Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TMEM51-AS1 200197 hgsc.bcm.edu 37 1 15439098 15439098 + RNA SNP C C T rs114844404 bycluster TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . TTTTCTCCTCCCG 93 24 0.26 81 0 0 2 0 0.00 LOC100129620 0 broad.mit.edu 37 1 99474093 99474094 + RNA INS - - A rs57656522 bycluster TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . AGCAACTAAAAAA 8 4 0.50 6 0 0 1 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109259 145109260 + RNA INS - - A rs11386827 bycluster;by1000genomes TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . CCAGCCCGGGGGC 7 3 0.43 5 0 0 1 0 0.00 FLG 2312 broad.mit.edu;mdanderson.org 37 1 152276832 152276832 + Silent SNP G G C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . FLG NM_002016 exon3 c.C10530G p.S3510S CTGAGTGGAAGCT 86 4 0.05 82 0 0 900 102 0 0.00 FLG 2312 ucsc.edu 37 1 152281562 152281562 + Missense_Mutation SNP A A G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e FLG,NS,carcinoma,+2,1 FLG NM_002016 exon3 c.T5800C p.W1934R CAGACCACCTCTC 202 1 0.00 155 1 0.0064516129 900 1 28 24 0.86 MUC1 4582 broad.mit.edu 37 1 155161799 155161799 + Missense_Mutation SNP T T G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . MUC1 NM_001204286 exon2 c.A361C p.T121P GCGGGGTGGTGGA 47 11 0.23 27 7 0.2592592593 94 8 0 0.00 NR1I3 9970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161200952 161200952 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001077478 exon7 c.G778A p.E260K CAGGCTCTTGGAG 146 36 0.25 107 0 0 0 0 RBM17 84991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 6157491 6157491 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e RBM17,NS,carcinoma,0,1 RBM17 NM_001145547 exon12 c.G1178A p.R393K AATTCAGGGTCTT 50 10 0.20 45 0 0 0 1 384 189 0.49 DCLRE1C 64421 mdanderson.org 37 10 14951005 14951005 + Missense_Mutation SNP T T C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001033855 exon14 c.A1481G p.K494R TTTCTTTTAAAGA 50 3 0.06 53 0 0 5 0 0.00 DEAF1 10522 mdanderson.org 37 11 674705 674705 + Missense_Mutation SNP A A G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_021008 exon10 c.T1334C p.L445P AGCTCCAGCCCAT 38 3 0.08 56 0 0 164 0 0.00 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1261503 1261503 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e MUC5B,NS,carcinoma,0,2 MUC5B NM_002458 exon30 c.G3868A p.G1290R ATCTGCGGAAGCA 66 18 0.27 59 0 0 0 2 0 0 AMBRA1 55626 mdanderson.org 37 11 46563785 46563785 + Silent SNP G G T rs375558035 alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_017749 exon8 c.C1512A p.G504G AGCCTCGCCAGAG 36 3 0.08 47 0 0 6 0 0.00 TCN1 6947 mdanderson.org 37 11 59633919 59633919 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001062 exon1 c.C25A p.L9I CCACTAGGGGCAG 47 3 0.06 52 0 0 26 0 0.00 ASRGL1 80150 mdanderson.org 37 11 62156700 62156700 + Missense_Mutation SNP G G T rs144391767 alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001083926 exon5 c.G587T p.R196L TCGGCCGCGTTGG 33 3 0.09 23 0 0 51 0 0.00 TSGA10IP 254187 broad.mit.edu 37 11 65715748 65715751 + RNA DEL CATC CATC - rs372880030 TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 CATC CATC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . TSGA10IP . . . . TTGGATCATCCAT 6 2 0.33 16 0 0 31 0 0 LRP5 4041 mdanderson.org 37 11 68115709 68115709 + Silent SNP C C T rs191882942 