37 6 167622347 167622347 + RNA SNP A A C rs9459922 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAGGCAGCTTCC 85 8 0.09 113 0 0 13 0 0.00 . 100421638 bcgsc.ca 37 6 168688281 168688281 + RNA SNP T T G rs9456019 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTCTTTCCTTGG 127 17 0.13 159 1 0.0062893082 0 0 LOC389458 57786 bcgsc.ca 37 7 5112853 5112853 + RNA SNP G G C rs73316654 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TAGCTAGAGGTGC 143 6 0.04 168 0 0 0 0 . 0 bcgsc.ca 37 7 9767725 9767725 + RNA SNP G G T rs72583761 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGTTCCGGCTGAC 157 12 0.08 175 0 0 13 0 0.00 . 0 bcgsc.ca 37 7 9767811 9767811 + RNA SNP T T G rs112406696 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTTTTTGGTGGG 156 14 0.09 162 0 0 8 0 0.00 . 0 bcgsc.ca 37 7 12511173 12511173 + RNA SNP C C T rs12699379 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTTAACGTAATT 27 4 0.15 46 0 0 0 0 . 0 bcgsc.ca 37 7 12511312 12511312 + RNA SNP G G A rs11275 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGATCTGTTTATA 71 5 0.07 87 0 0 3 0 0.00 . 0 bcgsc.ca 37 7 12511924 12511924 + RNA SNP T T G rs847956 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCACTTAAAAAA 51 7 0.14 58 0 0 0 0 . 0 bcgsc.ca 37 7 23603318 23603318 + RNA SNP A A G rs227944 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTCCAAAATAGAT 325 13 0.04 369 0 0 0 0 LOC646762 0 bcgsc.ca 37 7 29700039 29700039 + RNA SNP C C T rs1728603 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTAAAACGCTTCC 156 20 0.13 174 0 0 0 0 . 0 broad.mit.edu 37 7 38284884 38284885 + RNA INS - - GG rs200076851 by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGTCAAGGTGTG 7 5 0.71 4 0 0 0 0 . 0 bcgsc.ca 37 7 39874281 39874281 + RNA SNP T T C rs113205984 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCAGAATGACAAT 163 14 0.09 204 0 0 35 35 1.00 . 0 bcgsc.ca 37 7 48886607 48886607 + RNA SNP A A G rs28657654 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGATCATGGTGA 194 17 0.09 230 1 0.0043478261 2 0 0.00 . 2667 bcgsc.ca 37 7 48943352 48943352 + RNA SNP T T C rs887451 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTGTTATAGAGGC 23 5 0.22 25 0 0 0 0 . 0 bcgsc.ca 37 7 51668140 51668140 + RNA SNP G G A rs4538818 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAATTCGAACTTT 132 7 0.05 158 0 0 0 0 . 0 bcgsc.ca 37 7 51668190 51668190 + RNA SNP G G A rs4541850 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGGGAGGCTGGC 159 7 0.04 185 0 0 0 0 . 653175 bcgsc.ca 37 7 53256324 53256324 + RNA SNP T T C rs35856447 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAAAGATGGGAAC 215 22 0.10 238 2 0.0084033613 11 0 0.00 . 222005 bcgsc.ca 37 7 54487594 54487594 + RNA SNP C C T rs35588876 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAATTCCGAGGCC 35 4 0.11 48 0 0 2 0 0.00 . 0 bcgsc.ca 37 7 55706496 55706496 + RNA SNP T T C rs7791528 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TACCAATAGCACC 39 8 0.21 42 0 0 0 0 . 360132 bcgsc.ca 37 7 55774888 55774888 + RNA SNP C C T rs12666519 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGAAGCGTGCCA 328 25 0.08 335 0 0 13 0 0.00 . 0 bcgsc.ca 37 7 56356744 56356744 + RNA SNP G G T rs3813510 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGTCTGCTGGGT 56 5 0.09 81 1 0.012345679 0 0 . 0 bcgsc.ca 37 7 63602199 63602199 + RNA SNP A A G rs191758847 by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTGGCAATGACAA 31 4 0.13 31 0 0 2 0 0.00 CCT6P3 0 broad.mit.edu 37 7 64528813 64528814 + RNA INS - - T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGTAACTTTTTT 9 2 0.22 7 0 0 0 0 . 