Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MACF1 23499 broad.mit.edu 37 1 39801169 39801169 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . MACF1 . . . . ATGCTCGGGTGAA 377 7 0.02 370 1 0.0027027027 909 0 0 CYP4Z1 199974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 47533216 47533216 + Silent SNP C C A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_178134 exon1 c.C54A p.I18I GCTGATCCTCCTC 117 37 0.32 110 0 0 0 0 ANKRD13C 81573 broad.mit.edu 37 1 70820000 70820000 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . ANKRD13C NM_030816 exon1 c.C92T p.A31V GCAGCCGCCGCTT 77 4 0.05 75 0 0 36 15 0 0.00 WDR63 126820 mdanderson.org 37 1 85573731 85573731 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_145172 exon15 c.G1569T p.W523C TTTTTGGGATATT 40 3 0.08 63 0 0 0 0 SEC22B 9554 broad.mit.edu 37 1 145109975 145109976 + RNA INS - - C rs11458983 bycluster TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . . . . . AACTTTGCTAAAG 9 4 0.44 6 0 0 0 0 SLC27A3 11000 broad.mit.edu 37 1 153750946 153750946 + Missense_Mutation SNP T T C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . SLC27A3 NM_024330 exon6 c.T1505C p.F502S ATATCTTCCCCTT 236 5 0.02 197 0 0 42 68 0 0.00 IRF6 3664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 209968742 209968742 + Nonsense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_006147 exon5 c.G401A p.W134X TCATCCCAGGGAG 90 13 0.14 83 0 0 18 1 0.06 ERO1LB 56605 broad.mit.edu 37 1 236416763 236416763 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . ERO1LB NM_019891 exon3 c.C265A p.H89N AACAGTGGCCATC 263 6 0.02 204 0 0 48 4 0 0.00 SDCCAG8 10806 mdanderson.org 37 1 243471336 243471336 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab SDCCAG8,NS,carcinoma,0,2 SDCCAG8 NM_006642 exon8 c.G786T p.E262D TAAAGAGCAACTA 119 5 0.04 124 0 0 0 2 14 0 0.00 C10orf40 283025 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 10 61718595 61718595 + RNA SNP T T A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . . . . . TAAAATTGATTTT 197 36 0.18 186 0 0 0 0 TRPM5 29850 bcgsc.ca;mdanderson.org 37 11 2429028 2429028 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TRPM5 NM_014555 exon19 c.C2897T p.T966I ACATTGGTGACCA 100 5 0.05 115 0 0 86 0 0 OR52N4 390072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5776663 5776663 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab OR52N4,NS,carcinoma,0,1 OR52N4 NM_001005175 exon1 c.C693T p.S231S CCTCTCCTCAGCA 173 25 0.14 152 0 0 0 1 1 0 0.00 INCENP 3619 mdanderson.org 37 11 61897743 61897743 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_020238 exon4 c.C744T p.V248V AGGGGTCGGGACG 48 3 0.06 44 0 0 31 0 0.00 CABP2 51475 mdanderson.org 37 11 67290111 67290111 + Missense_Mutation SNP T T C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_016366 exon2 c.A119G p.D40G GCGGGGTCCCCCT 64 4 0.06 75 1 0.0133333333 0 0 SYTL2 54843 broad.mit.edu 37 11 85437269 85437269 + Frame_Shift_Del DEL T T - novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . SYTL2 NM_206927 exon1 c.231delA p.K77fs CATAACTTTTTTT 485 7 0.01 190 0 0 231 0 0 HYOU1 10525 mdanderson.org 37 11 118925755 118925755 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001130991 exon6 c.C437A p.P146H TCCTCAGGTGAGA 49 3 0.06 69 0 0 103 0 0.00 C2CD2L 9854 broad.mit.edu;mdanderson.org 37 11 118983227 118983227 + Missense_Mutation SNP T T C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab C2CD2L,left_upper_lobe,carcinoma,-1,1 C2CD2L NM_014807 exon9 c.T1120C p.S374P GTGGGCTCCCCCT 68 4 0.06 83 0 0 39 1 13 0 0.00 FOXM1 2305 hgsc.bcm.edu 37 12 2968602 2968644 + Frame_Shift_Del DEL TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC - novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC TGATTCCTCTTTGAAAGATGGGGCCGGGGAGGGCCACTCTTCC Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . FOXM1 NM_202002 exon10 