bycluster;by1000genomes TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_002335 exon2 c.C486T p.H162H CGCTCACGGGTAA 11 2 0.18 16 0 0 0.001 16 0 0.00 RHNO1 83695 broad.mit.edu 37 12 2997087 2997087 + Missense_Mutation SNP A A T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001257098 exon3 c.A179T p.D60V CACCTGATTTTGA 149 15 0.10 82 6 0.0731707317 116 0 0.00 NACA 4666 broad.mit.edu 37 12 57112396 57112396 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . NACA . . . . CCTTTTGGGGAGG 57 7 0.12 34 0 0 131 0 0 TMCC3 57458 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 94976045 94976045 + Silent SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_020698 exon2 c.G348A p.E116E CTTCTTCTCAAAG 114 21 0.18 67 0 0 2 0 0.00 SLC5A8 160728 mdanderson.org 37 12 101603481 101603481 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_145913 exon1 c.G146A p.G49D CTGCGGCCGCCCA 33 3 0.09 39 0 0 0 0 ATP12A 479 mdanderson.org 37 13 25283966 25283966 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001185085 exon19 c.G2781T p.W927C GGAATGGGTGAGT 38 3 0.08 31 0 0 286 0 0.00 . 100288130 bcgsc.ca 37 13 71498254 71498254 + RNA SNP C C G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . GTCGGTCTTACTC 46 21 0.46 45 0 0 0 0 ZBTB1 22890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64989758 64989758 + Silent SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_014950 exon2 c.G1536A p.R512R TTTTAGGGACAAT 68 25 0.37 67 0 0 21 8 0.38 GPR68 0 broad.mit.edu 37 14 91701361 91701363 + In_Frame_Del DEL TCA TCA - novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 TCA TCA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . GPR68 NM_001177676 exon2 c.32_34del p.11_12del TACAGCTCATCGA 100 9 0.09 75 0 0 32 9 0 0.00 SLC25A47 283600 mdanderson.org 37 14 100789780 100789780 + Splice_Site SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_207117 exon1 c.28+1G>T . TCGGAGGTAACAG 35 3 0.09 37 0 0 0 0 HERC2 8924 broad.mit.edu 37 15 28459392 28459392 + Missense_Mutation SNP G G A rs138059246 bycluster;byfrequency TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e HERC2,NS,carcinoma,0,1 HERC2 NM_004667 exon41 c.C6385T p.R2129C GCGGGCGCACCCT 40 5 0.13 49 0 0 501 1 1 0 0.00 RYR3 6263 mdanderson.org 37 15 34145883 34145883 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e RYR3,NS,carcinoma,+1,1 RYR3 NM_001036 exon96 c.G13799T p.W4600L TGTCATGGTACAA 48 3 0.06 48 0 0 1 1 0 0 CASC5 57082 mdanderson.org 37 15 40911197 40911197 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_170589 exon10 c.G441T p.M147I CCAGATGCAACAG 32 3 0.09 44 0 0 0 0 HEXA 3073 mdanderson.org 37 15 72643501 72643501 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_000520 exon6 c.C645A p.S215R AGTGAAGCTCTCA 45 3 0.07 59 0 0 108 0 0.00 PML 5371 mdanderson.org 37 15 74315527 74315527 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_033249 exon3 c.G961T p.A321S CTGGATGCTGTGC 20 2 0.10 26 0 0 21 0 0.00 WDR24 84219 mdanderson.org 37 16 735454 735454 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_032259 exon7 c.G1822A p.A608T CGGGGGCCAGGGA 41 3 0.07 55 0 0 52 0 0.00 ARHGAP17 55114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24965936 24965936 + Silent SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001006634 exon10 c.C840T p.G280G CTTCATGCCTGTC 32 12 0.38 38 0 0 14 0 0.00 RRN3P2 0 broad.mit.edu 37 16 29102416 29102416 + RNA DEL A A - novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . AAAAATAAAAAAA 7 2 0.29 5 0 0 0 0 ITGAX 3687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31371099 31371099 + Missense_Mutation SNP T T A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_000887 exon6 c.T509A p.M170K CCACGATGATGAA 65 18 0.28 67 0 0 0 0 EDC4 23644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67911669 67911669 + Missense_Mutation SNP T T C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_014329 exon7 c.T815C p.L272P ACATGCTCCGCTC 163 33 0.20 110 0 0 12 4 0.33 VPS4A 27183 mdanderson.org 37 16 69352745 69352745 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_013245 exon5 c.G363T p.K121N GGAGAAGCCCAAC 38 3 0.08 32 0 0 149 0 0.00 COG8 84342 mdanderson.org 37 16 69369198 69369198 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_032382 exon3 c.C639A p.I213I TTGCTGGATCAGC 17 2 0.12 19 0 0 32 0 0.00 DHODH 1723 mdanderson.org 37 16 72057134 72057134 + Missense_Mutation SNP G G T rs200181357 bycluster;alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e DHODH,NS,carcinoma,+1,1 DHODH NM_001361 exon7 c.G890T p.R297L CCCTGCGCTCTGA 35 3 0.09 82 0 0 1 1 21 0 0.00 DNAH2 146754 mdanderson.org 37 17 7689596 7689596 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_020877 exon39 c.G6284A p.R2095H CATGGCGCATTCT 43 3 0.07 47 0 0 0 0 ITGA2B 3674 broad.mit.edu 37 17 42460925 42460925 + Missense_Mutation SNP C C A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . ITGA2B NM_000419 exon12 c.G1146T p.Q382H ATAGAGCTGTGTG 62 6 0.10 52 1 0.0192307692 88 6 0 0.00 NFE2L1 4779 bcgsc.ca;mdanderson.org 37 17 46136684 46136684 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . NFE2L1 NM_003204 exon6 c.C2000T p.A667V AGATGGCGGCGCA 74 5 0.07 76 0 0 60 398 0 0.00 GIP 2695 broad.mit.edu 37 17 47039146 47039146 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . GIP NM_004123 exon4 c.C293A p.A98E TCCAGCGCCCGAG 60 4 0.07 49 0 0 15 434 0 0.00 TANC2 26115 mdanderson.org 37 17 61489048 61489048 + Splice_Site SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_025185 exon20 c.3543+1G>T . GAGGTGGTAAGTA 48 3 0.06 36 0 0 0 0 ARSG 22901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 66339927 66339927 + Missense_Mutation SNP T T G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001267727 exon3 c.T401G p.I134R CTGGGATAATAGG 89 18 0.20 57 0 0 3 0 0.00 UNC13D 201294 mdanderson.org 37 17 73840402 73840402 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_199242 exon1 c.C17A p.S6Y GGATGGGAGAGGA 41 3 0.07 58 0 0 5 0 0.00 SMARCA4 6597 hgsc.bcm.edu 37 19 11144829 11144829 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_003072 exon28 c.G3904T p.V1302F GAGACCGTCAACC 84 4 0.05 79 0 0 487 0 0.00 ILVBL 10994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15233609 15233609 + Missense_Mutation SNP A A C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_006844 exon6 c.T611G p.V204G ACAAACACCGGAC 87 26 0.30 86 0 0 121 42 0.35 ANO8 57719 mdanderson.org 37 19 17439209 17439209 + Missense_Mutation SNP G G T rs202118586 TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_020959 exon13 c.C1988A p.A663E CCCTCCGCCTCGT 23 2 0.09 25 0 0 6 0 0.00 . 