Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV RUNX3 864 mdanderson.org 37 1 25228682 25228682 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001031680 exon6 c.C1221A p.S407R GCTGTGGCTGCCG 42 3 0.07 40 0 0 43 0 0.00 ANKRD20A12P 0 broad.mit.edu 37 1 142699482 142699483 + RNA INS - - TG novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . TAATTATTATGTT 18 2 0.11 14 0 0 0 0 IVL 3713 broad.mit.edu 37 1 152883011 152883011 + Silent SNP T T A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . IVL NM_005547 exon2 c.T738A p.S246S GCTCTCTGAGCAG 76 5 0.07 65 0 0 100 0 0 THBS3 7059 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155172077 155172077 + Missense_Mutation SNP A A G novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . THBS3 NM_007112 exon9 c.T1073C p.I358T TAGTCAATGCCCA 117 18 0.15 58 1 0.0172413793 70 18 4 0.22 GPATCH4 54865 hgsc.bcm.edu 37 1 156568272 156568272 + Silent SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_015590 exon3 c.C109A p.R37R CCTTCCGGCCGAG 92 4 0.04 83 0 0 212 0 0.00 SMG7 9887 broad.mit.edu 37 1 183514071 183514071 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 SMG7,colon,carcinoma,0,1 SMG7 NM_173156 exon16 c.C1994T p.P665L GGTTTCCGCCCCC 129 3 0.02 117 0 0 165 1 210 1 0.00 C1orf65 164127 mdanderson.org 37 1 223566845 223566845 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_152610 exon1 c.C28T p.P10S TCCCAGCCGCCCT 47 3 0.06 34 0 0 0 0 SDE2 163859 broad.mit.edu 37 1 226186983 226186983 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_152608 exon1 c.C31A p.R11S GGCCGCGAATCCA 107 4 0.04 75 0 0 32 0 0.00 DNAJC12 56521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 69571358 69571358 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_021800 exon3 c.G221A p.R74H TCATAGCGGGCTC 173 19 0.11 140 0 0 5 0 0.00 VENTX 27287 mdanderson.org 37 10 135051634 135051634 + Silent SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_014468 exon1 c.G216T p.L72L AAATCTGCCTGCG 44 3 0.07 50 0 0 439 2 0.00 CHID1 66005 ucsc.edu;bcgsc.ca;mdanderson.org 37 11 903029 903029 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . CHID1 NM_001142676 exon4 c.G269A p.R90H TAGCTGCGATGCT 52 5 0.10 40 0 0 29 227 0 0.00 NAT10 55226 broad.mit.edu 37 11 34149080 34149080 + Missense_Mutation SNP T T C novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . NAT10 NM_024662 exon12 c.T1178C p.I393T CCGCCATCCCCCT 174 3 0.02 135 3 0.0222222222 78 92 0 0.00 RAPSN 5913 mdanderson.org 37 11 47469559 47469559 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_005055 exon2 c.G336A p.L112L ACCAGGCAGCCCA 55 3 0.05 43 0 0 0 0 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . GGTGCAGCATGCC 40 7 0.18 22 0 0 0 0 SLC22A24 283238 hgsc.bcm.edu 37 11 62848443 62848443 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 SLC22A24_ENST00000417740,NS,carcinoma,-2,1 SLC22A24_ENST00000417740 NM_001136506 exon9 c.C1547A p.P516Q GTTTCTGGAAGGA 78 4 0.05 90 0 0 -2 1 0 0 TBX10 347853 mdanderson.org 37 11 67399845 67399845 + Missense_Mutation SNP C C T rs146079895 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_005995 exon7 c.G812A p.R271Q TGACTCCGGGCTG 38 3 0.08 35 0 0 0 2 0 0.00 MLL2 8085 broad.mit.edu 37 12 49435162 49435162 + Missense_Mutation SNP T T G novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . MLL2 NM_003482 exon31 c.A6391C p.T2131P CGGGGGTAGTGGG 82 16 0.20 50 12 0.24 1173 25 3 0.12 KRT79 338785 mdanderson.org 37 12 53227722 53227722 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_175834 exon1 c.C323A p.A108D GGACAAGCAGGCC 108 5 0.05 69 0 0 0 0 CKAP4 10970 broad.mit.edu;mdanderson.org 37 12 