Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R3 83756 mdanderson.org 37 1 1269228 1269228 + Missense_Mutation SNP T T C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_152228 exon6 c.T1943C p.L648P GCTGCCTGAGCAC 24 3 0.13 32 0 0 2 0 0.00 MMP23B 8510 mdanderson.org 37 1 1569981 1569981 + Nonsense_Mutation SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_006983 exon8 c.C1153T p.R385X TCCTGGCGAGTCC 68 3 0.04 85 0 0 3 0 0.00 PRAMEF2 65122 hgsc.bcm.edu 37 1 12921136 12921136 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 PRAMEF2,pharynx,carcinoma,0,1 PRAMEF2 NM_023014 exon4 c.C927T p.D309D AGAGGACTTGAAG 81 6 0.07 103 1 0.0097087379 0 1 0 0 PRAMEF4 400735 ucsc.edu 37 1 12939904 12939904 + Missense_Mutation SNP A A C rs77146569 byfrequency TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . PRAMEF4 NM_001009611 exon4 c.T898G p.F300V TGAGGAACTTTAA 17 6 0.35 25 5 0.2 62 0 0 ASB17 127247 mdanderson.org 37 1 76388026 76388026 + Nonsense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_080868 exon2 c.C420A p.Y140X TGGACAGTATACT 39 3 0.08 42 0 0 0 0 DNASE2B 58511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 84880280 84880280 + Missense_Mutation SNP G G C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_021233 exon6 c.G815C p.R272T GAAAAAGACAAGA 159 19 0.12 160 0 0 6 0 0.00 AKNAD1 254268 mdanderson.org 37 1 109391643 109391643 + Missense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_152763 exon4 c.C1073T p.T358I TGAGAGGTTGGTG 31 3 0.10 46 0 0 0 0 DENND4B 9909 mdanderson.org 37 1 153914440 153914440 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 DENND4B_ENST00000361217,NS,carcinoma,-1,2 DENND4B_ENST00000361217 NM_014856 exon6 c.G960A p.V320V GGACAGCACAGCG 20 2 0.10 18 0 0 -1 2 35 0 0.00 SOX13 9580 mdanderson.org 37 1 204092289 204092289 + Missense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_005686 exon11 c.G1184A p.G395D AGGACGGCTGTGT 115 5 0.04 132 0 0 142 0 0.00 FLJ31813 0 broad.mit.edu 37 10 51826259 51826259 + RNA DEL A A - novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . AAAAGCAAAAAAA 7 3 0.43 4 0 0 1 0 0.00 DDIT4 54541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 74034751 74034751 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_019058 exon3 c.C504T p.S168S CCCCAGCCTGGTG 66 7 0.11 72 0 0 401 78 0.19 AP2A2 161 mdanderson.org 37 11 988573 988573 + Missense_Mutation SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_001242837 exon10 c.C1156T p.R386W AGCGTGCGGCAGC 35 3 0.09 43 0 0 61 0 0.00 MTL5 9633 mdanderson.org 37 11 68483337 68483337 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_004923 exon7 c.C988A p.H330N CATGATGCAAGTT 52 3 0.06 65 1 0.0153846154 2 0 0.00 MYO7A 4647 mdanderson.org 37 11 76867113 76867113 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 MYO7A,NS,carcinoma,+1,1 MYO7A NM_001127180 exon5 c.G446T p.S149I GCAACAGCCGAGA 47 3 0.06 71 0 0 1 1 3 0 0.00 ERC1 23085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 1291122 1291122 + Missense_Mutation SNP G G C rs200296939 by1000genomes;alternate_allele TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_178040 exon10 c.G1907C p.R636T AGCAGAGGGACAG 184 13 0.07 166 0 0 35 9 0.26 PABPC3 5042 hgsc.bcm.edu 37 13 25671967 25671967 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_030979 exon1 c.G1631T p.R544M CCTCCAGGTTGGC 82 4 0.05 78 0 0 3 3 1.00 POTEG 404785 broad.mit.edu 37 14 19553750 19553750 + Missense_Mutation SNP A A G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . POTEG NM_001005356 exon1 c.A334G p.S112G AGGGGGAGCGGCA 1187 6 0.01 1172 3 0.002559727 118 0 0 CHGA 1113 broad.mit.edu;mdanderson.org 37 14 93398975 93398975 + Missense_Mutation SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . CHGA NM_001275 exon7 c.C1069T p.R357W GAGAAGCGGCTGG 23 3 0.13 40 0 0 32 25 0 0.00 EVL 51466 mdanderson.org 37 14 100593108 100593108 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_016337 exon5 c.G487T p.G163W GCCACAGGTGAGA 45 3 0.07 27 0 0 130 0 0.00 MYO5A 4644 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 52671830 52671830 + Silent SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_000259 exon18 c.C2200T p.L734L GTATCAGTTTCTC 138 9 0.07 106 0 0 50 8 0.16 ADPGK 83440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 73044820 73044820 + Silent SNP T T C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_031284 