0 bcgsc.ca 37 7 65266945 65266945 + RNA SNP G G A rs73701013 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTTCCTGTATGTA 45 5 0.11 39 0 0 0 0 AUTS2 26053 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 70255922 70255922 + Silent SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_015570 exon19 c.G3720T p.L1240L TCCTCTGTCCGCA 69 11 0.16 83 0 0 121 30 0.25 LOC100133091 22932 bcgsc.ca 37 7 76247668 76247668 + Silent SNP G G A rs1636619 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGCACCGTGGCTC 489 43 0.09 529 4 0.0075614367 1 0 0.00 . 0 bcgsc.ca 37 7 79726151 79726151 + RNA SNP G G T rs10239304 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAACATGATGACT 33 10 0.30 28 0 0 0 0 ZNF804B 219578 bcgsc.ca 37 7 88964226 88964227 + Missense_Mutation DNP CC CC AG novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb ZNF804B,NS,carcinoma,0,1 ZNF804B NM_181646 exon4 c.C1931G p.P644S TGCAGTCCTCATT 162 7 0.04 194 0 0 322 1 0 0 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142651427 142651427 + Missense_Mutation SNP C C G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_000420 exon8 c.G768C p.Q256H TCCCAGCTGATTC 73 22 0.30 103 0 0 91 24 0.26 . 0 bcgsc.ca;mdanderson.org 37 7 154989982 154989982 + Missense_Mutation SNP G G A rs28664023 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CACCCCGAATCAC 180 26 0.14 204 0 0 0 0 . 0 bcgsc.ca 37 7 155174898 155174898 + Missense_Mutation SNP C C G novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GGGGAGCCTGGCT 66 6 0.09 39 0 0 0 0 FAM86B2 653333 bcgsc.ca 37 8 12287957 12287957 + Missense_Mutation SNP C C T rs2898329 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . FAM86B2 NM_001137610 exon4 c.G244A p.E82K CAGCCTCGTGCTG 272 20 0.07 296 3 0.0101351351 19 0 0 . 0 bcgsc.ca 37 8 13880224 13880224 + RNA SNP G G A rs4831261 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCGGCCGTATAAT 119 9 0.08 140 0 0 0 0 . 0 bcgsc.ca 37 8 13880562 13880562 + RNA SNP G G T rs7003822 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACGTAAGACAATC 151 19 0.13 230 0 0 0 0 . 137012 bcgsc.ca 37 8 15663805 15663805 + RNA SNP C C A rs73199378 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTACACCACATG 56 6 0.11 70 0 0 0 0 . 724059 bcgsc.ca 37 8 20792070 20792070 + RNA SNP G G C rs11776249 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AATCCAGTTGCAG 55 11 0.20 45 0 0 0 0 C8orf58 541565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 22459522 22459522 + Missense_Mutation SNP C C T rs147143680 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001013842 exon4 c.C695T p.P232L CTTTACCGTCCCC 108 28 0.26 111 0 0 0 57 18 0.32 . 29778 bcgsc.ca 37 8 29885662 29885662 + RNA SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGCAGGTAGCAC 70 9 0.13 85 0 0 2 0 0.00 . 29778 bcgsc.ca 37 8 29886264 29886264 + RNA DEL A A - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTAATAAAAACC 79 16 0.20 77 0 0 3 0 0.00 . 0 bcgsc.ca 37 8 30841331 30841331 + RNA SNP C C T rs2080720 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTATTACCCACTG 35 9 0.26 40 0 0 0 0 . 0 bcgsc.ca 37 8 30841522 30841522 + RNA SNP A A G rs2344121 bycluster;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGAGGAAGCCCCT 55 5 0.09 63 0 0 0 0 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 57294571 57294571 + RNA SNP C C G rs10216409 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ATGGTGCTTTTAA 120 21 0.18 166 1 0.0060240964 0 0 . 0 bcgsc.ca 37 8 61851466 61851466 + RNA SNP T T C rs3748648 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGATCTCCTACA 168 9 0.05 189 0 0 1 0 0.00 . 0 bcgsc.ca 37 8 70042263 70042263 + RNA SNP A A G rs67905920 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCGTGCAGAGATG 50 9 0.18 57 0 0 2 0 0.00 . 