Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV LRRC47 57470 mdanderson.org 37 1 3712537 3712537 + Silent SNP A A G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_020710 exon1 c.T504C p.F168F GGCGGGAAAGGAG 29 4 0.14 42 2 0.0476190476 76 0 0.00 EPB41 2035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 29359661 29359661 + Silent SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001166006 exon9 c.C1269T p.Y423Y GGTTTACAAAGAT 97 36 0.37 137 0 0 55 23 0.42 HIVEP3 59269 mdanderson.org 37 1 42049570 42049570 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_024503 exon4 c.C899A p.P300Q GGTCTTGGGGAGA 48 3 0.06 65 0 0 0 0 GFI1 2672 mdanderson.org 37 1 92946383 92946383 + Silent SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001127215 exon4 c.A561G p.A187A GGCCCCTGCGCTG 16 2 0.13 11 0 0 0 0 EDEM3 80267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 184706178 184706178 + Missense_Mutation SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_025191 exon4 c.A326G p.D109G AAAGAATCAATCA 305 95 0.31 355 0 0 21 7 0.33 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186151356 186151356 + Missense_Mutation SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_031935 exon105 c.G16351A p.G5451R ACCTTTGGAAGTT 233 63 0.27 229 0 0 44 7 0.16 KIF21B 23046 ucsc.edu 37 1 200974451 200974451 + Nonsense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . KIF21B NM_017596 exon5 c.C717A p.C239X CTGGGTGCACATG 28 4 0.14 27 0 0 208 6 0 0.00 KISS1 3814 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 204159651 204159651 + Silent SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002256 exon3 c.G378A p.A126A TGGTGCCGCCTCC 62 4 0.06 74 0 0 6 0 0.00 SLC30A1 7779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 211751852 211751852 + Silent SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_021194 exon1 c.C103T p.L35L TCGCCAGCGACGA 53 17 0.32 57 0 0 27 10 0.37 CHST3 9469 mdanderson.org 37 10 73768166 73768166 + Silent SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_004273 exon3 c.C1377T p.A459A GGACGCCGCCGCC 31 3 0.10 55 0 0 5 0 0.00 SEC24C 9632 broad.mit.edu;mdanderson.org 37 10 75519799 75519799 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . SEC24C NM_004922 exon6 c.G505T p.A169S GCTTCAGCCTCAG 47 3 0.06 94 0 0 86 119 0 0.00 FFAR4 338557 mdanderson.org 37 10 95326725 95326725 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b O3FAR1,NS,carcinoma,+1,1 O3FAR1 NM_001195755 exon1 c.G248T p.C83F TCTTCTGCGCGGA 43 3 0.07 79 0 0 1 1 1 0 0.00 C10orf129 142827 mdanderson.org 37 10 96988497 96988497 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_207321 exon11 c.G1399T p.G467C TGGTCTGGTAGAG 46 3 0.07 82 0 0 2 0 0.00 PDCD11 22984 mdanderson.org 37 10 105160234 105160234 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b PDCD11,NS,carcinoma,0,1 PDCD11 NM_014976 exon3 c.G183T p.K61N CGAAAAGAGAGAA 39 3 0.08 86 0 0 0 1 46 0 0.00 GPR123 84435 mdanderson.org 37 10 134912177 134912177 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001083909 exon4 c.G165T p.T55T GCACACGCTCCTG 33 3 0.09 44 0 0 3 0 0.00 PHRF1 57661 mdanderson.org 37 11 607812 607812 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_020901 exon14 c.G2353T p.A785S AACATGGCACATT 59 4 0.07 75 0 0 78 0 0.00 ATG2A 23130 mdanderson.org 37 11 64679873 64679873 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_015104 