Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NOL9 79707 mdanderson.org 37 1 6614471 6614471 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_024654 exon1 c.G92A p.R31H GGCCGGCGGCTGA 23 2 0.09 21 0 0 0 0 PADI6 353238 broad.mit.edu 37 1 17706676 17706676 + RNA DEL G G - novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . PADI6 . . . . TTTTGTGGGGTAT 6 2 0.33 8 0 0 51 0 0 RLF 6018 mdanderson.org 37 1 40661433 40661433 + Nonsense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_012421 exon4 c.G604T p.E202X ACGGAGGAAGGTA 43 3 0.07 55 0 0 0 0 MROH7 374977 mdanderson.org 37 1 55134566 55134566 + Silent SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001039464 exon5 c.C1345T p.L449L GATCTGCTGGAGG 51 3 0.06 44 0 0 1 0 0.00 KIF26B 55083 mdanderson.org 37 1 245861584 245861584 + Nonsense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_018012 exon13 c.C6001T p.Q2001X CGCCTGCAGCGGC 37 3 0.08 29 0 0 0 0 ZEB1 6935 mdanderson.org 37 10 31803542 31803542 + Silent SNP G G T rs149166539 alternate_allele TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001174096 exon6 c.G699T p.T233T TGTGACGCAGTCT 49 3 0.06 52 0 0 2 0 0.00 ZNF33A 7581 mdanderson.org 37 10 38343734 38343734 + Missense_Mutation SNP C C A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_006954 exon5 c.C682A p.L228I GAAACCCTCCTTG 46 3 0.07 62 0 0 7 0 0.00 FLJ31813 0 hgsc.bcm.edu 37 10 51823051 51823051 + RNA SNP T T C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . CCCCCCTACTCCC 68 21 0.31 74 0 0 0 0 PACSIN3 29763 mdanderson.org 37 11 47202203 47202203 + Missense_Mutation SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001184975 exon5 c.T250C p.F84L TGAAAAAGGCATG 16 2 0.13 18 0 0 41 0 0.00 OR4C3 256144 broad.mit.edu 37 11 48346502 48346502 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . OR4C3 NM_001004702 exon1 c.G10T p.V4F CAATTAGTTCTAT 93 4 0.04 101 0 0 75 0 0 CD248 57124 mdanderson.org 37 11 66083957 66083957 + Missense_Mutation SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_020404 exon1 c.C542T p.T181M AAGGGCGTGGTAT 11 2 0.18 19 0 0 17 0 0.00 FAM86C2P 0 broad.mit.edu 37 11 67560590 67560590 + RNA SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . TTTATCCGCTTTC 75 6 0.08 98 1 0.0102040816 3 0 0.00 HEPACAM 220296 mdanderson.org 37 11 124805885 124805885 + Silent SNP T T C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_152722 exon1 c.A18G p.G6G CAGGGCTCCCCTT 52 3 0.06 81 0 0 0 0 NCAPD3 23310 bcgsc.ca 37 11 134027845 134027845 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . NCAPD3 NM_015261 exon31 c.C4152T p.S1384S TTCTGGGCTTCCA 45 4 0.09 74 0 0 141 28 0 0.00 FGF6 2251 mdanderson.org 37 12 4554548 4554548 + Silent SNP G G T rs7358740 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e FGF6,colon,carcinoma,-2,2 FGF6 NM_020996 exon1 c.C189A p.A63A TAGCCCGGCGCGA 67 3 0.04 46 0 0 0 -2 2 0 0 RBP5 0 broad.mit.edu 37 12 7281645 7281674 + RNA DEL TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC - novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 TTCCTGAGGAAGGAACCTGGAGCAGGATCC TTCCTGAGGAAGGAACCTGGAGCAGGATCC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . RBP5 . . . . TGGCTTTTCCTGA 13 4 0.31 6 0 0 20 6 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu 37 12 25378562 25378562 + Missense_Mutation SNP C C G rs121913527 alternate_allele TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e KRAS_ENST00000256078,colon,carcinoma,+1,137 KRAS_ENST00000256078 NM_004985 exon4 c.G436C p.A146P TCTTTGCTGATGT 118 9 0.08 54 1 0.0185185185 1 137 34 3 0.09 APAF1 317 broad.mit.edu 37 12 99052954 99052954 + Silent SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . APAF1 