0 broad.mit.edu 37 19 20317771 20317772 + RNA INS - - AC rs199677845 alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . TCCTGAAACACAC 13 4 0.31 5 0 0 0 0 MEGF8 1954 mdanderson.org 37 19 42872801 42872801 + Silent SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001271938 exon36 c.C6468T p.S2156S ACTCAGCGGCCCC 38 3 0.08 28 0 0 0 0 C2orf16 84226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27804669 27804669 + Missense_Mutation SNP A A T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_032266 exon1 c.A5230T p.S1744C CATCACAGTCCCT 98 31 0.32 73 0 0 0 0 C2orf81 388963 broad.mit.edu 37 2 74642300 74642300 + Missense_Mutation SNP T T G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . C2orf81 NM_001145054 exon4 c.A923C p.Y308S GAGGGGTAGGACA 137 43 0.31 90 21 0.2333333333 23 5 0 0.00 RGPD4 285190 ucsc.edu 37 2 108487826 108487826 + Silent SNP C C T rs62150212 byfrequency;by1000genomes TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . RGPD4 NM_182588 exon20 c.C3366T p.P1122P GAAGCCCCTGTCT 13 4 0.31 15 2 0.1333333333 112 0 0 RGPD4 285190 ucsc.edu 37 2 108487829 108487829 + Silent SNP G G C rs7589903 bycluster TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . RGPD4 NM_182588 exon20 c.G3369C p.L1123L GCCCCTGTCTGGA 13 4 0.31 16 2 0.125 112 0 0 CSRNP3 80034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166514444 166514444 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e CSRNP3,NS,carcinoma,0,1 CSRNP3 NM_001172173 exon5 c.G322A p.E108K CTTGGCGAGTTTG 168 65 0.39 154 0 0 0 1 0 0 FAM117B 150864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 203591019 203591019 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_173511 exon4 c.G893A p.R298Q GCAGTCGGCATCA 232 96 0.41 242 0 0 1 1 1.00 VIL1 7429 mdanderson.org 37 2 219301338 219301338 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_007127 exon16 c.G1960T p.V654F CTAGATGTCTGGG 89 5 0.06 64 0 0 1 0 0.00 COL4A4 1286 mdanderson.org 37 2 227983443 227983443 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_000092 exon7 c.C407A p.P136H ATACCAGGTTTGC 21 2 0.10 26 0 0 1 0 0.00 C20orf27 54976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3739195 3739195 + Missense_Mutation SNP G G C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001039140 exon3 c.C225G p.S75R CAGAAAGCTGCTG 61 15 0.25 35 0 0 180 59 0.33 GDF5 8200 broad.mit.edu 37 20 34025551 34025551 + Missense_Mutation SNP A A G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . GDF5 NM_000557 exon1 c.T158C p.L53P CGGGCCAGGGGGG 36 8 0.22 42 7 0.1666666667 66 0 0 ANKRD30BP2 0 broad.mit.edu 37 21 14410884 14410885 + RNA INS - - C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . GTCCTGGCCCCGA 6 3 0.50 6 0 0 0 0 KRTAP10-4 386672 ucsc.edu 37 21 45993851 45993851 + Silent SNP C C T rs543299 TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . KRTAP10-4 NM_198687 exon1 c.C216T p.C72C GACCTGCGAGCCC 35 12 0.34 18 7 0.3888888889 44 0 0 CCR9 10803 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 45942703 45942703 + Silent SNP C C T rs201764174 TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . CCR9 NM_031200 exon3 c.C423T p.S141S CATCAGCGTGGAC 121 19 0.16 68 1 0.0147058824 45 0 0 HEG1 57493 mdanderson.org 37 3 124716650 124716650 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_020733 exon12 c.C3535A p.R1179R TCTTCCGCTTGCA 34 4 0.12 46 0 0 1 0 0.00 PIK3CB 5291 mdanderson.org 37 3 138374260 138374260 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_006219 exon22 c.C3184A p.H1062N CTGTGTGGGCCAT 116 5 0.04 123 0 0 24 0 0.00 