exon7 c.G848A p.G283D AGGGAGCCCAGCT 20 3 0.15 62 0 0 27 0 0.00 MAP3K11 4296 mdanderson.org 37 11 65367071 65367071 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002419 exon9 c.C2000A p.P667Q CGTCCTGGGCCTC 20 2 0.10 28 0 0 17 0 0.00 RBM14 10432 mdanderson.org 37 11 66392959 66392959 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_006328 exon2 c.G1612T p.A538S GCTGCTGCCTCCT 47 3 0.06 69 1 0.0144927536 173 0 0.00 RBM4B 83759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66436560 66436560 + Silent SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_031492 exon3 c.C615T p.Y205Y TTCCCCGTAGCCC 78 34 0.44 164 0 0 43 26 0.60 DLG2 1740 mdanderson.org 37 11 84996380 84996380 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001142699 exon4 c.C70A p.L24I AATTTAGCAATGT 50 4 0.08 92 0 0 2 0 0.00 DDX25 29118 mdanderson.org 37 11 125787112 125787112 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_013264 exon9 c.G1004T p.S335I ATGGCAGCATCAC 41 3 0.07 61 0 0 7 0 0.00 UTP20 27340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 101763603 101763603 + Silent SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b UTP20,NS,carcinoma,0,1 UTP20 NM_014503 exon49 c.G6489A p.L2163L TCTGCTGAAGGAC 95 6 0.06 91 0 0 0 1 51 5 0.10 PSMB11 122706 mdanderson.org 37 14 23511880 23511880 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001099780 exon1 c.C446T p.A149V CCACTGCCCTCTG 37 3 0.08 52 0 0 0 0 MAP2K5 5607 mdanderson.org 37 15 67835784 67835784 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002757 exon1 c.G111T p.P37P CGGGCCGCAGTTA 55 3 0.05 91 0 0 44 0 0.00 NEIL1 79661 ucsc.edu 37 15 75646087 75646087 + Silent SNP A A G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . NEIL1 NM_001256552 exon6 c.A984G p.K328K GGGCAAAGGCTAC 85 1 0.01 85 0 0 36 20 9 0.45 ADAMTS17 170691 mdanderson.org 37 15 100821452 100821452 + Silent SNP G G T rs143055688 bycluster;by1000genomes;alternate_allele TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_139057 exon4 c.C771A p.I257I GGTCAGGATGAAC 24 3 0.13 21 0 0 9 0 0.00 MRPS34 65993 mdanderson.org 37 16 1822889 1822889 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_023936 exon1 c.C232A p.R78S CCAGGCGGCCCAG 11 2 0.18 11 0 0 104 0 0.00 PKD1 5310 mdanderson.org 37 16 2165409 2165409 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001009944 exon10 c.C2067A p.S689S GGGAACGGAGAAG 36 3 0.08 53 0 0 90 0 0.00 SRRM2 23524 broad.mit.edu 37 16 2817298 2817298 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . SRRM2 NM_016333 exon11 c.G6769T p.A2257S AACCTGGCTGACT 70 6 0.09 64 2 0.03125 263 858 50 0.06 ABCC6P1 0 broad.mit.edu 37 16 18597596 18597596 + RNA DEL A A - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CGTATCAAAAAAA 8 2 0.25 8 0 0 0 0 . 0 bcgsc.ca 37 16 33408500 33408500 + RNA DEL C C - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . GGAAGTCCCACCT 82 16 0.20 84 0 0 1 0 0.00 OR1D5 8386 broad.mit.edu 37 17 2966569 2966569 + Silent SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . OR1D5 NM_014566 exon1 c.C333T p.D111D GAGGTTGTCCAGG 354 25 0.07 394 0 0 33 1 0 0.00 OR1D4 653166 broad.mit.edu;bcgsc.ca 37 17 3144302 3144302 + RNA SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CCTGGACAACCTC 290 72 0.25 343 0 0 0 0 MYH10 4628 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 8404192 