NM_181868 exon5 c.A543G p.G181G AGGGGGAGTGCAT 153 4 0.03 121 0 0 111 1 0 0.00 PABPC3 5042 bcgsc.ca 37 13 25671027 25671027 + Missense_Mutation SNP A A G rs78826513 bycluster;byfrequency TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . PABPC3 NM_030979 exon1 c.A691G p.K231E AAATCCAAAGGAT 74 9 0.12 109 1 0.0091743119 129 29 0 0.00 NKX2-1 7080 mdanderson.org 37 14 36988207 36988207 + Missense_Mutation SNP T T G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001079668 exon2 c.A446C p.D149A CGCGGGTCTGGGT 17 7 0.41 13 3 0.2307692308 0 0 INO80 54617 broad.mit.edu 37 15 41277616 41277616 + Missense_Mutation SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e INOC1,NS,carcinoma,0,2 INO80 NM_017553 exon32 c.C3841T p.R1281W CCTGCCGCAGCCT 131 5 0.04 139 1 0.0071942446 122 2 14 0 0.00 VPS13C 54832 hgsc.bcm.edu;mdanderson.org 37 15 62199517 62199517 + Silent SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e VPS13C,NS,carcinoma,-1,1 VPS13C NM_020821 exon66 c.C9051A p.T3017T TTTTCTGGTACCA 119 6 0.05 122 0 0 -1 1 5 0 0.00 ZNF213 7760 mdanderson.org 37 16 3191015 3191015 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001134655 exon6 c.G1047T p.E349D CCCTGAGTGCGAC 32 3 0.09 28 0 0 1 0 0.00 SNX29P2 440352 hgsc.bcm.edu 37 16 29375984 29375984 + RNA SNP T T C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . TTTTTTTCTTTTT 115 5 0.04 128 0 0 0 0 ITGAL 3683 mdanderson.org 37 16 30531261 30531261 + Silent SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_002209 exon30 c.G3312T p.L1104L GCTGCTGCTGCTC 24 3 0.13 29 0 0 15 0 0.00 TEPP 374739 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 58011892 58011892 + Missense_Mutation SNP A A C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_199046 exon2 c.A337C p.K113Q ACCGTCAAGGCCT 72 5 0.07 95 0 0 0 0 C16orf70 80262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67165195 67165195 + Missense_Mutation SNP G G C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_025187 exon4 c.G238C p.E80Q GTGATCGAAGTAT 182 20 0.11 215 0 0 10 0 0.00 ST3GAL2 6483 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 70415679 70415679 + Missense_Mutation SNP C C G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_006927 exon7 c.G966C p.K322N GCCAGTCTTCCGG 141 23 0.16 126 0 0 26 5 0.19 LOC283922 0 broad.mit.edu 37 16 74372644 74372644 + RNA SNP A A G rs2549260 bycluster TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . CTTGTCAGGGGGA 81 4 0.05 114 0 0 5 0 0.00 CDYL2 124359 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 80718479 80718479 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_152342 exon2 c.G572A p.G191D CATTCACCCATAT 115 7 0.06 121 0 0 1 0 0.00 NLRP1 22861 mdanderson.org 37 17 5440172 5440172 + Silent SNP G G T rs199748129 alternate_allele TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e NLRP1,colon,carcinoma,0,1 NLRP1 NM_014922 exon8 c.C2959A p.R987R CTTACCGTCTGCT 38 3 0.08 67 0 0 0 1 2 0 0.00 ALOX12B 242 mdanderson.org 37 17 7984268 7984268 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001139 exon4 c.C461A p.P154H TAGCTGGGCAGGC 42 3 0.07 60 0 0 0 0 TBC1D29 26083 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28887161 28887161 + Silent SNP T T C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . TBC1D29 NM_015594 exon2 c.T39C p.G13G ACAGGGTTCCTCA 206 47 0.23 237 1 0.0042194093 19 0 0 LRRC37BP1 0 broad.mit.edu 37 17 28960991 28960991 + RNA DEL C C - rs10561703 alternate_allele TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . TTTTTTCTTTTTT 88 14 0.16 59 0 0 2 0 0.00 LRRC37A4P 0 broad.mit.edu 37 17 43590674 43590675 + RNA INS - - A rs373528477 