106641269 106641269 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . CKAP4 NM_006825 exon1 c.G361A p.A121T AGAAAGCGGCCGC 22 4 0.18 13 0 0 49 111 1 0.01 HECTD4 283450 mdanderson.org 37 12 112664471 112664471 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001109662 exon44 c.C6544A p.L2182I CTACTAGGTTAAG 46 3 0.07 26 0 0 33 0 0.00 SPERT 220082 broad.mit.edu;mdanderson.org 37 13 46288213 46288213 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . SPERT NM_152719 exon3 c.C1053T p.D351D GCCCGACGGCTGC 25 3 0.12 33 0 0 54 0 0 BIVM-ERCC5 0 mdanderson.org 37 13 103528227 103528227 + Missense_Mutation SNP G G T rs55843971 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 ERCC5,NS,carcinoma,-2,1 ERCC5 NM_001204425 exon23 c.G4897T p.A1633S AGACGTGCGAGGG 21 2 0.10 20 0 0 -2 1 64 0 0.00 NYNRIN 57523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24878059 24878059 + Silent SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_025081 exon4 c.G1059A p.G353G CCCGGGGCCAGCC 130 23 0.18 104 0 0 15 5 0.33 FOXA1 3169 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 38060906 38060906 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_004496 exon2 c.C1083A p.S361R CCCGGAGCTTATG 53 10 0.19 24 0 0 0 0 SEL1L 6400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 81969081 81969081 + Missense_Mutation SNP G G C novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001244984 exon6 c.C761G p.S254C TTGGGAGAGCCTT 102 12 0.12 48 0 0 25 2 0.08 . 283685 broad.mit.edu 37 15 23685749 23685751 + In_Frame_Del DEL CTC CTC - novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 CTC CTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . CATCTTCTCCTCC 19 7 0.37 16 0 0 0 0 MEF2A 4205 hgsc.bcm.edu 37 15 100211846 100211846 + Missense_Mutation SNP G G A rs75705863 bycluster TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 MEF2A_ENST00000354410,NS,carcinoma,+1,1 MEF2A_ENST00000354410 NM_005587 exon5 c.G380A p.R127Q TGATGCGGAATCA 40 4 0.10 20 0 0 1 1 5 0 0.00 NPW 283869 mdanderson.org 37 16 2070149 2070149 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001099456 exon1 c.G247A p.A83T GAACCCGCAGCCC 16 2 0.13 9 0 0 3 0 0.00 PKD1 5310 mdanderson.org 37 16 2160443 2160443 + Silent SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001009944 exon15 c.C4725A p.G1575G ATCACTGCCGGCC 51 3 0.06 51 0 0 25 0 0.00 ZNF205 7755 mdanderson.org 37 16 3169513 3169513 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 ZNF205,NS,carcinoma,0,1 ZNF205 NM_001042428 exon7 c.G852T p.E284D CAACGAGGAGGAG 20 2 0.10 33 0 0 0 1 54 0 0.00 ITPRIPL2 162073 mdanderson.org 37 16 19127279 19127279 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001034841 exon1 c.C1496T p.T499M TGTCCACGTGGCA 46 3 0.07 31 0 0 29 0 0.00 MYLPF 29895 broad.mit.edu 37 16 30389139 30389139 + Missense_Mutation SNP T T C novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . MYLPF NM_013292 exon7 c.T428C p.F143S CGGCCTTCCCCCC 172 5 0.03 142 0 0 12 2 0 0.00 RNF40 9810 ucsc.edu 37 16 30778100 30778100 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . RNF40 NM_014771 exon11 c.G1332T p.E444D CACAGAGGTCATT 41 4 0.10 29 0 0 83 130 0 0.00 . 