c.1567_1609del p.523_537del GTGAGATGATTCC 83 0 0.00 53 0 0 62 283 0 0.00 ACACB 32 broad.mit.edu 37 12 109629568 109629568 + Splice_Site SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . ACACB NM_001093 exon13 c.G2295T p.Q765H AGTGCAGGTAGGG 225 4 0.02 203 0 0 330 1 0 0.00 TBX5 6910 broad.mit.edu 37 12 114836479 114836479 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TBX5 NM_000192 exon5 c.G409A p.V137M GGTGCACGTACAG 163 5 0.03 151 0 0 188 2 0 0.00 NCOR2 9612 mdanderson.org 37 12 124825195 124825195 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_006312 exon37 c.C5291T p.A1764V TGGGGCGCGGTGG 30 4 0.13 30 0 0 83 11 0.13 . 0 broad.mit.edu;bcgsc.ca 37 14 107049074 107049074 + RNA SNP C C A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . . . . . GAATCACCTTTTA 138 22 0.16 140 0 0 3 0 0.00 MRPS11 64963 bcgsc.ca 37 15 89010689 89010689 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . MRPS11 . . . . CAGTCCCGGAACT 12 3 0.25 24 0 0 14 0 0 FAM173A 65990 mdanderson.org 37 16 771841 771841 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_023933 exon3 c.G308T p.G103V CCGTGGGCTACGA 14 2 0.14 34 0 0 66 0 0.00 GRIN2A 2903 hgsc.bcm.edu 37 16 9862936 9862936 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_000833 exon13 c.G2367A p.E789E CAGCTCCTCCATC 85 4 0.05 80 0 0 0 0 GRIN2A 2903 mdanderson.org 37 16 9916124 9916124 + Missense_Mutation SNP G G T rs376029542 alternate_allele TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001134407 exon10 c.C2165A p.T722K TACCCCGTTTTCA 99 5 0.05 109 0 0 0 0 RBL2 5934 mdanderson.org 37 16 53495691 53495691 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab RBL2,NS,carcinoma,-1,2 RBL2 NM_005611 exon10 c.G1385T p.R462I CTAACAGACTGAA 96 5 0.05 90 0 0 -1 2 6 0 0.00 NLGN2 57555 mdanderson.org 37 17 7320871 7320871 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_020795 exon7 c.G2261T p.G754V GCGTCGGGGCGGA 18 2 0.11 11 0 0 14 0 0.00 WRAP53 55135 mdanderson.org 37 17 7606607 7606607 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001143991 exon11 c.G1450T p.V484L CAGCGTGTGTTTC 41 3 0.07 33 0 0 258 0 0.00 LRRC48 83450 broad.mit.edu 37 17 17897710 17897710 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . LRRC48 NM_031294 exon7 c.G689T p.R230L CGCAGCGGGAGGA 63 3 0.05 38 0 0 49 0 0 KRTAP4-3 85290 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 39323995 39323995 + Missense_Mutation SNP A A C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . KRTAP4-3 NM_033187 exon1 c.T430G p.C144G GGCAGCACTGGGG 177 9 0.05 157 1 0.0063694268 40 0 0 DNAH17 8632 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 76556825 76556825 + Silent SNP T T C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . DNAH17 NM_173628 exon13 c.A2028G p.K676K CACCGCTTTGCTG 80 5 0.06 68 4 0.0588235294 347 0 0 FN3KRP 79672 broad.mit.edu 37 17 80680735 80680735 + Silent SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab FN3KRP,NS,carcinoma,+2,1 FN3KRP NM_024619 exon4 c.G441T p.V147V TGACGTGGTGACG 324 6 0.02 246 0 0 31 1 172 0 0.00 OR7G3 390883 mdanderson.org 37 19 9237191 9237191 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001001958 exon1 c.C436A p.L146M ACAGCAGAAGCAG 89 4 0.04 113 1 0.0088495575 0 0 CCDC151 115948 mdanderson.org 37 19 11532404 11532404 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_145045 exon11 c.C1531A p.Q511K GCGCCTGCAGTTT 133 5 0.04 157 0 0 7 0 0.00 ZNF439 90594 hgsc.bcm.edu 37 19 11978338 11978338 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_152262 exon3 c.G454T p.E152X TGTCAGGAATATG 123 5 0.04 109 0 0 6 0 0.00 ANO8 57719 mdanderson.org 37 19 17435612 17435612 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_020959 exon17 c.G3245A p.G1082D CTGCTGCCACTGC 52 4 0.08 67 0 0 8 0 0.00 JAK3 3718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17945938 17945938 + Silent SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_000215 exon15 c.C2001T p.I667I CAGCTTGATGAAG 112 18 0.16 132 0 0 9 0 0.00 ZNF792 126375 broad.mit.edu 37 19 35454540 35454540 + Silent SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . ZNF792 NM_175872 exon1 c.C27A p.P9P CTGCGCGGGGTCC 224 5 0.02 228 1 0.0043859649 46 0 0 FFAR1 2864 mdanderson.org 37 19 35842505 35842505 + Silent SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_005303 exon1 c.G51T p.A17A CTTTGCGCTGGGC 22 2 0.09 29 0 0 0 0 SCAF1 58506 mdanderson.org 37 19 50161566 50161566 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_021228 exon11 c.G3849T p.K1283N TCGCAAGCCAGGG 34 3 0.09 31 0 0 271 0 0.00 KCNK3 3777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 26950833 26950833 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_002246 exon2 c.C582T p.F194F CTGCTTCATCACC 184 35 0.19 150 0 0 5 2 0.40 C2orf81 388963 broad.mit.edu 37 2 74641573 74641573 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . C2orf81 NM_001145054 exon4 c.C1650A p.N550K GCTCCGGTTCCAC 201 5 0.02 225 1 0.0044444444 23 19 0 0.00 FER1L5 90342 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 97363297 97363297 + RNA SNP A A T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . FER1L5 NM_001113382 exon37 c.A4199T p.K1400M GGTTCAAGTCCAG 287 9 0.03 285 0 0 113 0 0 RGPD4 285190 hgsc.bcm.edu 37 2 108443536 108443536 + Missense_Mutation SNP C C G novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab RGPD4,caecum,carcinoma,-1,1 RGPD4 NM_182588 exon1 c.C67G p.R23G TCGCCTCGAAAGG 116 4 0.03 133 0 0 -1 1 0 0 WASH2P 0 broad.mit.edu;bcgsc.ca 37 2 114355129 114355129 + RNA SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . . . . . CCATCCGCCAAGC 195 17 0.09 168 1 0.005952381 437 11 0.03 TMX4 56255 broad.mit.edu 37 20 8000252 8000252 + Silent SNP A A C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TMX4 NM_021156 exon1 c.T9G p.G3G GCGCCCACCCGCC 35 11 0.31 39 16 0.4102564103 39 5 0 0.00 FRG1B 0 broad.mit.edu 37 20 29632635 29632635 + Missense_Mutation SNP C C G rs375238322 TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . FRG1B . . . . CCAAGACCACAAA 871 6 0.01 731 0 0 181 114 7 0.06 rescued with RNA-seq ELMO2 63916 hgsc.bcm.edu 37 20 45014804 45014804 + Silent SNP G G A rs201990540 bycluster;by1000genomes TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab ELMO2,NS,carcinoma,-1,1 ELMO2 NM_182764 exon8 c.C636T p.A212A TTCCTCGGCTATC 79 6 0.08 77 2 0.025974026 0.002 -1 1 16 0 0.00 HELZ2 85441 mdanderson.org 37 20 62191976 62191976 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001037335 exon17 c.G7356A p.R2452R GGGCGGCCTCCTC 44 4 0.09 43 0 0 103 0 0.00 KRTAP13-1 140258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 21 31768921 31768921 + Missense_Mutation SNP T T C rs141793094 bycluster TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_181599 exon1 c.T517C p.X173R TACTATTGATCAT 170 47 0.28 164 0 0 0 0 0 HIRA 7290 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 19348846 19348846 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab HIRA,NS,carcinoma,0,1 HIRA NM_003325 exon17 c.G1999A p.A667T TCTCTGCGGTTAG 143 6 0.04 108 0 0 0 1 56 0 0.00 LOC96610 0 broad.mit.edu 37 22 22661474 22661474 + RNA SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . . . . . CAGATGCGTCTGA 118 6 0.05 77 1 0.012987013 96 0 0.00 ZNF280B 140883 mdanderson.org 37 22 22842206 22842206 + Silent SNP T T A rs11109 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_080764 exon4 c.A1518T p.S506S TTCCAGTGACACT 117 24 0.21 104 0 0 6 4 0.67 MTMR3 8897 broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 30416630 30416630 + Silent SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . MTMR3 NM_021090 exon17 c.G2982A p.L994L GTGGCTGCATAGC 135 6 0.04 123 0 0 106 34 0 0.00 TNRC6B 23112 broad.mit.edu 37 22 40658045 40658045 + Missense_Mutation