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . AAAAAACAAAAAA 88 20 0.23 58 11 0.1896551724 0 0 MAP3K3 4215 mdanderson.org 37 17 61729923 61729923 + Missense_Mutation SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_203351 exon5 c.A267G p.I89M AATTATAGCGTTC 45 3 0.07 63 0 0 4 0 0.00 TNRC6C 57690 mdanderson.org 37 17 76063992 76063992 + Silent SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_018996 exon6 c.A2766G p.K922K CAAAAAAGGACTT 54 3 0.06 59 0 0 12 0 0.00 PGS1 9489 mdanderson.org 37 17 76396833 76396833 + Silent SNP C C A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_024419 exon6 c.C777A p.A259A GATTGCCGACTTC 51 3 0.06 64 0 0 26 0 0.00 CHAF1A 10036 broad.mit.edu 37 19 4422659 4422661 + In_Frame_Del DEL AAG AAG - novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . CHAF1A NM_005483 exon5 c.1114_1116del p.372_372del GAGGCCAAGAAGA 130 7 0.05 118 0 0 69 33 0 0.00 EMR1 2015 broad.mit.edu 37 19 6904062 6904062 + Missense_Mutation SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . EMR1 NM_001256253 exon8 c.G818A p.R273H AGTGCCGCCAAGA 126 4 0.03 98 0 0 153 0 0 MAG 4099 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 35790581 35790581 + Silent SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_080600 exon5 c.G540T p.L180L GGGGCTGGGGGAG 46 7 0.15 43 0 0 0 0 LMTK3 114783 broad.mit.edu 37 19 49001926 49001926 + Silent SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . LMTK3 NM_001080434 exon12 c.T2487C p.P829P GGAAAAAGGGGTC 53 3 0.06 63 1 0.0158730159 125 4 0 0.00 SPACA4 171169 broad.mit.edu;mdanderson.org 37 19 49110410 49110410 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . SPACA4 NM_133498 exon1 c.C175T p.P59S ACTGGTCCGGTCA 46 4 0.09 51 0 0 9 0 0 TULP2 7288 mdanderson.org 37 19 49399726 49399726 + Missense_Mutation SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_003323 exon4 c.C172T p.R58C AAGAGCGCCAAAG 48 3 0.06 56 0 0 0 0 POLD1 5424 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50918215 50918215 + Silent SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_002691 exon20 c.C2532T p.V844V CCTGGTCACTGCC 44 6 0.14 42 0 0 120 14 0.12 ALMS1 7840 broad.mit.edu 37 2 73829423 73829423 + Missense_Mutation SNP C C T rs368113488 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . ALMS1 NM_015120 exon20 c.C12223T p.R4075W ACCGAGCGGGATG 255 5 0.02 276 0 0 384 41 0 0.00 ANKRD36BP2 0 broad.mit.edu 37 2 89082294 89082295 + RNA INS - - TT rs368332037 bycluster TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . AGTCTCATATGTT 9 3 0.33 5 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89082296 89082297 + RNA INS - - TC rs370959214 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . TCTCATATGTTGA 9 3 0.33 5 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89104384 89104384 + RNA SNP G G A rs71235233 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . TGCAGCGTTCAAG 35 3 0.09 32 0 0 7 0 0.00 ADRA2B 151 mdanderson.org 37 2 96781577 96781577 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_000682 exon1 c.C312T p.C104C GATGGCGCACAGG 55 4 0.07 76 0 0 1 0 0.00 TUBA3D 113457 ucsc.edu 37 2 132237983 132237983 + Silent SNP A A G rs71347110 bycluster;by1000genomes TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . TUBA3D NM_080386 exon4 c.A717G p.T239T CATCACAGCCTCC 75 21 0.28 83 9 0.1084337349 60 22 0 0.00 PTMA 5757 mdanderson.org 37 2 232577532 232577532 + Missense_Mutation SNP A A C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001099285 exon5 c.A307C p.K103Q GATACCAAGAAGC 63 5 0.08 49 0 0 1382 0 0.00 ZNF343 79175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2464083 2464083 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_024325 