8404193 + Frame_Shift_Del DEL GT GT - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 GT GT Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . MYH10 NM_001256012 exon29 c.3696_3697del p.1232_1233del TGTTGCGTGTCTT 80 27 0.34 68 0 0 148 336 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 176 10 0.06 262 18 0.0687022901 84 44 0.52 MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 27441062 27441063 + Frame_Shift_Del DEL CA CA - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . MYO18A NM_078471 exon15 c.2565_2566del p.855_856del AGCAGCCACAGAG 53 18 0.34 75 0 0 217 30 0 0.00 ABHD15 116236 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 27893554 27893554 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_198147 exon1 c.G431A p.C144Y CGAACACAAGGTC 72 21 0.29 52 0 0 18 3 0.17 PTRF 284119 mdanderson.org 37 17 40556822 40556822 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_012232 exon2 c.C1056A p.G352G CTCCGCGCCGCCC 61 3 0.05 67 0 0 255 1 0.00 . 0 broad.mit.edu 37 17 45131453 45131453 + RNA SNP G G C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CATTGTGAGATAC 192 5 0.03 253 0 0 19 0 0.00 C17orf64 124773 mdanderson.org 37 17 58504167 58504167 + Missense_Mutation SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_181707 exon4 c.G418A p.A140T CAGCCGGCCAAGT 48 3 0.06 30 0 0 0 0 C17orf70 80233 broad.mit.edu;mdanderson.org 37 17 79517782 79517782 + Silent SNP A A G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . C17orf70 NM_025161 exon3 c.T738C p.P246P GCCATCAGGGAGA 51 3 0.06 71 0 0 79 122 0 0.00 EMILIN2 84034 mdanderson.org 37 18 2891184 2891184 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_032048 exon4 c.G1059T p.Q353H CCAGCAGCAGTGT 43 3 0.07 62 1 0.0161290323 22 0 0.00 ZFR2 23217 broad.mit.edu 37 19 3827569 3827569 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . ZFR2 NM_015174 exon6 c.C935A p.P312Q CCGCGCGGGCTCC 171 4 0.02 176 0 0 63 1 0 0.00 COL5A3 50509 broad.mit.edu 37 19 10097403 10097403 + Missense_Mutation SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . COL5A3 NM_015719 exon28 c.A2177G p.E726G CCTTTCTCCCCCT 152 13 0.09 173 7 0.0404624277 243 43 0 0.00 ZNF653 115950 mdanderson.org 37 19 11616497 11616497 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_138783 exon1 c.C105A p.G35G CGGCCGGCCCCGC 10 3 0.30 11 0 0 6 0 0.00 DDX49 54555 mdanderson.org 37 19 19035692 19035692 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_019070 exon9 c.G931T p.G311C TCCAGGGGCCTGG 27 3 0.11 41 0 0 157 0 0.00 SPTBN4 57731 mdanderson.org 37 19 41009747 41009747 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_020971 exon12 c.G1373T p.G458V ACTTTGGGTATGA 42 3 0.07 56 0 0 3 0 0.00 KLC3 147700 mdanderson.org 37 19 45849859 45849859 + Missense_Mutation SNP C C T rs372402110 TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_177417 exon3 c.C316T p.R106C CGGCTGCGCTCGC 20 3 0.15 30 0 0 5 0 0.00 NOSIP 51070 ucsc.edu 37 19 50060501 50060501 + Nonsense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b NOSIP,NS,carcinoma,0,1 NOSIP NM_015953 exon6 c.C264A p.Y88X CTTCTCGTAGGCC 35 4 0.11 46 0 0 28 1 263 0 0.00 POLD1 5424 mdanderson.org 37 19 50910291 50910291 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002691 exon13 c.G1546T p.A516S AAGGATGCCTACC 46 3 0.07 46 0 0 73 0 0.00 U2AF2 11338 mdanderson.org 37 19 56180496 56180496 