0 broad.mit.edu 37 16 32070612 32070612 + RNA SNP A A C rs368458790 bycluster TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . TCCTGCAAGGCTT 48 9 0.19 21 0 0 0 0 GFOD2 81577 mdanderson.org 37 16 67709571 67709571 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_030819 exon3 c.G645A p.R215R GACGTGCCGGATG 30 3 0.10 23 0 0 24 0 0.00 PRMT7 54496 broad.mit.edu 37 16 68358698 68358698 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 PRMT7,colon,carcinoma,0,1 PRMT7 NM_019023 exon5 c.C245T p.A82V TGATGGCGGTCAC 188 4 0.02 153 0 0 51 1 67 1 0.01 CAMKK1 84254 ucsc.edu 37 17 3788920 3788920 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . CAMKK1 NM_032294 exon2 c.C62T p.A21V ATGGCTGCCACCC 43 4 0.09 33 0 0 70 6 0 0.00 DLG4 1742 mdanderson.org 37 17 7100103 7100103 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001365 exon11 c.G1185A p.E395E CCGCAGCTCCCCA 38 3 0.08 41 0 0 16 0 0.00 SENP3 26168 broad.mit.edu;mdanderson.org 37 17 7466636 7466636 + Silent SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . SENP3 NM_015670 exon2 c.G243A p.E81E AGAAGAGGAGGAG 94 4 0.04 75 0 0 18 124 0 0.00 RAB34 83871 hgsc.bcm.edu 37 17 27041699 27041699 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 RAB34,NS,carcinoma,0,1 RAB34 NM_001144943 exon11 c.C913A p.L305I CAGTTAGGTAGAG 74 3 0.04 80 0 0 0 1 137 0 0.00 GFAP 2670 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 42989136 42989136 + Silent SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . GFAP NM_001131019 exon5 c.C810A p.R270R CGCGTTGCGGGCA 41 4 0.10 33 0 0 88 0 0 COG1 9382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 71193472 71193472 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_018714 exon4 c.C850T p.P284S CCAGATCCAGCCC 66 22 0.33 55 0 0 80 50 0.63 KIF19 124602 mdanderson.org 37 17 72350514 72350514 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_153209 exon18 c.C2522T p.A841V ATGCTGCCAGTGA 35 3 0.09 27 0 0 3 0 0.00 UNK 85451 mdanderson.org 37 17 73808667 73808667 + Splice_Site SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001080419 exon4 c.622+1G>T . GGCAAGGTACAGG 50 3 0.06 43 0 0 0 0 MBD1 4152 mdanderson.org 37 18 47800070 47800070 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001204137 exon13 c.C1385A p.A462D GTTGGAGCCTGGG 33 3 0.09 52 0 0 106 0 0.00 ZNRF4 148066 mdanderson.org 37 19 5455516 5455516 + Missense_Mutation SNP G G T rs375127837 alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_181710 exon1 c.G14T p.R5L TCTGCCGTCCGGA 42 3 0.07 40 0 0 0 0 WDR87 83889 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 38385792 38385792 + Missense_Mutation SNP A A G novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_031951 exon4 c.T434C p.L145P ATTTGGAGGCCCG 114 10 0.09 104 0 0 2 0 0.00 CCDC155 147872 mdanderson.org 37 19 49920743 49920743 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_144688 exon20 c.C1665T p.C555C GCTCTGCTACCTC 37 3 0.08 27 0 0 10 0 0.00 BIRC6 57448 broad.mit.edu;mdanderson.org 37 2 32718725 32718725 + Nonsense_Mutation SNP C C G novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . BIRC6 NM_016252 exon45 c.C8459G p.S2820X TACTTTCAACTGA 63 6 0.10 47 0 0 838 100 24 0.24 . 0 broad.mit.edu 37 2 91887904 91887905 + RNA INS - - T rs369805878 alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . ATTTTCCATTTTT 171 12 0.07 111 3 0.027027027 0 0 FASTKD1 79675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170403079 170403079 + Silent SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_024622 exon8 c.C1350T p.N450N ACTCAGGTTATTT 348 44 0.13 266 0 0 70 11 0.16 GAD1 2571 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 171687483 171687483 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_000817 exon5 c.G328A p.E110K AACGGTGAGGAGC 121 12 0.10 87 0 0 0 0 STK11IP 114790 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 220467428 220467428 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_052902 exon7 c.G581A p.R194H CTCAGCGCCTCTT 195 14 0.07 118 0 0 64 8 0.13 FRG1B 284802 mdanderson.org 37 20 29633902 29633902 + RNA SNP C C A rs145072022 