SNP C C A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TNRC6B NM_001024843 exon7 c.C433A p.Q145K CGTGGGCAGCCCC 175 6 0.03 219 2 0.0091324201 195 3 0 0.00 DENND6B 414918 mdanderson.org 37 22 50752284 50752284 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001001794 exon14 c.C1162A p.H388N GGAGGTGGGCCGT 43 3 0.07 66 0 0 31 0 0.00 TPRXL 0 broad.mit.edu 37 3 14105964 14105965 + In_Frame_Ins INS - - AGC rs142895893 bycluster;by1000genomes TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TPRXL . . . . CAGCTCTAGCAGC 7 3 0.43 7 0 0 10 0 0 MST1 4485 hgsc.bcm.edu;broad.mit.edu 37 3 49723603 49723603 + Missense_Mutation SNP G G A rs199969873 bycluster;by1000genomes TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab MST1,NS,carcinoma,0,5 MST1 NM_020998 exon9 c.C1039T p.R347W GGTTCCGGCAGAA 49 6 0.12 75 1 0.0133333333 0.005 0 5 8 0 0.00 TLR9 54106 mdanderson.org 37 3 52256987 52256987 + Missense_Mutation SNP G G T rs373748615 alternate_allele TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_017442 exon2 c.C1345A p.Q449K CAGGCTGCAGCCA 44 3 0.07 81 0 0 3 0 0.00 DPPA4 55211 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 109047903 109047903 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . DPPA4 NM_018189 exon6 c.C712T p.L238F CAGGGAGACTTTT 348 10 0.03 362 0 0 56 1072 67 0.06 rescued with RNA-seq CPZ 8532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 8621216 8621216 + Missense_Mutation SNP G G C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001014447 exon11 c.G1831C p.G611R TCTTTGGGGGAGG 127 30 0.24 136 0 0 12 0 0.00 UGT2B10 7365 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 69682264 69682264 + Missense_Mutation SNP G G C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . UGT2B10 . . . . GTCCTGGCTACTC 264 8 0.03 357 0 0 134 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 126240963 126240963 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_024582 exon1 c.G3397T p.G1133X CCAAATGGAGAAG 114 24 0.21 96 0 0 0 0 PPID 5481 mdanderson.org 37 4 159632000 159632000 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_005038 exon8 c.G895A p.A299T CAAGAGCCTACAA 82 4 0.05 103 0 0 123 0 0.00 SEMA5A 9037 broad.mit.edu 37 5 9202166 9202166 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . SEMA5A NM_003966 exon9 c.G833A p.C278Y CGGGAGCAGTTCA 371 8 0.02 429 1 0.0023310023 236 0 0 SPEF2 79925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 35753823 35753823 + Missense_Mutation SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_024867 exon24 c.C3428T p.T1143I AGGACACTCTTGG 85 17 0.20 110 0 0 1 0 0.00 SLCO4C1 353189 mdanderson.org 37 5 101631956 101631956 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_180991 exon1 c.C11A p.A4D CCTTTGGCGCTCT 55 3 0.05 99 0 0 3 0 0.00 ANKHD1 54882 hgsc.bcm.edu 37 5 139781730 139781730 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab ANKHD1-EIF4EBP3,NS,carcinoma,0,2 ANKHD1-EIF4EBP3 NM_017978 exon1 c.G178A p.G60S AGCAGCGGCGGCG 29 3 0.10 28 1 0.0357142857 0 2 11 0 0.00 SLC6A7 6534 hgsc.bcm.edu 37 5 149578888 149578888 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_014228 exon5 c.G682T p.V228L GTCATCGTGTTCC 71 4 0.06 78 0 0 1 0 0.00 ZNF165 7718 mdanderson.org 37 6 28053615 28053615 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_003447 exon2 c.G357T p.E119D AGAGGAGGCAGTG 52 3 0.06 41 0 0 12 0 0.00 KCNQ5 56479 broad.mit.edu 37 6 73843232 73843232 + Missense_Mutation SNP A A G novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . KCNQ5 NM_001160133 exon11 c.A1393G p.R465G GACAGGAGGTCCC 252 5 0.02 190 0 0 153 1 0 0.00 SEC63 11231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 108214783 108214783 + Nonsense_Mutation SNP G G C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_007214 exon16 c.C1577G p.S526X TTTTTTGATTTAG 89 16 0.18 102 0 0 212 6 0.03 FIG4 9896 mdanderson.org 