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001012478 exon10 c.G993T p.L331L GCTGCTGGTCCAG 49 3 0.06 91 0 0 610 0 0.00 NBAS 51594 broad.mit.edu 37 2 15359012 15359012 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b NBAS,NS,carcinoma,-1,1 NBAS NM_015909 exon48 c.G6317A p.R2106H TGAATGCGGGGCC 202 4 0.02 259 0 0 246 1 103 0 0.00 APOB 338 broad.mit.edu 37 2 21224911 21224911 + Silent SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . APOB NM_000384 exon29 c.A13383G p.K4461K TTTCCCTTTTCCA 148 3 0.02 165 1 0.0060606061 761 16 0 0.00 AGBL5 60509 mdanderson.org 37 2 27276346 27276346 + Nonsense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001035507 exon3 c.C292T p.Q98X AACAAGCAGAGCA 84 5 0.06 84 0 0 138 0 0.00 SH2D6 284948 hgsc.bcm.edu;bcgsc.ca 37 2 85662140 85662149 + Frame_Shift_Del DEL CCCCACCCCA CCCCACCCCA - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 CCCCACCCCA CCCCACCCCA Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . SH2D6 NM_198482 exon1 c.61_70del p.21_24del GCCCACCCCCACC 277 40 0.14 354 0 0 15 0 0 COX5B 1329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 98264520 98264520 + Silent SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001862 exon4 c.C339T p.C113C GCGATGCCCCCGC 277 72 0.26 330 0 0 624 221 0.35 VWA3B 200403 mdanderson.org 37 2 98914394 98914394 + Missense_Mutation SNP G G T rs146321928 bycluster;by1000genomes;alternate_allele TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_144992 exon24 c.G3182T p.R1061L TGAGCCGCACCCA 53 3 0.06 55 0 0 0 0 . 0 bcgsc.ca 37 2 130987132 130987132 + RNA SNP C C T rs77736556 bycluster;byfrequency TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . AAAGGCCGTGCCT 62 9 0.15 39 0 0 1 0 0.00 MCM6 4175 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 136633830 136633830 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_005915 exon1 c.G106A p.E36K CTTACTCCTCCAA 35 12 0.34 47 0 0 111 35 0.32 MIR548N 100302152 mdanderson.org 37 2 179367197 179367197 + RNA SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . AAAAAAGTTATCT 49 3 0.06 64 0 0 0 0 TMEM169 92691 broad.mit.edu 37 2 216965047 216965047 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . TMEM169 NM_001142310 exon4 c.G676T p.G226C TCCCTCGGCCTCT 136 4 0.03 167 0 0 46 6 0 0.00 ESPNL 339768 mdanderson.org 37 2 239009324 239009324 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_194312 exon1 c.G264T p.W88C GTGCTGGCTGGTC 16 2 0.13 14 0 0 0 0 BCL2L1 598 broad.mit.edu 37 20 30309595 30309595 + Missense_Mutation SNP A A G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . BCL2L1 NM_138578 exon2 c.T427C p.F143L AGAAAAAGGCCAC 220 3 0.01 240 1 0.0041666667 23 412 1 0.00 HELZ2 85441 mdanderson.org 37 20 62198924 62198924 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001037335 exon7 c.C1787A p.P596H GCCTCGGGGTGGC 46 3 0.07 43 0 0 18 0 0.00 MICAL3 57553 broad.mit.edu 37 22 18314645 18314645 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . MICAL3 NM_015241 exon21 c.C3030A p.D1010E CTCCTCGTCATAG 86 3 0.03 144 0 0 53 4 0 0.00 ZBTB11 27107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 101371663 101371663 + Missense_Mutation SNP T T G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_014415 exon9 c.A2429C p.Y810S TGGGAATACCAAT 69 21 0.30 91 0 0 47 14 0.30 GATA2 2624 mdanderson.org 37 3 128200738 128200738 