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . AGAGAACCAAATT 261 11 0.04 139 1 0.0071942446 36 0 0.00 SLC2A10 81031 ucsc.edu;bcgsc.ca 37 20 45362413 45362413 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . SLC2A10 NM_030777 exon5 c.C1566T p.G522G CTTTGGCCACAGG 37 4 0.11 53 0 0 75 28 0 0.00 LAMA5 3911 mdanderson.org 37 20 60922017 60922017 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_005560 exon7 c.C1024A p.Q342K GCTGCTGATTGAA 39 3 0.08 58 0 0 22 0 0.00 KRTAP10-4 386672 ucsc.edu 37 21 45993851 45993851 + Silent SNP C C T rs543299 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . KRTAP10-4 NM_198687 exon1 c.C216T p.C72C GACCTGCGAGCCC 33 9 0.27 13 2 0.1538461538 44 0 0 CARD10 29775 mdanderson.org 37 22 37887324 37887324 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_014550 exon20 c.C2972A p.A991D TCATGGGCGGGCA 13 2 0.15 14 0 0 94 0 0.00 PHLDB2 90102 broad.mit.edu 37 3 111603922 111603922 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . PHLDB2 NM_001134437 exon3 c.C1079T p.A360V TCCCTGCCAGTCC 158 4 0.03 102 0 0 449 10 0 0.00 TM4SF19-TCTEX1D2 0 hgsc.bcm.edu 37 3 196043134 196043134 + RNA SNP G G C novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . CAGTCGGTGACTC 59 18 0.31 44 0 0 2 0 0.00 DGKQ 1609 mdanderson.org 37 4 961070 961070 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001347 exon9 c.C1067A p.A356D TCACAGGCCTGAG 19 2 0.11 8 0 0 6 0 0.00 RUFY3 22902 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 4 71659590 71659590 + Nonsense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001037442 exon13 c.C1426T p.Q476X AGTCTGCAGCTGG 226 23 0.10 153 0 0 42 5 0.12 ATOH1 474 broad.mit.edu 37 4 94750181 94750181 + Missense_Mutation SNP C C A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 ATOH1,rectum,carcinoma,0,1 ATOH1 NM_005172 exon1 c.C104A p.P35Q CGCCGCCGCAGCC 172 4 0.02 156 1 0.0064102564 40 1 0 0 POU4F2 5458 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 147560512 147560512 + Missense_Mutation SNP A A T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 POU4F2,NS,carcinoma,0,1 POU4F2 NM_004575 exon1 c.A220T p.S74C AGCTCCAGCAGCA 75 8 0.11 70 0 0 0 1 0 0 SRP19 7905 ucsc.edu 37 5 112228215 112228215 + Silent SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . SRP19 . . . . GTTTAACGGACGA 282 2 0.01 242 0 0 12 24 16 0.67 rescued with RNA-seq IK 3550 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140032730 140032730 + Splice_Site SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 IK_ENST00000417647,NS,carcinoma,0,1 IK NM_006083 exon5 c.404+1G>A . TGAGGCGTGAGTA 34 4 0.12 30 0 0 46 1 22 2 0.09 RGS14 10636 mdanderson.org 37 5 176793307 176793307 + Missense_Mutation SNP T T C novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_006480 exon3 c.T197C p.L66P GGGCCCTGTCCTT 49 3 0.06 59 0 0 28 0 0.00 TTBK1 84630 mdanderson.org 37 6 43251731 43251731 + Missense_Mutation SNP C C T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_032538 exon14 c.C3253T p.P1085S GCTCGGCCGCAGC 33 3 0.09 36 0 0 2 0 0.00 RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG 26 4 0.15 18 1 0.0555555556 0 2 1 0 0.00 BAI3 577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 69723993 69723993 + Missense_Mutation SNP C C A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001704 exon12 c.C1993A p.Q665K GATGCACAACAGG 369 80 0.22 273 0 0 0 0 COL9A1 1297 mdanderson.org 37 6 70978539 70978539 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 COL9A1_ENST00000320755,NS,carcinoma,0,2 COL9A1_ENST00000320755 NM_001851 exon17 c.C1255A p.R419S CTGAGCGACCTGG 47 3 0.06 36 0 0 0 2 0 0 SLC22A16 85413 ucsc.edu 37 6 110752416 