37 6 110064975 110064975 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_014845 exon10 c.G1137T p.K379N AGTGAAGGTATGA 69 5 0.07 68 0 0 18 0 0.00 GPER 2852 mdanderson.org 37 7 1132183 1132183 + Silent SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001505 exon2 c.G819T p.L273L CTGGCTGCCGGAG 45 3 0.07 36 0 0 0 0 RADIL 55698 ucsc.edu 37 7 4874814 4874814 + Silent SNP G G T rs13232656 alternate_allele TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . RADIL NM_018059 exon4 c.C840A p.P280P GCTGGAGGGGGTC 39 4 0.10 35 0 0 110 19 0 0.00 CCDC146 57639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 76889506 76889506 + Silent SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_020879 exon8 c.G939A p.K313K GGTCAAGCTATTG 294 44 0.15 260 0 0 2 0 0.00 EZH2 0 broad.mit.edu 37 7 148512600 148512600 + Missense_Mutation SNP T T C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . EZH2 NM_004456 exon13 c.A1544G p.K515R TAACCCTTTTTCA 397 5 0.01 302 0 0 823 88 0 0.00 MFHAS1 9258 mdanderson.org 37 8 8750295 8750295 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_004225 exon1 c.C274A p.L92M GGACCAGGACGCG 54 4 0.07 85 0 0 0 0 RP1L1 94137 mdanderson.org 37 8 10470155 10470155 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_178857 exon4 c.C1453A p.P485T CAGAGGGGCTGGC 24 3 0.13 26 0 0 0 0 PTK2B 2185 broad.mit.edu 37 8 27315955 27315955 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . PTK2B NM_173174 exon36 c.G2959T p.A987S GTGGACGCCAAGA 95 3 0.03 139 1 0.0071942446 304 54 0 0.00 BAI1 575 mdanderson.org 37 8 143566121 143566121 + Silent SNP C C T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001702 exon12 c.C2304T p.N768N AGACAACCTGGGT 40 3 0.08 37 0 0 0 0 TYRP1 7306 broad.mit.edu 37 9 12702271 12702271 + Splice_Site SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . TYRP1 NM_000550 exon5 c.G914T p.S305I CTGCAGGCACCGA 202 6 0.03 221 1 0.0045248869 60 0 0 NPR2 4882 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 35802591 35802591 + Missense_Mutation SNP G G A rs180950551 bycluster;by1000genomes TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_003995 exon11 c.G1802A p.R601H GTCCTCGTGGGAG 235 12 0.05 210 0 0 0.001 13 0 0.00 SPATA31D1 389763 broad.mit.edu 37 9 84607496 84607496 + Missense_Mutation SNP G G A rs374319352 TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab FAM75D4,colon,carcinoma,0,4 . NM_001001670 exon4 c.G2111A p.R704H TGCCCCGCAGAAT 331 5 0.02 251 0 0 4 0 0 BICD2 23299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 95482926 95482926 + Missense_Mutation SNP G G C novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_001003800 exon4 c.C718G p.L240V CCTCCAGCTGCCG 181 19 0.10 179 0 0 11 2 0.18 C9orf96 169436 mdanderson.org 37 9 136269921 136269921 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . NM_153710 exon17 c.G1741T p.A581S CTGGCGGCCTTCA 48 3 0.06 39 0 0 1 0 0.00 ND2 0 hgsc.bcm.edu 37 MT 4920 4920 + Missense_Mutation SNP G G A novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . . ENST00000361453 exon1 c.G451A p.V151M CTAAACGTAAGCC 11 8 0.73 7 0 0 0 0 RIBC1 158787 broad.mit.edu 37 X 53455230 53455230 + Splice_Site SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . RIBC1 NM_144968 exon5 c.200-1G>T . CCCCCAGGTACCA 106 4 0.04 101 0 0 20 0 0 EDA2R 60401 broad.mit.edu 37 X 65819573 65819573 + Missense_Mutation SNP G G T novel TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . EDA2R NM_001242310 exon6 c.C710A p.P237H AGGATAGGGTTAA 170 5 0.03 147 0 0 30 4 0 0.00 EDA 1896 broad.mit.edu 37 X 69176947 69176947 + Missense_Mutation SNP G G A rs132630314 TCGA-VF-A8AD-01A-11D-A435-10 TCGA-VF-A8AD-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq feefbc56-4b2f-46b6-a16f-6b43fd128cb8 435363f1-972b-4055-bf34-528f12078dab . EDA NM_001399 exon2 c.G467A p.R156H TTCGCCGCAATAA 398 6 0.02 347 0 0 61 1 0 0.00