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_032638 exon5 c.C1067A p.T356N GTGGTGGTTGTCG 101 5 0.05 113 0 0 323 0 0.00 PLXND1 23129 mdanderson.org 37 3 129275264 129275264 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b PLXND1,caecum,carcinoma,-1,1 PLXND1 NM_015103 exon36 c.C5669A p.A1890D AGCGCGGCCATGA 104 5 0.05 103 0 0 -1 1 579 0 0.00 SI 6476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 164777693 164777693 + Silent SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001041 exon10 c.A1143G p.P381P TACAAATGGTATG 93 31 0.33 82 0 0 14 4 0.29 SDHAP2 0 broad.mit.edu 37 3 195398365 195398365 + RNA SNP T T G rs202222949 bycluster TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CCAGTTTCTTTCT 6 3 0.50 8 0 0 0 0 ZNF732 654254 hgsc.bcm.edu 37 4 265103 265103 + Missense_Mutation SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b ZNF732_ENST00000419098,NS,carcinoma,0,1 ZNF732_ENST00000419098 NM_001137608 exon3 c.A1540G p.T514A GGTATGTGGACCA 100 4 0.04 115 1 0.0086956522 0 1 3 0 0.00 PHOX2B 8929 mdanderson.org 37 4 41747890 41747890 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_003924 exon3 c.C879A p.S293R TAGGACGCTGGCG 47 3 0.06 69 0 0 0 0 CENPE 1062 mdanderson.org 37 4 104070563 104070563 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001813 exon27 c.C3399A p.S1133R TTGCTGGCTCTTA 33 3 0.09 62 1 0.0161290323 12 0 0.00 TRPC3 7222 broad.mit.edu;bcgsc.ca 37 4 122853966 122853966 + Missense_Mutation SNP G G T rs199887234 alternate_allele TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . TRPC3 NM_001130698 exon2 c.C447A p.N149K CAGCGCGTTCTGG 104 6 0.06 160 0 0 201 2 0 0.00 ARHGAP10 79658 broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 148802993 148802993 + Missense_Mutation SNP A A G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . ARHGAP10 NM_024605 exon10 c.A944G p.D315G AGGGGGACGGAGA 56 4 0.07 82 0 0 92 36 0 0.00 MOCS2 4338 mdanderson.org 37 5 52404454 52404454 + Missense_Mutation SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_176806 exon2 c.C38T p.A13V CTTTTTGCAAAAT 45 3 0.07 79 0 0 94 0 0.00 TTC37 9652 mdanderson.org 37 5 94803686 94803686 + Silent SNP G G T rs372395062 alternate_allele TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_014639 exon42 c.C4504A p.R1502R GACGCCGTGTCTC 41 3 0.07 79 0 0 152 0 0.00 CAMK4 814 mdanderson.org 37 5 110730442 110730442 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001744 exon5 c.G421T p.A141S CGAGATGCTGCAG 43 3 0.07 87 1 0.0114942529 17 0 0.00 ADAM19 8728 hgsc.bcm.edu 37 5 156915307 156915307 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_033274 exon21 c.C2516A p.P839Q GGAATTGGCCGGC 88 4 0.05 137 0 0 32 0 0.00 ABCF1 23 mdanderson.org 37 6 30552321 30552321 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001025091 exon14 c.C1369T p.R457C GGCTGGCGCATGC 48 3 0.06 45 0 0 139 0 0.00 NELFE 7936 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31922436 31922437 + Frame_Shift_Del DEL TC TC - novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 TC TC Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002904 exon7 c.638_639del p.213_213del TCTCTGTCTCTGT 133 23 0.17 130 0 0 399 0 0.00 COL12A1 1303 mdanderson.org 37 6 75798829 75798829 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_004370 exon64 c.C9003A p.G3001G TGGGGGGCCAGGC 38 3 0.08 49 0 0 242 1 0.00 FERD3L 222894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 19184670 19184670 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b FERD3L,NS,carcinoma,0,1 FERD3L NM_152898 exon1 c.G316A p.A106T TGTTGGCGGCCTG 104 37 0.36 108 0 0 0 1 0 0 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CCGGGGTCCTTGA 113 3 0.03 110 1 0.0090909091 0 0 . 