110752416 + Silent SNP C C T rs142454497 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . SLC22A16 NM_033125 exon7 c.G1479A p.P493P AGAGAACGGCGCC 37 4 0.11 32 0 0 81 0 0 SHPRH 257218 mdanderson.org 37 6 146248330 146248330 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_173082 exon15 c.C3223A p.L1075I CTTGAAGTGAATC 47 3 0.06 29 0 0 11 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . CCGGGGTCCTTGA 141 4 0.03 92 1 0.0108695652 0 0 CDK14 5218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 90585027 90585027 + Missense_Mutation SNP A A T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_012395 exon8 c.A788T p.K263I GAGCAAAATCCGT 99 11 0.11 59 0 0 6 0 0.00 RBM48 84060 broad.mit.edu 37 7 92164020 92164021 + Frame_Shift_Del DEL TT TT - novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_032120 exon4 c.753_754del p.251_252del AAACTCTTTGAAA 92 8 0.09 46 0 0 82 0 0.00 LAMB4 22798 mdanderson.org 37 7 107717416 107717416 + Missense_Mutation SNP G G T rs144579218 alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_007356 exon17 c.C2097A p.H699Q ATGAGCGTGGGAC 49 3 0.06 18 0 0 2 0 0.00 KCP 375616 broad.mit.edu 37 7 128548305 128548308 + RNA DEL AAGA AAGA - rs139059512 by1000genomes;alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 AAGA AAGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . KCP . . . . AGAAAGAAGAAAG 10 5 0.50 4 0 0 16 0 0 C7orf29 113763 mdanderson.org 37 7 150027654 150027654 + Missense_Mutation SNP G G A rs371078860 TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_138434 exon1 c.G161A p.R54Q TGGCCCGGCAGCT 50 3 0.06 40 0 0 29 0 0.00 XKR9 389668 mdanderson.org 37 8 71646627 71646627 + Nonsense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001011720 exon5 c.G1090T p.E364X CTAAGAGAATGTA 49 3 0.06 29 0 0 3 0 0.00 SCRIB 23513 mdanderson.org 37 8 144886905 144886905 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_182706 exon21 c.C2842T p.R948W CCTCCCGCTCCAA 27 3 0.11 25 0 0 228 0 0.00 EPPK1 83481 broad.mit.edu 37 8 144940690 144940690 + Silent SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . EPPK1 NM_031308 exon1 c.C6732T p.S2244S GTAGATGCTCATC 58 4 0.07 41 1 0.0243902439 199 103 12 0.12 OPLAH 26873 broad.mit.edu 37 8 145108284 145108284 + Missense_Mutation SNP G G T rs186909122 by1000genomes;alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . OPLAH NM_017570 exon20 c.C2699A p.A900D CGCAGGGCCTCCG 70 6 0.09 38 0 0 78 14 0 0.00 JAK2 3717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 5080316 5080316 + Missense_Mutation SNP G G T rs368219482 alternate_allele TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_004972 exon17 c.G2219T p.G740V GTTTTGGTACCAC 151 32 0.21 145 0 0 8 4 0.50 GAS1 2619 mdanderson.org 37 9 89560990 89560990 + Silent SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_002048 exon1 c.C705A p.V235V CTCCTTGACCGAC 17 3 0.18 17 0 0 13 0 0.00 LOC100132077 0 broad.mit.edu 37 9 97108463 97108464 + RNA INS - - T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . . . . . AACAATCTTTTTT 9 3 0.33 7 0 0 0 0 C5 727 hgsc.bcm.edu;mdanderson.org 37 9 123751989 123751989 + Missense_Mutation SNP G G T novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . . NM_001735 exon24 c.C3011A p.P1004H CCTTTGGGGAGGT 79 4 0.05 53 0 0 4 0 0.00 PDHA1 5160 broad.mit.edu 37 X 19369427 19369427 + Missense_Mutation SNP G G A novel TCGA-SB-A6J6-01A-11D-A435-10 TCGA-SB-A6J6-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fdfd4ff8-15a9-45b4-b360-def8726d63f1 f490534e-6bd1-4887-89fb-1eb9c49c2ca5 . PDHA1 NM_001173454 exon5 c.G434A p.G145D AGGCCGGCATCAA 429 6 0.01 265 0 0 85 171 0 0.00