6661 bcgsc.ca 37 8 88801868 88801868 + RNA SNP T T G rs16873107 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGAGGTCTTGGG 84 5 0.06 93 1 0.0107526882 0 0 FAM83A 84985 bcgsc.ca 37 8 124221677 124221681 + Frame_Shift_Del DEL AAACA AAACA - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AAACA AAACA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . FAM83A NM_207006 exon5 c.1045_1049del p.349_350del GAAAGTAAACAAA 97 3 0.03 92 0 0 64 0 0 . 0 bcgsc.ca 37 8 125933052 125933052 + RNA SNP T T C rs17395997 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTTAAATTTAGAG 66 7 0.11 108 1 0.0092592593 0 0 . 0 bcgsc.ca 37 8 143719983 143719983 + RNA SNP G G C rs2280881 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CATGACGCCAGTG 180 18 0.10 179 0 0 0 0 . 100132467 bcgsc.ca 37 9 6669375 6669375 + RNA SNP C C G rs2297556 bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TTGCTGCATTGTT 65 7 0.11 74 0 0 0 0 . 0 bcgsc.ca 37 9 29826486 29826486 + RNA SNP G G A rs79694178 byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACTACGCTTAAC 30 5 0.17 34 0 0 0 0 . 441391 bcgsc.ca 37 9 30689445 30689445 + RNA SNP G G A rs200326968 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGAGGAGGAAGTG 443 18 0.04 492 0 0 37 0 0.00 . 441391 bcgsc.ca 37 9 30689459 30689459 + RNA SNP A A C rs201295283 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGAACAAGGGGA 430 20 0.05 483 0 0 4 2 0.50 . 441391 bcgsc.ca 37 9 30690005 30690005 + RNA SNP A A C rs78196531 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GCCCCCACCATCT 233 15 0.06 276 1 0.0036231884 1 0 0.00 . 0 bcgsc.ca 37 9 40610136 40610136 + RNA SNP G G A rs76194885 bycluster;byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CAGTGGGGCATCA 405 22 0.05 577 1 0.0017331023 2 0 0.00 CNTNAP3B 728577 bcgsc.ca 37 9 43822686 43822686 + Missense_Mutation SNP C C A rs62555055 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . CNTNAP3B NM_001201380 exon8 c.C1240A p.R414S CTTCAACGTGGTT 235 25 0.11 298 2 0.0067114094 37 0 0 CNTNAP3B 728577 bcgsc.ca 37 9 43822704 43822704 + Missense_Mutation SNP G G A rs62555056 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . CNTNAP3B NM_001201380 exon8 c.G1258A p.V420I AGTTTCGTCCTCT 236 22 0.09 301 0 0 37 0 0 . 0 bcgsc.ca 37 9 76089841 76089841 + RNA SNP C C A rs278746 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGCGAGCAGCCCA 31 4 0.13 36 0 0 0 0 . 0 bcgsc.ca 37 9 80834173 80834173 + RNA SNP A A G rs878922 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGACTTATGTCCA 101 17 0.17 110 1 0.0090909091 0 0 . 0 bcgsc.ca 37 9 88401021 88401021 + RNA SNP A A G rs11141102 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GATCATAAGGCTG 208 15 0.07 253 1 0.0039525692 0 0 LOC286238 0 bcgsc.ca 37 9 91262493 91262494 + RNA DNP AG AG CT novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AG AG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001100111 exon2 c.C149A . ATTTCCAGGTCTC 138 8 0.06 144 1 0.0069444444 0 0 LOC286238 0 bcgsc.ca 37 9 91262522 91262522 + RNA SNP T T A rs28429833 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_001100111 exon2 c.A121T p.N41Y TTGGATTAAGCAC 131 7 0.05 149 0 0 0 0 . 100287922 bcgsc.ca 37 9 99983312 99983312 + RNA SNP C C T rs12235734 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CGCTACCTGTCCT 42 6 0.14 45 0 0 0 0 LAMC3 10319 bcgsc.ca 37 9 133901819 133901820 + Missense_Mutation DNP CC CC AG novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 CC CC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . LAMC3 NM_006059 exon2 c.C522G p.P174Q GCCGGCCCGAGGG 170 6 0.04 188 0 0 167 72 0 0.00 . 0 bcgsc.ca 37 9 138340462 138340462 + RNA SNP A A G rs10732637 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAAGGGATAGATC 32 10 0.31 41 0 0 0 0 . 0 bcgsc.ca 37 9 141035935 141035935 + RNA SNP T T C rs115489568 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCTCTCTAGCAGT 80 9 0.11 51 0 0 0 0 . 0 bcgsc.ca 37 9 141038257 141038257 + RNA SNP T T G rs2507153 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGACTTGGCCCC 36 5 0.14 29 0 0 0 0 . 