30816 ucsc.edu;bcgsc.ca 37 7 92098776 92098776 + Missense_Mutation SNP C C T rs10266695 bycluster;byfrequency;byhapmap;by1000genomes TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . ACATAACTGTATA 13 4 0.31 72 1 0.0138888889 0 0 MEPCE 56257 mdanderson.org 37 7 100028001 100028001 + Silent SNP C C G novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_019606 exon1 c.C360G p.G120G AGGGGGCGGGACA 15 3 0.20 10 0 0 8 0 0.00 PCOLCE 5118 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 100203305 100203305 + Missense_Mutation SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_002593 exon5 c.G595A p.A199T GTCATCGCGCTGA 204 58 0.28 237 0 0 1555 459 0.30 FOXP2 93986 mdanderson.org 37 7 114270000 114270000 + Silent SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b FOXP2,NS,carcinoma,0,6 FOXP2 NM_148898 exon6 c.G612A p.Q204Q ACAACAGCAGCAG 18 2 0.11 28 0 0 0 6 42 1 0.02 REPIN1 29803 mdanderson.org 37 7 150068974 150068974 + Missense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001099695 exon3 c.G815T p.R272L GGCCCCGGCCCAG 36 3 0.08 37 0 0 91 0 0.00 ZHX2 22882 broad.mit.edu 37 8 123966158 123966158 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . ZHX2 NM_014943 exon3 c.C2408T p.A803V AGGATGCGATCTC 165 5 0.03 148 0 0 106 62 0 0.00 PRSS3 5646 ucsc.edu 37 9 33798037 33798037 + Silent SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b PRSS3_ENST00000361005,NS,carcinoma,0,3 PRSS3 NM_007343 exon3 c.T582C p.T194T TGGCACTGAGTGC 100 3 0.03 125 0 0 79 3 45 30 0.67 rescued with RNA-seq . 441420 bcgsc.ca 37 9 45376198 45376198 + RNA SNP G G A rs146422224 TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . CGGCTCGCGGACC 43 7 0.16 38 0 0 0 0 LOC100132352 0 bcgsc.ca 37 9 68728891 68728891 + RNA SNP C C T rs68081132 bycluster;byfrequency TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . AGAAACCCAGCTT 70 8 0.11 103 3 0.0291262136 226 3 0.01 SPTAN1 6709 mdanderson.org 37 9 131337577 131337577 + Nonsense_Mutation SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_003127 exon5 c.G604T p.E202X GCTCATGAAGAAA 45 4 0.09 64 0 0 67 0 0.00 RNR2 0 broad.mit.edu 37 MT 1868 1868 + RNA SNP G G A novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . . . . . TAACTAGAAATAA 4 4 1.00 14 0 0 0 0 FAM9A 171482 mdanderson.org 37 X 8763195 8763195 + Missense_Mutation SNP C C T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_174951 exon7 c.G755A p.G252E CCTCCTCCTTCTT 36 3 0.08 18 0 0 0 0 SPIN2A 54466 broad.mit.edu 37 X 57162583 57162583 + Missense_Mutation SNP T T C novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . SPIN2A NM_019003 exon2 c.A448G p.M150V AGACCATCCCCCT 667 7 0.01 389 1 0.0025706941 7 0 0 ARHGAP4 393 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 153174596 153174596 + Silent SNP G G T novel TCGA-SN-A84W-01A-11D-A435-10 TCGA-SN-A84W-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 7cc41d24-e0f3-46ee-a8a3-52a28666742b b4c25462-07cf-4f0c-a865-a6dcc36a802b . . NM_001164741 exon22 c.C2655A p.A885A TCCCATGGCCTCA 61 5 0.08 40 0 0 70 0 0.00