exon6 c.C1524T p.L508L TCTGATGAGATTT 127 21 0.17 101 0 0 13 0 0.00 FRG1B 284802 mdanderson.org 37 20 29633902 29633902 + RNA SNP C C A rs145072022 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . AGAGAACCAAATT 171 5 0.03 165 1 0.0060606061 96 4 0.04 rescued with RNA-seq DUSP15 128853 ucsc.edu 37 20 30454893 30454893 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . DUSP15 NM_080611 exon3 c.C119A p.S40X TGGGGTGACTCAT 38 4 0.11 39 0 0 28 26 0 0.00 MYH7B 57644 mdanderson.org 37 20 33589862 33589862 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_020884 exon44 c.C5914T p.R1972W CGGGCACGGACCC 46 3 0.07 43 0 0 9 0 0.00 LAMA5 3911 mdanderson.org 37 20 60893995 60893995 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_005560 exon52 c.C6946A p.L2316M CGGCCAGTGTCCG 29 3 0.10 37 0 0 16 0 0.00 KRTAP10-6 386674 ucsc.edu 37 21 46011987 46011987 + Missense_Mutation SNP A A G rs201334923 bycluster TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . KRTAP10-6 NM_198688 exon1 c.T379C p.S127P AGACGGACACACA 72 28 0.39 74 20 0.2702702703 57 0 0 PLXNB2 23654 mdanderson.org 37 22 50727515 50727515 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_012401 exon4 c.C1125T p.S375S GTCGCGGCTGCCC 31 3 0.10 30 0 0 3 0 0.00 WDR52 55779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 113115371 113115371 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001164496 exon14 c.C1773T p.A591A CCCTGTGGCTAGA 77 28 0.36 55 0 0 0 0 FAM131A 131408 broad.mit.edu 37 3 184059803 184059803 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . FAM131A . . . . ACCTGTGCTCCCT 228 5 0.02 173 0 0 37 0 0 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 80328968 80328968 + Missense_Mutation SNP T T A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_033214 exon1 c.A387T p.K129N TGGAATTTTTTTA 97 15 0.15 140 0 0 0 0 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 125590598 125590598 + Missense_Mutation SNP C C G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_020337 exon4 c.G3834C p.K1278N TCCAGACTTGGCA 95 20 0.21 110 0 0 11 6 0.55 ADAMTS19 171019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 128984530 128984530 + Silent SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_133638 exon13 c.A2025G p.K675K CAGAAAACAATAC 147 20 0.14 213 0 0 2 1 0.50 FAM8A1 51439 hgsc.bcm.edu 37 6 17602826 17602826 + Nonsense_Mutation SNP G G T rs74444948 bycluster;byfrequency TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e FAM8A1,NS,carcinoma,-1,2 FAM8A1 NM_016255 exon2 c.G718T p.E240X GGCAGAGAATATG 42 6 0.14 36 0 0 0.008 -1 2 0 0 VN1R10P 387316 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27293144 27293144 + RNA SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . AAACAAGACTGTT 168 31 0.18 179 0 0 0 0 MUC21 394263 bcgsc.ca 37 6 30954559 30954560 + Missense_Mutation DNP AC AC CT novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 AC AC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . MUC21 NM_001010909 exon2 c.C608T p.T203L AGCACAACCTCCA 58 7 0.12 83 2 0.0240963855 98 5 0 0.00 TDRD6 221400 mdanderson.org 37 6 46656464 46656464 + Missense_Mutation SNP T T G rs200156736 bycluster TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001168359 exon1 c.T599G p.V200G GGCGGGTGCCCGA 11 8 0.73 18 7 0.3888888889 0.004 0 0 RAC1 5879 mdanderson.org 37 7 6414400 6414400 + Missense_Mutation SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_006908 exon1 c.G34A p.G12R GGAGACGGGTGAG 12 4 0.33 9 0 0 72 9 0.13 WBSCR22 114049 broad.mit.edu 37 7 73111840 73111840 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . WBSCR22 NM_001202560 exon11 c.C746T p.T249I ACCAGACTCGGAG 30 6 0.20 20 