exon7 c.A1353G p.V451V TTCTACTACTGGC 164 17 0.10 156 0 0 154 26 0.17 C16orf89 146556 mdanderson.org 37 16 5112523 5112523 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 C16orf89_ENST00000422873,NS,carcinoma,-1,3 C16orf89_ENST00000422873 NM_001098514 exon2 c.G261A p.P87P GCTCAGCGGCTGC 83 4 0.05 92 0 0 -1 3 1 0 0.00 SNX29P1 100652781 hgsc.bcm.edu 37 16 21396860 21396860 + RNA SNP T T C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . TTTTTCTTTTTTT 137 8 0.06 128 0 0 0 0 SLC12A3 6559 mdanderson.org 37 16 56906331 56906331 + Silent SNP C C A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_001126108 exon7 c.C921A p.P307P GATCCCCCCATCT 40 3 0.08 59 0 0 8 0 0.00 TSNAXIP1 55815 mdanderson.org 37 16 67860079 67860079 + Missense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_018430 exon10 c.G1007A p.R336H CAGAGCGCTGGCA 42 3 0.07 46 0 0 1 0 0.00 CDC27 996 mdanderson.org 37 17 45234325 45234325 + Nonsense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_001114091 exon7 c.C796T p.R266X AACTTCGACCAGT 47 3 0.06 48 1 0.0208333333 63 0 0.00 CANT1 124583 broad.mit.edu 37 17 76993313 76993313 + Missense_Mutation SNP T T C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 CANT1,NS,carcinoma,0,1 CANT1 NM_001159772 exon4 c.A392G p.K131R TAGCCCTTTTTCA 119 3 0.03 139 0 0 39 1 50 0 0.00 ENOSF1 55556 broad.mit.edu 37 18 712489 712497 + In_Frame_Del DEL GGCGTCCGC GGCGTCCGC - novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 GGCGTCCGC GGCGTCCGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . ENOSF1 NM_202758 exon1 c.10_18del p.4_6del TACCATGGCGTCC 8 4 0.50 10 0 0 44 1 0 0.00 KLHL14 57565 mdanderson.org 37 18 30260557 30260557 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_020805 exon6 c.C1244A p.A415D AAACTGGCTCTTC 50 3 0.06 50 0 0 0 0 FZR1 51343 mdanderson.org 37 19 3525890 3525890 + Missense_Mutation SNP A A G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_016263 exon3 c.A94G p.T32A ACCCTGACGCCTG 60 3 0.05 59 0 0 87 0 0.00 MAG 4099 mdanderson.org 37 19 35800791 35800791 + Missense_Mutation SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_080600 exon8 c.C1246T p.L416F GTGCTCCTCCTGG 25 2 0.08 36 0 0 1 0 0.00 NR1H2 7376 mdanderson.org 37 19 50881647 50881647 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_007121 exon5 c.C423T p.C141C CAAGTGCCAGCAG 38 3 0.08 34 0 0 112 0 0.00 NLRP5 126206 mdanderson.org 37 19 56515190 56515190 + Silent SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 NLRP5_ENST00000390649,NS,carcinoma,0,2 NLRP5_ENST00000390649 NM_153447 exon2 c.G171A p.S57S CAAATCGCTCACC 46 3 0.07 71 0 0 0 2 0 0 EPAS1 2034 broad.mit.edu 37 2 46605204 46605204 + Missense_Mutation SNP G G C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . EPAS1 NM_001430 exon10 c.G1421C p.S474T CCACCAGCAGCAG 83 3 0.04 86 0 0 83 91 0 0.00 PUS10 150962 broad.mit.edu 37 2 61238921 61238921 + Silent SNP T T G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . PUS10 NM_144709 exon2 c.A105C p.A35A GTAAGGTGCATGA 73 15 0.21 53 5 0.0943396226 49 15 0 0.00 TBC1D8 11138 mdanderson.org 37 2 101643904 101643904 + Missense_Mutation SNP C C T rs201720097 bycluster;by1000genomes;alternate_allele TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_001102426 exon15 c.G2416A p.V806I GGATAACGACTCG 38 3 0.08 58 0 0 29 0 0.00 KLHL30 377007 broad.mit.edu 37 2 239059588 239059588 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . KLHL30 NM_198582 exon8 c.G1619T p.R540L CGGTTCGGGACAC 117 3 0.03 143 1 0.006993007 79 0 0 . 0 broad.mit.edu 37 20 29595756 29595757 + RNA INS - - T rs368096278 TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . GTGGCTCTTGCCT 6 4 0.67 5 0 0 0 0 FRG1B 284802 hgsc.bcm.edu 37 20 29625854 29625854 + RNA SNP C C G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . TTTTATCTATCTT 118 5 0.04 126 0 0 1 0 0.00 FRG1B 284802 hgsc.bcm.edu 37 20 29625856 29625856 + RNA SNP A A G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . TTATCTATCTTAT 120 5 0.04 126 0 0 1 0 0.00 RALY 22913 bcgsc.ca;mdanderson.org 37 20 32664877 32664877 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . RALY NM_016732 exon8 c.C702T p.G234G CGGCGGCGGTGGT 83 6 0.07 97 1 0.0103092784 44 127 0 0.00 AMOTL2 51421 mdanderson.org 37 3 134084676 134084676 + Missense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_016201 exon5 c.C1262T p.A421V