0 bcgsc.ca 37 9 141038277 141038277 + RNA SNP A A G rs28521831 bycluster TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCCACCAGGGCAT 30 6 0.20 23 0 0 0 0 LOC100873065 729650 bcgsc.ca 37 X 22454639 22454639 + RNA SNP C C T rs7391306 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AAGTTTCTGAGAC 98 5 0.05 100 0 0 0 0 ARX 170302 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 25031217 25031217 + Missense_Mutation SNP G G A novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . NM_139058 exon2 c.C895T p.P299S CTTCCGGGTGCAG 90 42 0.47 67 0 0 2 1 0.50 MAGEB16 139604 ucsc.edu 37 X 35821055 35821056 + Missense_Mutation DNP AT AT GA novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 AT AT Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . MAGEB16 NM_001099921 exon2 c.T743A p.M280E CCCAGAATGCTCA 171 20 0.12 163 3 0.018404908 64 0 0 KDM6A 7403 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 44918601 44918602 + Frame_Shift_Del DEL TA TA - novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 TA TA Unknown Untested Somatic . WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . KDM6A NM_021140 exon12 c.1083_1084del p.361_362del ACTCTCTATGAAT 216 0 0.00 228 0 0 274 19 0 0.00 . 0 bcgsc.ca 37 X 55683421 55683421 + RNA SNP A A G rs187148944 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AGGCCTATATGTT 141 6 0.04 105 0 0 0 0 . 0 bcgsc.ca 37 X 65176531 65176531 + RNA SNP T T C rs199968155 TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACTGGTCCTGAA 309 17 0.06 217 0 0 81 0 0.00 . 0 bcgsc.ca 37 X 65176539 65176539 + RNA SNP G G C rs112831485 byfrequency TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTGAAGGTGCAGA 317 18 0.06 233 0 0 55 0 0.00 FAM155B 27112 ucsc.edu 37 X 68749750 68749750 + Missense_Mutation SNP G G T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . FAM155B NM_015686 exon3 c.G1370T p.G457V GATTGGGGCTGGA 54 5 0.09 56 0 0 44 50 0 0.00 . 254700 bcgsc.ca 37 X 89367831 89367831 + RNA SNP C C T rs111832781 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GTCGTCCGTTTCG 36 6 0.17 32 0 0 1 0 0.00 . 254700 bcgsc.ca 37 X 89368160 89368160 + RNA SNP G G A rs112135433 bycluster;byfrequency;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . ACGTGGGTTCATG 84 6 0.07 78 0 0 0 0 . 0 bcgsc.ca 37 X 99405357 99405357 + RNA SNP T T C rs5967081 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACAGATTTCCTA 86 11 0.13 62 0 0 0 0 . 84443 bcgsc.ca 37 X 106846552 106846552 + Silent SNP G G A rs141655380 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . AACTTCGGCGACT 244 8 0.03 266 0 0 2 0 0.00 . 286423 bcgsc.ca 37 X 122250996 122250996 + Missense_Mutation SNP G G T rs6648942 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . GAGTATGTGGCCT 230 16 0.07 243 1 0.0041152263 1 0 0.00 . 0 bcgsc.ca 37 X 134807372 134807372 + RNA SNP A A G rs7890081 bycluster;by2hit2allele;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CTTCTCAAGTTGC 172 26 0.15 134 0 0 0 0 . 0 bcgsc.ca 37 X 134814932 134814932 + RNA SNP G G T rs111943338 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGGAACGTTTCTG 218 27 0.12 194 1 0.0051546392 0 0 . 0 bcgsc.ca 37 X 141260813 141260813 + RNA SNP G G T rs1883360 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TGTATAGCTTGGC 39 7 0.18 45 0 0 0 0 . 0 bcgsc.ca 37 X 147279972 147279972 + RNA SNP T T C rs142596624 bycluster;by1000genomes TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . TCTGGATACTTAA 41 4 0.10 53 0 0 0 0 . 286544 bcgsc.ca 37 Y 14107272 14107272 + RNA SNP C C T novel TCGA-W4-A7U3-01A-12D-A435-10 TCGA-W4-A7U3-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 6da5c14a-faa6-4741-a887-cc88c5d75ce2 c18a12ea-c02c-4166-8df1-b83a210c7dfb . . . . . . CCATGGCGGGCCA 67 16 0.24 108 0 0 5 0 0.00