PDS5A 23244 broad.mit.edu;mdanderson.org 37 4 39864513 39864513 + Missense_Mutation SNP T T C novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . PDS5A NM_001100399 exon25 c.A2947G p.I983V GCTTAATGTATTC 53 4 0.08 50 0 0 114 6 0 0.00 ADAMTS3 9508 mdanderson.org 37 4 73161498 73161498 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_014243 exon19 c.C2596A p.Q866K TGTACTGGAAACC 52 3 0.06 57 0 0 0 0 CLPTM1L 81037 mdanderson.org 37 5 1331993 1331993 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_030782 exon8 c.C897A p.L299L ATCAAAGAGAAGC 24 3 0.13 29 0 0 179 0 0.00 MAP1B 4131 mdanderson.org 37 5 71495134 71495134 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_005909 exon5 c.G5952T p.L1984L GCTTCTGGATGAC 29 3 0.10 28 0 0 0 0 SERINC5 256987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79465352 79465352 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001174071 exon6 c.G569A p.S190N TTGTTACTGGCTG 68 24 0.35 83 0 0 7 5 0.71 ANKRD34B 340120 mdanderson.org 37 5 79855372 79855372 + Nonsense_Mutation SNP A A T rs32857 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001004441 exon5 c.T467A p.L156X CAGGGCAACTTTG 111 5 0.05 92 0 0 0 0 ACSL6 23305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 131310650 131310650 + Missense_Mutation SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001009185 exon11 c.C1004T p.P335L TGTCTCGGAAAGA 192 60 0.31 230 0 0 1 0 0.00 PCDHB14 56122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140604522 140604522 + Missense_Mutation SNP C C A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_018934 exon1 c.C1445A p.T482N CAGGCACCAACGC 54 11 0.20 29 0 0 7 5 0.71 TAF7 6879 mdanderson.org 37 5 140699046 140699046 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_005642 exon1 c.C566A p.T189K TCCTTTGTTTCAT 61 4 0.07 76 0 0 310 0 0.00 MAPK9 5601 mdanderson.org 37 5 179663447 179663447 + Silent SNP C C T rs114045781 bycluster;byfrequency;by1000genomes TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_139070 exon12 c.G1212A p.T404T GGCCAGCGTCTGC 46 3 0.07 54 0 0 0.001 55 1 0.02 PBX2 5089 mdanderson.org 37 6 32157666 32157666 + Silent SNP G G A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_002586 exon1 c.C27T p.P9P TGGAGGGGGCGGC 60 5 0.08 39 1 0.0256410256 2 0 0.00 KLC4 89953 bcgsc.ca;mdanderson.org 37 6 43041047 43041047 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . KLC4 NM_201523 exon14 c.G1770T p.K590N GAGGAAGCTCCAG 58 5 0.09 66 0 0 89 88 0 0.00 C6orf58 352999 mdanderson.org 37 6 127898393 127898393 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001010905 exon1 c.G63T p.G21G AGCAGGGACTTCC 47 4 0.09 50 0 0 0 0 LPA 4018 hgsc.bcm.edu 37 6 160978593 160978593 + Nonsense_Mutation SNP C C A novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_005577 exon30 c.G4642T p.E1548X AGTTCTCGGTCAG 89 4 0.04 73 0 0 1 0 0.00 SP8 221833 broad.mit.edu;mdanderson.org 37 7 20824970 20824970 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . SP8 NM_182700 exon2 c.G466A p.G156S CGCCGCCGCTGCC 36 3 0.08 46 0 0 43 0 0 GTF2IRD1 9569 mdanderson.org 37 7 73938405 73938405 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_001199207 exon8 c.G1107T p.K369N AGAGAAGTGGGAC 40 3 0.08 47 0 0 41 0 0.00 FAM200A 221786 mdanderson.org 37 7 99144733 99144733 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_145111 exon2 c.C1298A p.T433N TTAAAAGTTTGAG 