AGCTTGGCCACCA 47 3 0.06 49 0 0 15 0 0.00 CRIPAK 285464 bcgsc.ca 37 4 1389076 1389076 + Silent SNP C C T rs113118213 bycluster;byfrequency TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . CRIPAK NM_175918 exon1 c.C777T p.P259P AGTGCCCGCCTGC 23 5 0.22 42 2 0.0476190476 185 7 0 0.00 CABS1 85438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 71201486 71201486 + Missense_Mutation SNP C C G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_033122 exon1 c.C730G p.L244V ATTGACCTAAGTG 69 15 0.22 86 0 0 0 0 NKD2 85409 broad.mit.edu 37 5 1038447 1038449 + In_Frame_Del DEL CAC CAC - rs75431263 alternate_allele TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 CAC CAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . NKD2 NM_033120 exon10 c.1315_1317del p.439_439del CACGAGCACCACC 8 3 0.38 7 0 0 39 62 0 0.00 CEP120 153241 mdanderson.org 37 5 122729128 122729128 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_153223 exon7 c.C676A p.L226M TTCCCAGTAAAGA 87 4 0.05 77 0 0 20 0 0.00 AARS2 57505 broad.mit.edu;mdanderson.org 37 6 44268395 44268395 + Silent SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . AARS2 NM_020745 exon22 c.C2847T p.H949H CCCCATGTGGCTG 55 8 0.15 51 0 0 77 114 26 0.23 MIR2113 0 broad.mit.edu 37 6 98472766 98472767 + RNA INS - - A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . AATATGTAAAAAA 6 2 0.33 4 0 0 0 0 LPA 4018 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 160958956 160958956 + Silent SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . LPA NM_005577 exon38 c.C5773T p.L1925L ATGGCAGACAAGC 127 6 0.05 161 0 0 237 0 0 . 0 broad.mit.edu 37 6 161326647 161326648 + RNA INS - - T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . TCTATTGTTTTTT 6 2 0.33 4 0 0 0 0 ADCY1 107 mdanderson.org 37 7 45614334 45614334 + Silent SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_021116 exon1 c.G192A p.A64A GAAGGCGCTGGCC 13 2 0.15 16 0 0 0 0 KCP 375616 broad.mit.edu 37 7 128548302 128548304 + RNA DEL AAG AAG - rs139059512 by1000genomes;alternate_allele TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 AAG AAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . KCP . . . . GAAAGAAAGAAGA 9 4 0.44 7 0 0 16 0 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 110509211 110509211 + Missense_Mutation SNP A A G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 PKHD1L1,NS,carcinoma,+1,1 PKHD1L1 NM_177531 exon64 c.A10391G p.Y3464C GGATCTATATGAA 163 8 0.05 138 0 0 1 1 0 0 COL14A1 7373 bcgsc.ca 37 8 121344415 121344415 + Silent SNP A A G novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . COL14A1 NM_021110 exon41 c.A4695G p.P1565P ACCTCCAGGACCA 156 6 0.04 150 0 0 292 71 0 0.00 CPSF1 29894 mdanderson.org 37 8 145623295 145623295 + Silent SNP G G A rs150747740 byfrequency TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_013291 exon20 c.C1947T p.C649C CACGGCGCACTGC 50 3 0.06 74 0 0 0.001 93 0 0.00 . 0 broad.mit.edu 37 9 45733883 45733884 + Frame_Shift_Ins INS - - AC rs71259407 TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . ATGGGAGACACAC 15 3 0.20 19 0 0 0 0 PCSK5 5125 mdanderson.org 37 9 78936532 78936532 + Missense_Mutation SNP G G A novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_001190482 exon30 c.G3998A p.C1333Y AGGACTGCATCCA 39 3 0.08 42 0 0 0 0 ALDOB 229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104187142 104187142 + Missense_Mutation SNP A A C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_000035 exon8 c.T982G p.F328V TCATAAAAGCCTC 188 32 0.17 192 0 0 0 0 AMER1 139285 broad.mit.edu 37 X 63412939 63412939 + Silent SNP T T C novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_152424 exon2 c.A228G p.G76G GCTCCGTCCCCCT 116 3 0.03 125 1 0.008 0 0 . 84443 ucsc.edu 37 X 106769929 106769929 + Silent SNP C C T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . GGCTGGCAGTGAG 43 4 0.09 51 0 0 0 0 HAUS7 55559 mdanderson.org 37 X 152722099 152722099 + Missense_Mutation SNP G G T novel TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . NM_017518 exon6 c.C487A p.H163N CGAAGTGCTCCAT 42 3 0.07 61 0 0 118 0 0.00 . 100874520 bcgsc.ca 37 Y 10011533 10011533 + RNA SNP G G T rs414350 TCGA-4K-AA1I-01A-11D-A435-10 TCGA-4K-AA1I-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a24cf0ce-23cc-43aa-b3ec-2b7a1ea1ab48 5a404d57-b50b-4e7e-83c5-dff65c2c3465 . . . . . . TGAGATGCAGGCC 59 11 0.19 54 0 0 0 0