0 0 27 76 33 0.43 SLC25A13 10165 hgsc.bcm.edu;broad.mit.edu 37 7 95822404 95822406 + In_Frame_Del DEL ATG ATG - novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 ATG ATG Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . SLC25A13 NM_001160210 exon6 c.559_561del p.187_187del GTGACCATGATGT 169 16 0.09 130 0 0 131 12 0 0.00 PPP1R35 221908 bcgsc.ca 37 7 100033039 100033039 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e C7orf47,caecum,carcinoma,+1,1 . NM_145030 exon4 c.C706A p.R236S AAGGGCGGGGCCG 52 4 0.08 81 0 0 1 142 0 0.00 EPO 2056 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 100320334 100320334 + Silent SNP G G A rs374875798 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_000799 exon4 c.G294A p.S98S GCTGTCGGAAGCT 128 11 0.09 104 0 0 2 0 0.00 PEBP4 157310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22582428 22582428 + Missense_Mutation SNP G G A rs201433464 bycluster;alternate_allele TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e PEBP4,colon,carcinoma,+1,3 PEBP4 NM_144962 exon6 c.C445T p.R149C GGTAGCGATGGAA 273 32 0.12 199 0 0 1 3 2 0 0.00 SNTG1 54212 broad.mit.edu 37 8 51449300 51449300 + Silent SNP C C T rs35419988 TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e SNTG1_ENST00000518864,NS,carcinoma,0,2 SNTG1 NM_018967 exon11 c.C612T p.C204C ATGGTGCGACCTC 177 7 0.04 122 1 0.0081967213 304 2 0 0 GABBR2 9568 mdanderson.org 37 9 101470851 101470851 + Missense_Mutation SNP A A G novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_005458 exon1 c.T169C p.S57P TGATGGAGAGCGG 13 3 0.23 15 0 0 0 0 ZBTB43 23099 mdanderson.org 37 9 129595247 129595247 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001135776 exon2 c.G459T p.E153D GGTAGAGAGCTTT 49 3 0.06 83 0 0 0 0 ABO 28 broad.mit.edu;mdanderson.org 37 9 136131248 136131248 + RNA SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . ABO . . . . CTGGTCGACCATC 66 4 0.06 107 0 0 30 2 0 0.00 LCN1 3933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138415793 138415793 + Missense_Mutation SNP G G T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_001252617 exon4 c.G360T p.E120D CTGTGAGGGCGAG 29 10 0.34 51 0 0 0 0 AR 367 hgsc.bcm.edu;broad.mit.edu 37 X 66766356 66766356 + Silent SNP T T C novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_000044 exon1 c.T1368C p.G456G GGGTGGTGGCGGC 21 4 0.19 9 0 0 0 0 MAP2K4P1 139201 bcgsc.ca 37 X 72745475 72745475 + RNA SNP C C A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . AACAGTCACCCTG 25 4 0.16 27 0 0 0 0 MAGEC1 9947 broad.mit.edu 37 X 140994163 140994163 + Nonsense_Mutation SNP A A T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . MAGEC1 NM_005462 exon4 c.A973T p.R325X CCTGAGAGAACTC 174 4 0.02 109 0 0 317 0 0 MAGEC1 9947 broad.mit.edu 37 X 140994165 140994165 + Missense_Mutation SNP A A T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . MAGEC1 NM_005462 exon4 c.A975T p.R325S TGAGAGAACTCAC 181 5 0.03 112 1 0.0089285714 317 0 0 MAGEA11 4110 mdanderson.org 37 X 148794834 148794834 + Missense_Mutation SNP C C A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_005366 exon2 c.C15A p.F5L TCAGTTCCGCAGA 34 3 0.09 34 0 0 2 0 0.00 HMGB3 3149 mdanderson.org 37 X 150156360 150156360 + Silent SNP G G A novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . NM_005342 exon5 c.G576A p.E192E AGAAGAGGAGGAG 21 2 0.10 9 0 0 91 4 0.04 TAP2 6891 mdanderson.org 37 6 32796783 32796783 + Missense_Mutation SNP C C T novel TCGA-4K-AAAL-01A-11D-A435-10 TCGA-4K-AAAL-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1fd2755d-4d01-429c-8104-5e08621da1a3 405246d8-d554-4802-b3ec-6238c11edb2e . . . . . . ACTGTGCGATCCC 42 3 0.07 48 0 0 67 0 0.00