27 3 0.11 43 0 0 16 0 0.00 MLL5 55904 mdanderson.org 37 7 104746451 104746451 + Splice_Site SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_018682 exon18 c.2596+1G>T . TTCCAGGTAGAAT 81 4 0.05 99 0 0 2 0 0.00 FAM86B1 85002 broad.mit.edu 37 8 12042851 12042851 + Missense_Mutation SNP C C G rs200915866 byfrequency TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . FAM86B1 . . . . CTCGGGCACCATG 13 5 0.38 9 0 0 7 3 0 0.00 ADAM9 8754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 38871495 38871495 + Missense_Mutation SNP C C G novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_003816 exon4 c.C266G p.P89R TTTTGCCTGAAGA 90 15 0.17 60 0 0 8 1 0.13 SBF1P1 100133234 hgsc.bcm.edu;ucsc.edu 37 8 56362215 56362215 + RNA SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . TGGTGGCCATGCC 97 14 0.14 48 0 0 1 0 0.00 NSMAF 8439 mdanderson.org 37 8 59571855 59571855 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e NSMAF_ENST00000427130,NS,carcinoma,-1,2 NSMAF_ENST00000427130 NM_001144772 exon1 c.C51A p.I17I CTGCCGGATAGCT 32 3 0.09 12 0 0 -1 2 2 0 0.00 LRRCC1 85444 broad.mit.edu 37 8 86019547 86019547 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e LRRCC1,colon,carcinoma,0,2 LRRCC1 NM_033402 exon1 c.C17T p.A6V CGGCGGCGGTGGT 123 6 0.05 95 0 0 212 2 1 0 0.00 SLC52A2 79581 mdanderson.org 37 8 145584287 145584287 + Missense_Mutation SNP G G T rs145502954 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_024531 exon4 c.G1039T p.V347L CTGGGCGTGTTCT 18 2 0.11 19 0 0 326 0 0.00 INSL6 11172 mdanderson.org 37 9 5185598 5185598 + Missense_Mutation SNP G G T rs142813719 bycluster;byfrequency;alternate_allele TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e INSL6,NS,carcinoma,+1,1 INSL6 NM_007179 exon1 c.C5A p.P2Q AGCCGCGGCATCC 46 3 0.07 38 1 0.0263157895 1 1 0 0 NFX1 4799 bcgsc.ca;mdanderson.org 37 9 33307243 33307243 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . NFX1 NM_147134 exon5 c.G1322T p.G441V GCTGTGGTGAGGT 89 5 0.06 75 0 0 85 10 0 0.00 GNAQ 2776 ucsc.edu;mdanderson.org 37 9 80537095 80537095 + Nonsense_Mutation SNP G G T rs200106152 by1000genomes TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . GNAQ NM_002072 exon2 c.C303A p.Y101X ATACTTGTATGGG 48 5 0.10 59 1 0.0169491525 384 2 0 0.00 GAS1 2619 mdanderson.org 37 9 89561083 89561083 + Silent SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_002048 exon1 c.C612A p.R204R GACGGTGCGGCAT 30 3 0.10 30 0 0 11 0 0.00 SARDH 1757 ucsc.edu;bcgsc.ca 37 9 136594903 136594903 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e SARDH,NS,carcinoma,-1,1 SARDH NM_007101 exon6 c.G899A p.R300H TCGATGCGCTCGG 20 4 0.20 29 0 0 112 1 4 0 0.00 ZNF41 7592 mdanderson.org 37 X 47308136 47308136 + Missense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_007130 exon5 c.C1033A p.H345N TTTGATGTGTAAT 42 3 0.07 20 0 0 1 0 0.00 HCFC1 3054 mdanderson.org 37 X 153217373 153217373 + Missense_Mutation SNP C C T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . NM_005334 exon20 c.G5179A p.A1727T CAATGGCTGGGTC 39 3 0.08 28 0 0 41 0 0.00 SYNM 23336 hgsc.bcm.edu;mdanderson.org 37 15 99666940 99666940 + Nonsense_Mutation SNP G G T novel TCGA-SN-A84X-01A-11D-A435-10 TCGA-SN-A84X-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7d0b2beb-3dce-4db2-a954-9c296657443b 31d3449d-0532-4ab1-95ab-131b0431c63e . . . . . . TTGGAAGGAGAAA 68 5 0.07 85 0 0 0 0